RNA–Protein interactions for RNA: ENST00000611132.4

VPS36-207, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 1 (best) BASIC

Gene VPS36, Length 4,607 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-207ENST00000611132 U2AF1L5P0DN76 240 aaPredicted RBP18.46■□□□□ 0.55
VPS36-207ENST00000611132 U2AF1Q01081 240 aaKnown RBP eCLIP18.46■□□□□ 0.55
VPS36-207ENST00000611132 SENP3Q9H4L4 574 aaPredicted RBP18.46■□□□□ 0.55
VPS36-207ENST00000611132 ZNF644Q9H582 1327 aaPredicted RBP18.46■□□□□ 0.55
VPS36-207ENST00000611132 C11orf95C9JLR9 678 aaPredicted RBP18.46■□□□□ 0.55
VPS36-207ENST00000611132 CFAP44Q96MT7 982 aa18.46■□□□□ 0.55
VPS36-207ENST00000611132 APAF1O14727 1248 aa18.45■□□□□ 0.54
VPS36-207ENST00000611132 CARMIL2Q6F5E8 1435 aa18.45■□□□□ 0.54
VPS36-207ENST00000611132 PDS5BQ9NTI5 1447 aa18.45■□□□□ 0.54
VPS36-207ENST00000611132 VSIG10Q8N0Z9 540 aa18.44■□□□□ 0.54
VPS36-207ENST00000611132 RAD54L2Q9Y4B4 1467 aa18.44■□□□□ 0.54
VPS36-207ENST00000611132 EFCAB5A4FU69 1503 aa18.44■□□□□ 0.54
VPS36-207ENST00000611132 NCAPD3P42695 1498 aa18.43■□□□□ 0.54
VPS36-207ENST00000611132 SMC4Q9NTJ3 1288 aa18.43■□□□□ 0.54
VPS36-207ENST00000611132 TPRNQ4KMQ1 711 aa18.43■□□□□ 0.54
VPS36-207ENST00000611132 EIF3AQ14152 1382 aaKnown RBP18.43■□□□□ 0.54
VPS36-207ENST00000611132 PLCB2Q00722 1185 aa18.43■□□□□ 0.54
VPS36-207ENST00000611132 NPM1P06748 294 aaKnown RBP eCLIP18.42■□□□□ 0.54
VPS36-207ENST00000611132 RSPH4AQ5TD94 716 aa18.42■□□□□ 0.54
VPS36-207ENST00000611132 KANK1Q14678 1352 aa18.41■□□□□ 0.54
VPS36-207ENST00000611132 NGEFQ8N5V2 710 aa18.4■□□□□ 0.54
VPS36-207ENST00000611132 CHMP5Q9NZZ3 219 aa18.4■□□□□ 0.54
VPS36-207ENST00000611132 FAM43AQ8N2R8 423 aa18.4■□□□□ 0.54
VPS36-207ENST00000611132 BCL2L13Q9BXK5 485 aa18.39■□□□□ 0.53
VPS36-207ENST00000611132 ADAMTS8Q9UP79 889 aa18.39■□□□□ 0.53
VPS36-207ENST00000611132 CALD1Q05682 793 aaKnown RBP18.38■□□□□ 0.53
VPS36-207ENST00000611132 RRP7AQ9Y3A4 280 aaKnown RBP18.38■□□□□ 0.53
VPS36-207ENST00000611132 NCOA1Q15788 1441 aa18.37■□□□□ 0.53
VPS36-207ENST00000611132 SKOR2Q2VWA4 1001 aaPredicted RBP18.37■□□□□ 0.53
VPS36-207ENST00000611132 FOXD4L1Q9NU39 408 aa18.37■□□□□ 0.53
VPS36-207ENST00000611132 EHBP1L1Q8N3D4 1523 aa18.36■□□□□ 0.53
VPS36-207ENST00000611132 WASHC2CQ9Y4E1 1318 aa18.35■□□□□ 0.53
VPS36-207ENST00000611132 POGKQ9P215 609 aa18.35■□□□□ 0.53
VPS36-207ENST00000611132 GAPVD1Q14C86 1478 aa18.35■□□□□ 0.53
VPS36-207ENST00000611132 ANKRD50Q9ULJ7 1429 aa18.34■□□□□ 0.53
VPS36-207ENST00000611132 CHAF1AQ13111 956 aaPredicted RBP18.34■□□□□ 0.53
VPS36-207ENST00000611132 ZKSCAN2Q63HK3 967 aa18.34■□□□□ 0.53
VPS36-207ENST00000611132 PCF11O94913 1555 aaKnown RBP18.33■□□□□ 0.53
VPS36-207ENST00000611132 ESF1Q9H501 851 aaKnown RBP18.32■□□□□ 0.52
VPS36-207ENST00000611132 MCCP23508 829 aa18.32■□□□□ 0.52
VPS36-207ENST00000611132 SRPK2P78362 688 aaKnown RBP18.32■□□□□ 0.52
VPS36-207ENST00000611132 DDX49Q9Y6V7 483 aaKnown RBP18.32■□□□□ 0.52
VPS36-207ENST00000611132 KIAA2012Q0VF49 1180 aa18.31■□□□□ 0.52
VPS36-207ENST00000611132 ARID3AQ99856 593 aa18.31■□□□□ 0.52
VPS36-207ENST00000611132 KIAA1107Q9UPP5 1409 aa18.3■□□□□ 0.52
VPS36-207ENST00000611132 MRE11P49959 708 aa18.3■□□□□ 0.52
VPS36-207ENST00000611132 AAMPQ13685 434 aa18.3■□□□□ 0.52
VPS36-207ENST00000611132 PANK1Q8TE04 598 aa18.3■□□□□ 0.52
VPS36-207ENST00000611132 C22orf23Q9BZE7 217 aa18.28■□□□□ 0.52
VPS36-207ENST00000611132 SAFB2Q14151 953 aaKnown RBP eCLIP18.28■□□□□ 0.52
VPS36-207ENST00000611132 ANKRD30BQ9BXX2 1392 aa18.27■□□□□ 0.52
VPS36-207ENST00000611132 HAP1P54257 671 aaPredicted RBP18.27■□□□□ 0.52
VPS36-207ENST00000611132 EFCAB2Q5VUJ9 269 aa18.27■□□□□ 0.52
VPS36-207ENST00000611132 SYAP1Q96A49 352 aaPredicted RBP18.27■□□□□ 0.52
VPS36-207ENST00000611132 APBB1O00213 710 aa18.27■□□□□ 0.52
VPS36-207ENST00000611132 AQRO60306 1485 aaKnown RBP eCLIP18.27■□□□□ 0.521e-8■■■□□ 19.1
VPS36-207ENST00000611132 SUPT6HQ7KZ85 1726 aaKnown RBP18.27■□□□□ 0.51
VPS36-207ENST00000611132 ZBTB7CA1YPR0 619 aa18.26■□□□□ 0.51
VPS36-207ENST00000611132 TRAK2O60296 914 aa18.25■□□□□ 0.51
VPS36-207ENST00000611132 PPP2R1AP30153 589 aa18.25■□□□□ 0.51
VPS36-207ENST00000611132 DZIP1LQ8IYY4 767 aaKnown RBP18.25■□□□□ 0.51
VPS36-207ENST00000611132 PDE3AQ14432 1141 aa18.24■□□□□ 0.51
VPS36-207ENST00000611132 JPH4Q96JJ6 628 aa18.24■□□□□ 0.51
VPS36-207ENST00000611132 DDX19BQ9UMR2 479 aa18.24■□□□□ 0.51
VPS36-207ENST00000611132 SKAP1Q86WV1 359 aa18.23■□□□□ 0.51
VPS36-207ENST00000611132 PTPN23Q9H3S7 1636 aa18.23■□□□□ 0.51
VPS36-207ENST00000611132 NBPF1Q3BBV0 1214 aa18.22■□□□□ 0.51
VPS36-207ENST00000611132 ANKRD45Q5TZF3 282 aa18.22■□□□□ 0.51
VPS36-207ENST00000611132 ST18O60284 1047 aa18.22■□□□□ 0.51
VPS36-207ENST00000611132 ZRSR1Q15695 479 aaKnown RBP18.21■□□□□ 0.51
VPS36-207ENST00000611132 DAPK1P53355 1430 aa18.21■□□□□ 0.51
VPS36-207ENST00000611132 BCAR3O75815 825 aa18.2■□□□□ 0.5
VPS36-207ENST00000611132 RUNDC1Q96C34 613 aa18.2■□□□□ 0.5
VPS36-207ENST00000611132 GOLGA6L4A6NEF3 574 aa18.2■□□□□ 0.5
VPS36-207ENST00000611132 ROCK1Q13464 1354 aa18.2■□□□□ 0.5
VPS36-207ENST00000611132 HDGFL2Q7Z4V5 671 aaPredicted RBP18.19■□□□□ 0.5
VPS36-207ENST00000611132 BIVM-ERCC5R4GMW8 1640 aa18.19■□□□□ 0.5
VPS36-207ENST00000611132 PDZRN3Q9UPQ7 1066 aa18.18■□□□□ 0.5
VPS36-207ENST00000611132 KIF3BO15066 747 aa18.18■□□□□ 0.5
VPS36-207ENST00000611132 RPRD2Q5VT52 1461 aaKnown RBP18.18■□□□□ 0.5
VPS36-207ENST00000611132 TRAK1Q9UPV9 953 aa18.18■□□□□ 0.5
VPS36-207ENST00000611132 C20orf194Q5TEA3 1177 aa18.17■□□□□ 0.5
VPS36-207ENST00000611132 STK26Q9P289 416 aa18.17■□□□□ 0.5
VPS36-207ENST00000611132 HMGXB3Q12766 1538 aa18.17■□□□□ 0.5
VPS36-207ENST00000611132 PEG3Q9GZU2 1588 aa18.17■□□□□ 0.5
VPS36-207ENST00000611132 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.17■□□□□ 0.5
VPS36-207ENST00000611132 ERCC6Q03468 1493 aa18.17■□□□□ 0.5
VPS36-207ENST00000611132 SPAG9O60271 1321 aaKnown RBP18.16■□□□□ 0.5
VPS36-207ENST00000611132 CDK11BP21127 795 aaKnown RBP18.16■□□□□ 0.5
VPS36-207ENST00000611132 KCNJ4P48050 445 aa18.16■□□□□ 0.5
VPS36-207ENST00000611132 DRC7Q8IY82 874 aa18.16■□□□□ 0.5
VPS36-207ENST00000611132 FAM13BQ9NYF5 915 aa18.14■□□□□ 0.49
VPS36-207ENST00000611132 MCM4P33991 863 aa18.14■□□□□ 0.49
VPS36-207ENST00000611132 PTPRKQ15262 1439 aa18.14■□□□□ 0.49
VPS36-207ENST00000611132 TERF2IPQ9NYB0 399 aa18.14■□□□□ 0.49
VPS36-207ENST00000611132 GOLGA6L6A8MZA4 724 aa18.13■□□□□ 0.49
VPS36-207ENST00000611132 PHF14O94880 888 aa18.13■□□□□ 0.49
VPS36-207ENST00000611132 STAC3Q96MF2 364 aa18.13■□□□□ 0.49
VPS36-207ENST00000611132 LNPKQ9C0E8 428 aa18.13■□□□□ 0.49
VPS36-207ENST00000611132 ISY1Q9ULR0 285 aaKnown RBP18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms