RNA–Protein interactions for RNA: ENST00000625891.2

NRXN1-223, Transcript of neurexin 1, human

TSL 4 BASIC

Gene NRXN1, Length 1,164 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NRXN1-223	ENST00000625891	WNT2B	Q93097	391 aa		13.92	□□□□□ -0.18
NRXN1-223	ENST00000625891	NBPF3	Q9H094	633 aa		13.9	□□□□□ -0.18
NRXN1-223	ENST00000625891	PPP1R3G	B7ZBB8	358 aa		13.89	□□□□□ -0.19
NRXN1-223	ENST00000625891	IFFO2	Q5TF58	517 aa		13.87	□□□□□ -0.19
NRXN1-223	ENST00000625891	COL9A1	P20849	921 aa		13.86	□□□□□ -0.19
NRXN1-223	ENST00000625891	TYW1B	Q6NUM6	668 aa		13.86	□□□□□ -0.19
NRXN1-223	ENST00000625891	TSHZ2	Q9NRE2	1034 aa		13.86	□□□□□ -0.19
NRXN1-223	ENST00000625891	PHF14	O94880	888 aa		13.85	□□□□□ -0.19
NRXN1-223	ENST00000625891	FBXW7	Q969H0	707 aa		13.85	□□□□□ -0.19
NRXN1-223	ENST00000625891	PROX2	Q3B8N5	592 aa		13.84	□□□□□ -0.19
NRXN1-223	ENST00000625891	RABGEF1	Q9UJ41	708 aa		13.84	□□□□□ -0.19
NRXN1-223	ENST00000625891	CAMK2B	Q13554	666 aa		13.83	□□□□□ -0.2
NRXN1-223	ENST00000625891	VSIG10	Q8N0Z9	540 aa		13.8	□□□□□ -0.2
NRXN1-223	ENST00000625891	KDM2A	Q9Y2K7	1162 aa		13.78	□□□□□ -0.2
NRXN1-223	ENST00000625891	DPYSL4	O14531	572 aa		13.77	□□□□□ -0.21
NRXN1-223	ENST00000625891	RGS20	O76081	388 aa		13.77	□□□□□ -0.21
NRXN1-223	ENST00000625891	EPAS1	Q99814	870 aa		13.77	□□□□□ -0.21
NRXN1-223	ENST00000625891	ANKK1	Q8NFD2	765 aa		13.76	□□□□□ -0.21
NRXN1-223	ENST00000625891		A0A0G2JS52	829 aa		13.75	□□□□□ -0.21
NRXN1-223	ENST00000625891	C6orf132	Q5T0Z8	1188 aa		13.75	□□□□□ -0.21
NRXN1-223	ENST00000625891	LAPTM4B	Q86VI4	370 aa		13.75	□□□□□ -0.21
NRXN1-223	ENST00000625891	KIAA1468	Q9P260	1216 aa		13.74	□□□□□ -0.21
NRXN1-223	ENST00000625891	ONECUT3	O60422	494 aa	Predicted RBP	13.73	□□□□□ -0.21
NRXN1-223	ENST00000625891	BCAM	P50895	628 aa		13.71	□□□□□ -0.21
NRXN1-223	ENST00000625891	SOWAHB	A6NEL2	793 aa		13.7	□□□□□ -0.22
NRXN1-223	ENST00000625891	ZFR	Q96KR1	1074 aa	Known RBP	13.69	□□□□□ -0.22
NRXN1-223	ENST00000625891	DDX12P	Q92771	950 aa		13.68	□□□□□ -0.22
NRXN1-223	ENST00000625891	TRIM6-TRIM34	B2RNG4	842 aa		13.67	□□□□□ -0.22
NRXN1-223	ENST00000625891	RBM33	Q96EV2	1170 aa	Known RBP	13.67	□□□□□ -0.22
NRXN1-223	ENST00000625891	ITGBL1	O95965	494 aa	Predicted RBP	13.66	□□□□□ -0.22
NRXN1-223	ENST00000625891	SEPT9	Q9UHD8	586 aa	Predicted RBP	13.66	□□□□□ -0.22
NRXN1-223	ENST00000625891	NYAP1	Q6ZVC0	841 aa		13.62	□□□□□ -0.23
NRXN1-223	ENST00000625891	WBP1L	Q9NX94	342 aa		13.62	□□□□□ -0.23
NRXN1-223	ENST00000625891	FAM98C	Q17RN3	349 aa	Known RBP	13.61	□□□□□ -0.23
NRXN1-223	ENST00000625891	PDIA6	Q15084	440 aa		13.6	□□□□□ -0.23
NRXN1-223	ENST00000625891	EN1	Q05925	392 aa	Predicted RBP	13.59	□□□□□ -0.23
NRXN1-223	ENST00000625891	IRX2	Q9BZI1	471 aa	Predicted RBP	13.59	□□□□□ -0.23
NRXN1-223	ENST00000625891	NBR1	Q14596	966 aa		13.58	□□□□□ -0.24
NRXN1-223	ENST00000625891	TSR1	Q2NL82	804 aa	Known RBP	13.57	□□□□□ -0.24
NRXN1-223	ENST00000625891	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.56	□□□□□ -0.24
NRXN1-223	ENST00000625891	MAP3K7	O43318	606 aa		13.56	□□□□□ -0.24
NRXN1-223	ENST00000625891	TSKS	Q9UJT2	592 aa		13.56	□□□□□ -0.24
NRXN1-223	ENST00000625891	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.55	□□□□□ -0.24
NRXN1-223	ENST00000625891	PACS2	Q86VP3	889 aa		13.54	□□□□□ -0.24
NRXN1-223	ENST00000625891	TSR3	Q9UJK0	312 aa	Known RBP	13.54	□□□□□ -0.24
NRXN1-223	ENST00000625891	LRCH3	Q96II8	777 aa		13.53	□□□□□ -0.24
NRXN1-223	ENST00000625891	KCNC4	Q03721	635 aa		13.52	□□□□□ -0.25
NRXN1-223	ENST00000625891	HPS5	Q9UPZ3	1129 aa		13.52	□□□□□ -0.25
NRXN1-223	ENST00000625891	E2F4	Q16254	413 aa		13.49	□□□□□ -0.25
NRXN1-223	ENST00000625891	ARIH1	Q9Y4X5	557 aa	Predicted RBP	13.49	□□□□□ -0.25
NRXN1-223	ENST00000625891	PRIM1	P49642	420 aa	Known RBP	13.47	□□□□□ -0.25
NRXN1-223	ENST00000625891	CDCA7L	Q96GN5	454 aa		13.47	□□□□□ -0.25
NRXN1-223	ENST00000625891	PRSS12	P56730	875 aa		13.46	□□□□□ -0.25
NRXN1-223	ENST00000625891	FAM198A	Q9UFP1	575 aa		13.45	□□□□□ -0.26
NRXN1-223	ENST00000625891	CERK	Q8TCT0	537 aa		13.44	□□□□□ -0.26
NRXN1-223	ENST00000625891	SMAP	O00193	183 aa		13.43	□□□□□ -0.26
NRXN1-223	ENST00000625891	GRXCR2	A6NFK2	248 aa		13.42	□□□□□ -0.26
NRXN1-223	ENST00000625891	PPP4C	P60510	307 aa		13.42	□□□□□ -0.26
NRXN1-223	ENST00000625891	C3orf80	F5H4A9	247 aa		13.41	□□□□□ -0.26
NRXN1-223	ENST00000625891	SAMD7	Q7Z3H4	446 aa		13.41	□□□□□ -0.26
NRXN1-223	ENST00000625891	WDR70	Q9NW82	654 aa		13.41	□□□□□ -0.26
NRXN1-223	ENST00000625891	TATDN2	Q93075	761 aa		13.39	□□□□□ -0.27
NRXN1-223	ENST00000625891	OSBP	P22059	807 aa		13.38	□□□□□ -0.27
NRXN1-223	ENST00000625891	NBPF26	B4DH59	902 aa		13.36	□□□□□ -0.27
NRXN1-223	ENST00000625891	TJAP1	Q5JTD0	557 aa		13.36	□□□□□ -0.27
NRXN1-223	ENST00000625891	BCAN	Q96GW7	911 aa		13.36	□□□□□ -0.27
NRXN1-223	ENST00000625891	CDHR5	Q9HBB8	845 aa		13.36	□□□□□ -0.27
NRXN1-223	ENST00000625891	PNMA3	Q9UL41	463 aa		13.36	□□□□□ -0.27
NRXN1-223	ENST00000625891	RBM27	Q9P2N5	1060 aa	Known RBP	13.32	□□□□□ -0.28
NRXN1-223	ENST00000625891	NUDT18	Q6ZVK8	323 aa		13.31	□□□□□ -0.28
NRXN1-223	ENST00000625891	KCNV2	Q8TDN2	545 aa		13.3	□□□□□ -0.28
NRXN1-223	ENST00000625891		Q6ZNB5	142 aa		13.29	□□□□□ -0.28
NRXN1-223	ENST00000625891	MTR	Q99707	1265 aa		13.29	□□□□□ -0.28
NRXN1-223	ENST00000625891	IL21	Q9HBE4	155 aa		13.28	□□□□□ -0.28
NRXN1-223	ENST00000625891	P3H3	Q8IVL6	736 aa		13.27	□□□□□ -0.29
NRXN1-223	ENST00000625891	TTC13	Q8NBP0	860 aa		13.27	□□□□□ -0.29
NRXN1-223	ENST00000625891	HDGF	P51858	240 aa	Known RBP	13.26	□□□□□ -0.29
NRXN1-223	ENST00000625891	NPDC1	Q9NQX5	325 aa	Predicted RBP	13.26	□□□□□ -0.29
NRXN1-223	ENST00000625891	APLP1	P51693	650 aa		13.24	□□□□□ -0.29
NRXN1-223	ENST00000625891	LAPTM4A	Q15012	233 aa		13.24	□□□□□ -0.29
NRXN1-223	ENST00000625891	RNF40	O75150	1001 aa		13.23	□□□□□ -0.29
NRXN1-223	ENST00000625891	ZNF516	Q92618	1163 aa		13.23	□□□□□ -0.29
NRXN1-223	ENST00000625891	PPP1R18	Q6NYC8	613 aa		13.22	□□□□□ -0.29
NRXN1-223	ENST00000625891	PADI6	Q6TGC4	694 aa		13.22	□□□□□ -0.29
NRXN1-223	ENST00000625891	PRKD2	Q9BZL6	878 aa		13.21	□□□□□ -0.29
NRXN1-223	ENST00000625891	SWT1	Q5T5J6	900 aa	Known RBP	13.19	□□□□□ -0.3
NRXN1-223	ENST00000625891	GFRA3	O60609	400 aa		13.18	□□□□□ -0.3
NRXN1-223	ENST00000625891	NECTIN2	Q92692	538 aa		13.17	□□□□□ -0.3
NRXN1-223	ENST00000625891	SLF2	Q8IX21	1173 aa		13.16	□□□□□ -0.3
NRXN1-223	ENST00000625891	ARHGEF1	Q92888	912 aa	Known RBP	13.16	□□□□□ -0.3
NRXN1-223	ENST00000625891	EYA1	Q99502	592 aa		13.16	□□□□□ -0.3
NRXN1-223	ENST00000625891	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	13.16	□□□□□ -0.3
NRXN1-223	ENST00000625891	LCE2B	O14633	110 aa		13.15	□□□□□ -0.3
NRXN1-223	ENST00000625891	NKX2-3	Q8TAU0	364 aa		13.15	□□□□□ -0.3
NRXN1-223	ENST00000625891		V9GY48	417 aa	Predicted RBP	13.15	□□□□□ -0.3
NRXN1-223	ENST00000625891	MLLT3	P42568	568 aa	Predicted RBP	13.12	□□□□□ -0.31
NRXN1-223	ENST00000625891	COPS2	P61201	443 aa		13.11	□□□□□ -0.31
NRXN1-223	ENST00000625891	TRAF7	Q6Q0C0	670 aa		13.11	□□□□□ -0.31
NRXN1-223	ENST00000625891	NRG2	O14511	850 aa	Predicted RBP	13.09	□□□□□ -0.31
NRXN1-223	ENST00000625891	SLC4A3	P48751	1232 aa		13.08	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms