RNA–Protein interactions for RNA: ENST00000618939.4

CNOT3-210, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 5

Gene CNOT3, Length 4,516 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-210ENST00000618939 CCDC184Q52MB2 194 aa17.84■□□□□ 0.45
CNOT3-210ENST00000618939 ROCK1Q13464 1354 aa17.84■□□□□ 0.45
CNOT3-210ENST00000618939 SNAPC4Q5SXM2 1469 aa17.84■□□□□ 0.45
CNOT3-210ENST00000618939 KIAA0586Q9BVV6 1533 aa17.83■□□□□ 0.44
CNOT3-210ENST00000618939 PTPN23Q9H3S7 1636 aa17.83■□□□□ 0.44
CNOT3-210ENST00000618939 MAPKBP1O60336 1514 aa17.82■□□□□ 0.44
CNOT3-210ENST00000618939 C9orf84Q5VXU9 1444 aa17.82■□□□□ 0.44
CNOT3-210ENST00000618939 TRAK1Q9UPV9 953 aa17.82■□□□□ 0.44
CNOT3-210ENST00000618939 URB2Q14146 1524 aaKnown RBP17.82■□□□□ 0.44
CNOT3-210ENST00000618939 CHMP4BQ9H444 224 aaKnown RBP17.81■□□□□ 0.44
CNOT3-210ENST00000618939 BRD4O60885 1362 aaPredicted RBP17.81■□□□□ 0.44
CNOT3-210ENST00000618939 DNAJC5BQ9UF47 199 aa17.81■□□□□ 0.44
CNOT3-210ENST00000618939 SYNJ2O15056 1496 aa17.81■□□□□ 0.44
CNOT3-210ENST00000618939 WASHC2CQ9Y4E1 1318 aa17.8■□□□□ 0.44
CNOT3-210ENST00000618939 HDGFL2Q7Z4V5 671 aaPredicted RBP17.8■□□□□ 0.44
CNOT3-210ENST00000618939 C14orf37Q86TY3 774 aa17.79■□□□□ 0.44
CNOT3-210ENST00000618939 CENPJQ9HC77 1338 aaPredicted RBP17.78■□□□□ 0.44
CNOT3-210ENST00000618939 ANKRD30BQ9BXX2 1392 aa17.78■□□□□ 0.44
CNOT3-210ENST00000618939 CRBNQ96SW2 442 aa17.78■□□□□ 0.44
CNOT3-210ENST00000618939 PDE4AP27815 886 aa17.78■□□□□ 0.44
CNOT3-210ENST00000618939 MLECQ14165 292 aa17.78■□□□□ 0.44
CNOT3-210ENST00000618939 NUTM2DQ5VT03 806 aaPredicted RBP17.77■□□□□ 0.43
CNOT3-210ENST00000618939 ABCC5O15440 1437 aa17.75■□□□□ 0.43
CNOT3-210ENST00000618939 C11orf95C9JLR9 678 aaPredicted RBP17.75■□□□□ 0.43
CNOT3-210ENST00000618939 NBPF1Q3BBV0 1214 aa17.75■□□□□ 0.43
CNOT3-210ENST00000618939 RWDD1Q9H446 243 aaPredicted RBP17.75■□□□□ 0.43
CNOT3-210ENST00000618939 GOLGA6L22H0YM25 854 aa17.75■□□□□ 0.43
CNOT3-210ENST00000618939 APAF1O14727 1248 aa17.75■□□□□ 0.43
CNOT3-210ENST00000618939 STAC3Q96MF2 364 aa17.74■□□□□ 0.43
CNOT3-210ENST00000618939 ARHGAP5Q13017 1502 aa17.74■□□□□ 0.43
CNOT3-210ENST00000618939 CENPQQ7L2Z9 268 aaPredicted RBP17.74■□□□□ 0.43
CNOT3-210ENST00000618939 PNISRQ8TF01 805 aaKnown RBP17.73■□□□□ 0.43
CNOT3-210ENST00000618939 PTPRKQ15262 1439 aa17.73■□□□□ 0.43
CNOT3-210ENST00000618939 IPO8O15397 1037 aaKnown RBP17.73■□□□□ 0.43
CNOT3-210ENST00000618939 CLUAP1Q96AJ1 413 aa17.73■□□□□ 0.43
CNOT3-210ENST00000618939 ZBTB7CA1YPR0 619 aa17.73■□□□□ 0.43
CNOT3-210ENST00000618939 PMFBP1Q8TBY8 1022 aa17.73■□□□□ 0.43
CNOT3-210ENST00000618939 TERF2IPQ9NYB0 399 aa17.72■□□□□ 0.43
CNOT3-210ENST00000618939 E9PSI1 815 aa17.72■□□□□ 0.43
CNOT3-210ENST00000618939 RRP7AQ9Y3A4 280 aaKnown RBP17.72■□□□□ 0.43
CNOT3-210ENST00000618939 CASC1Q6TDU7 716 aa17.71■□□□□ 0.43
CNOT3-210ENST00000618939 RTN4Q9NQC3 1192 aaKnown RBP17.7■□□□□ 0.42
CNOT3-210ENST00000618939 ITPRIPQ8IWB1 547 aa17.7■□□□□ 0.42
CNOT3-210ENST00000618939 PLEKHG5O94827 1062 aa17.7■□□□□ 0.42
CNOT3-210ENST00000618939 HDGFP51858 240 aaKnown RBP17.7■□□□□ 0.42
CNOT3-210ENST00000618939 SMC4Q9NTJ3 1288 aa17.7■□□□□ 0.42
CNOT3-210ENST00000618939 AFAP1Q8N556 730 aa17.69■□□□□ 0.42
CNOT3-210ENST00000618939 AKNAQ7Z591 1439 aa17.69■□□□□ 0.42
CNOT3-210ENST00000618939 HSCBQ8IWL3 235 aa17.68■□□□□ 0.42
CNOT3-210ENST00000618939 CAMSAP2Q08AD1 1489 aa17.68■□□□□ 0.42
CNOT3-210ENST00000618939 HSP90AB1P08238 724 aaKnown RBP17.68■□□□□ 0.42
CNOT3-210ENST00000618939 PLB1Q6P1J6 1458 aa17.68■□□□□ 0.42
CNOT3-210ENST00000618939 CDCA7LQ96GN5 454 aa17.67■□□□□ 0.42
CNOT3-210ENST00000618939 CGNL1Q0VF96 1302 aa17.67■□□□□ 0.42
CNOT3-210ENST00000618939 ADAMTS8Q9UP79 889 aa17.67■□□□□ 0.42
CNOT3-210ENST00000618939 VGFO15240 615 aaPredicted RBP17.66■□□□□ 0.42
CNOT3-210ENST00000618939 RPRD2Q5VT52 1461 aaKnown RBP17.66■□□□□ 0.42
CNOT3-210ENST00000618939 SOX12O15370 315 aa17.66■□□□□ 0.42
CNOT3-210ENST00000618939 FAM161AQ3B820 660 aa17.66■□□□□ 0.42
CNOT3-210ENST00000618939 TRIM44Q96DX7 344 aaPredicted RBP17.66■□□□□ 0.42
CNOT3-210ENST00000618939 NCOA1Q15788 1441 aa17.66■□□□□ 0.42
CNOT3-210ENST00000618939 CALD1Q05682 793 aaKnown RBP17.65■□□□□ 0.42
CNOT3-210ENST00000618939 NGEFQ8N5V2 710 aa17.65■□□□□ 0.42
CNOT3-210ENST00000618939 SMG6Q86US8 1419 aaKnown RBP17.65■□□□□ 0.42
CNOT3-210ENST00000618939 SLKQ9H2G2 1235 aaPredicted RBP17.65■□□□□ 0.42
CNOT3-210ENST00000618939 GRIN2AQ12879 1464 aa17.65■□□□□ 0.42
CNOT3-210ENST00000618939 SPRYD3Q8NCJ5 442 aa17.64■□□□□ 0.42
CNOT3-210ENST00000618939 THOC2Q8NI27 1593 aaKnown RBP17.64■□□□□ 0.41
CNOT3-210ENST00000618939 EVC2Q86UK5 1308 aa17.64■□□□□ 0.41
CNOT3-210ENST00000618939 HAP1P54257 671 aaPredicted RBP17.64■□□□□ 0.41
CNOT3-210ENST00000618939 BCL2L13Q9BXK5 485 aa17.64■□□□□ 0.41
CNOT3-210ENST00000618939 NCLP19338 710 aaKnown RBP17.63■□□□□ 0.41
CNOT3-210ENST00000618939 UGGT2Q9NYU1 1516 aa17.63■□□□□ 0.41
CNOT3-210ENST00000618939 COG6Q9Y2V7 657 aa17.62■□□□□ 0.41
CNOT3-210ENST00000618939 ARHGEF11O15085 1522 aa17.62■□□□□ 0.41
CNOT3-210ENST00000618939 PLEKHH2Q8IVE3 1493 aa17.62■□□□□ 0.41
CNOT3-210ENST00000618939 MAGI1Q96QZ7 1491 aaPredicted RBP17.62■□□□□ 0.41
CNOT3-210ENST00000618939 PPP2R1AP30153 589 aa17.61■□□□□ 0.41
CNOT3-210ENST00000618939 CFAP70Q5T0N1 1121 aa17.61■□□□□ 0.41
CNOT3-210ENST00000618939 CFAP43Q8NDM7 1665 aa17.6■□□□□ 0.41
CNOT3-210ENST00000618939 ZNF608Q9ULD9 1512 aaPredicted RBP17.6■□□□□ 0.41
CNOT3-210ENST00000618939 USP35Q9P2H5 1018 aa17.58■□□□□ 0.4
CNOT3-210ENST00000618939 SLC4A3P48751 1232 aa17.57■□□□□ 0.4
CNOT3-210ENST00000618939 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.57■□□□□ 0.41e-6■■■□□ 18.3
CNOT3-210ENST00000618939 CCDC141Q6ZP82 1450 aa17.57■□□□□ 0.4
CNOT3-210ENST00000618939 MFAP1P55081 439 aaKnown RBP17.57■□□□□ 0.4
CNOT3-210ENST00000618939 ERBINQ96RT1 1412 aa17.56■□□□□ 0.4
CNOT3-210ENST00000618939 CTTNBP2Q8WZ74 1663 aa17.56■□□□□ 0.4
CNOT3-210ENST00000618939 ZKSCAN2Q63HK3 967 aa17.56■□□□□ 0.4
CNOT3-210ENST00000618939 RTF1Q92541 710 aaKnown RBP17.56■□□□□ 0.4
CNOT3-210ENST00000618939 RUNDC1Q96C34 613 aa17.55■□□□□ 0.4
CNOT3-210ENST00000618939 MINK1Q8N4C8 1332 aaPredicted RBP17.55■□□□□ 0.4
CNOT3-210ENST00000618939 L1TD1Q5T7N2 865 aaKnown RBP17.54■□□□□ 0.4
CNOT3-210ENST00000618939 CFAP44Q96MT7 982 aa17.53■□□□□ 0.4
CNOT3-210ENST00000618939 APBB1O00213 710 aa17.53■□□□□ 0.4
CNOT3-210ENST00000618939 TMEM132EQ6IEE7 984 aa17.53■□□□□ 0.4
CNOT3-210ENST00000618939 LMOD2Q6P5Q4 547 aa17.52■□□□□ 0.39
CNOT3-210ENST00000618939 GPATCH8Q9UKJ3 1502 aaKnown RBP17.51■□□□□ 0.39
CNOT3-210ENST00000618939 KIF14Q15058 1648 aa17.51■□□□□ 0.39
CNOT3-210ENST00000618939 LMOD3Q0VAK6 560 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms