RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SYAP1Q96A49 352 aaPredicted RBP25.56■■□□□ 1.68
UPF1-207ENST00000599848 DRC7Q8IY82 874 aa25.55■■□□□ 1.68
UPF1-207ENST00000599848 CEP89Q96ST8 783 aa25.55■■□□□ 1.68
UPF1-207ENST00000599848 EVC2Q86UK5 1308 aa25.55■■□□□ 1.68
UPF1-207ENST00000599848 HSPA5P11021 654 aaKnown RBP25.55■■□□□ 1.68
UPF1-207ENST00000599848 ATF3P18847 181 aa25.55■■□□□ 1.68
UPF1-207ENST00000599848 TEFQ10587 303 aa25.55■■□□□ 1.68
UPF1-207ENST00000599848 NEXNQ0ZGT2 675 aa25.55■■□□□ 1.68
UPF1-207ENST00000599848 LTV1Q96GA3 475 aaPredicted RBP25.54■■□□□ 1.68
UPF1-207ENST00000599848 WWC1Q8IX03 1113 aa25.53■■□□□ 1.68
UPF1-207ENST00000599848 PRM3Q9NNZ6 103 aa25.53■■□□□ 1.68
UPF1-207ENST00000599848 HSP90B1P14625 803 aaKnown RBP25.51■■□□□ 1.67
UPF1-207ENST00000599848 APBB1O00213 710 aa25.51■■□□□ 1.67
UPF1-207ENST00000599848 STAC3Q96MF2 364 aa25.51■■□□□ 1.67
UPF1-207ENST00000599848 GBP4Q96PP9 640 aa25.51■■□□□ 1.67
UPF1-207ENST00000599848 CCDC88BA6NC98 1476 aa25.51■■□□□ 1.67
UPF1-207ENST00000599848 SMC4Q9NTJ3 1288 aa25.5■■□□□ 1.67
UPF1-207ENST00000599848 TOMM22Q9NS69 142 aa25.5■■□□□ 1.67
UPF1-207ENST00000599848 KRI1Q8N9T8 703 aaKnown RBP25.5■■□□□ 1.67
UPF1-207ENST00000599848 TCEAL9Q9UHQ7 104 aa25.49■■□□□ 1.67
UPF1-207ENST00000599848 USP35Q9P2H5 1018 aa25.48■■□□□ 1.67
UPF1-207ENST00000599848 CCDC144AA2RUR9 1427 aa25.48■■□□□ 1.67
UPF1-207ENST00000599848 PHF23Q9BUL5 403 aaPredicted RBP25.48■■□□□ 1.67
UPF1-207ENST00000599848 VPS53Q5VIR6 699 aa25.48■■□□□ 1.67
UPF1-207ENST00000599848 NOC3LQ8WTT2 800 aaKnown RBP25.47■■□□□ 1.67
UPF1-207ENST00000599848 PSME1Q06323 249 aa25.47■■□□□ 1.67
UPF1-207ENST00000599848 CWC22Q9HCG8 908 aaKnown RBP25.47■■□□□ 1.67
UPF1-207ENST00000599848 FAM69CQ0P6D2 419 aa25.46■■□□□ 1.67
UPF1-207ENST00000599848 CGNL1Q0VF96 1302 aa25.45■■□□□ 1.66
UPF1-207ENST00000599848 AKAP17AQ02040 695 aaKnown RBP25.45■■□□□ 1.66
UPF1-207ENST00000599848 TRIM6-TRIM34B2RNG4 842 aa25.44■■□□□ 1.66
UPF1-207ENST00000599848 DDX58O95786 925 aaKnown RBP25.44■■□□□ 1.66
UPF1-207ENST00000599848 SLC4A10Q6U841 1118 aa25.44■■□□□ 1.66
UPF1-207ENST00000599848 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.44■■□□□ 1.66
UPF1-207ENST00000599848 PDE3BQ13370 1112 aa25.43■■□□□ 1.66
UPF1-207ENST00000599848 SYNE3Q6ZMZ3 975 aa25.43■■□□□ 1.66
UPF1-207ENST00000599848 SF3B2Q13435 895 aaKnown RBP25.42■■□□□ 1.66
UPF1-207ENST00000599848 CPLX2Q6PUV4 134 aaKnown RBP25.42■■□□□ 1.66
UPF1-207ENST00000599848 SENP3-EIF4A1A0A087X0R7 540 aa25.41■■□□□ 1.66
UPF1-207ENST00000599848 NLRP13Q86W25 1043 aa25.41■■□□□ 1.66
UPF1-207ENST00000599848 TRAK1Q9UPV9 953 aa25.4■■□□□ 1.66
UPF1-207ENST00000599848 TCERG1O14776 1098 aaKnown RBP25.4■■□□□ 1.66
UPF1-207ENST00000599848 NUTM2FA1L443 756 aa25.37■■□□□ 1.65
UPF1-207ENST00000599848 MSNP26038 577 aaKnown RBP25.36■■□□□ 1.65
UPF1-207ENST00000599848 RCAN3Q9UKA8 241 aa25.36■■□□□ 1.65
UPF1-207ENST00000599848 KIF16BQ96L93 1317 aa25.36■■□□□ 1.65
UPF1-207ENST00000599848 NGEFQ8N5V2 710 aa25.35■■□□□ 1.65
UPF1-207ENST00000599848 NUTM2DQ5VT03 806 aaPredicted RBP25.35■■□□□ 1.65
UPF1-207ENST00000599848 TOP2AP11388 1531 aaKnown RBP25.35■■□□□ 1.65
UPF1-207ENST00000599848 MYO15BQ96JP2 1530 aa25.35■■□□□ 1.65
UPF1-207ENST00000599848 RAPGEF4Q8WZA2 1011 aa25.35■■□□□ 1.65
UPF1-207ENST00000599848 CENPJQ9HC77 1338 aaPredicted RBP25.35■■□□□ 1.65
UPF1-207ENST00000599848 VPS37DQ86XT2 251 aa25.34■■□□□ 1.65
UPF1-207ENST00000599848 FANCD2Q9BXW9 1451 aa25.34■■□□□ 1.65
UPF1-207ENST00000599848 RBM33Q96EV2 1170 aaKnown RBP25.33■■□□□ 1.65
UPF1-207ENST00000599848 TPM2P07951 284 aa25.31■■□□□ 1.64
UPF1-207ENST00000599848 CCDC47Q96A33 483 aaKnown RBP25.31■■□□□ 1.64
UPF1-207ENST00000599848 SF3A1Q15459 793 aaKnown RBP25.29■■□□□ 1.64
UPF1-207ENST00000599848 RUFY2Q8WXA3 655 aa25.29■■□□□ 1.64
UPF1-207ENST00000599848 SYTL4Q96C24 671 aaPredicted RBP25.29■■□□□ 1.64
UPF1-207ENST00000599848 FHOD3Q2V2M9 1422 aa25.29■■□□□ 1.64
UPF1-207ENST00000599848 TPM3P06753 285 aa25.28■■□□□ 1.64
UPF1-207ENST00000599848 ST18O60284 1047 aa25.28■■□□□ 1.64
UPF1-207ENST00000599848 NOP58Q9Y2X3 529 aaKnown RBP25.27■■□□□ 1.64
UPF1-207ENST00000599848 DHX57Q6P158 1386 aaKnown RBP25.26■■□□□ 1.63
UPF1-207ENST00000599848 KIF15Q9NS87 1388 aa25.26■■□□□ 1.63
UPF1-207ENST00000599848 B4GALNT3Q6L9W6 998 aa25.26■■□□□ 1.63
UPF1-207ENST00000599848 MROH2BQ7Z745 1585 aa25.26■■□□□ 1.63
UPF1-207ENST00000599848 GPRASP1Q5JY77 1395 aa25.25■■□□□ 1.63
UPF1-207ENST00000599848 MIA2Q96PC5 1412 aa25.25■■□□□ 1.63
UPF1-207ENST00000599848 KLHL34Q8N239 644 aa25.25■■□□□ 1.63
UPF1-207ENST00000599848 C9orf78Q9NZ63 289 aaPredicted RBP25.25■■□□□ 1.63
UPF1-207ENST00000599848 ROCK1Q13464 1354 aa25.25■■□□□ 1.63
UPF1-207ENST00000599848 RAB3GAP2Q9H2M9 1393 aa25.25■■□□□ 1.63
UPF1-207ENST00000599848 TSR1Q2NL82 804 aaKnown RBP25.23■■□□□ 1.63
UPF1-207ENST00000599848 CNKSR2Q8WXI2 1034 aa25.23■■□□□ 1.63
UPF1-207ENST00000599848 PHF14O94880 888 aa25.23■■□□□ 1.63
UPF1-207ENST00000599848 ATP6V1DQ9Y5K8 247 aa25.23■■□□□ 1.63
UPF1-207ENST00000599848 ATAD2BQ9ULI0 1458 aa25.22■■□□□ 1.63
UPF1-207ENST00000599848 HSP90AB4PQ58FF6 505 aa25.22■■□□□ 1.63
UPF1-207ENST00000599848 TRIM29Q14134 588 aa25.2■■□□□ 1.62
UPF1-207ENST00000599848 CCDC43Q96MW1 224 aaKnown RBP25.2■■□□□ 1.62
UPF1-207ENST00000599848 A0A0U1RQG5 324 aaPredicted RBP25.2■■□□□ 1.62
UPF1-207ENST00000599848 MINK1Q8N4C8 1332 aaPredicted RBP25.19■■□□□ 1.62
UPF1-207ENST00000599848 NAP1L5Q96NT1 182 aaPredicted RBP25.19■■□□□ 1.62
UPF1-207ENST00000599848 FAM184AQ8NB25 1140 aa25.19■■□□□ 1.62
UPF1-207ENST00000599848 TRDNQ13061 729 aa25.18■■□□□ 1.62
UPF1-207ENST00000599848 L3MBTL2Q969R5 705 aa25.18■■□□□ 1.62
UPF1-207ENST00000599848 TPD52L1Q16890 204 aaPredicted RBP25.18■■□□□ 1.62
UPF1-207ENST00000599848 API5Q9BZZ5 524 aaKnown RBP25.18■■□□□ 1.62
UPF1-207ENST00000599848 DIAPH1O60610 1272 aaKnown RBP25.17■■□□□ 1.62
UPF1-207ENST00000599848 H3BQV1 296 aa25.17■■□□□ 1.62
UPF1-207ENST00000599848 TPM1P09493 284 aa25.17■■□□□ 1.62
UPF1-207ENST00000599848 IFFO2Q5TF58 517 aa25.17■■□□□ 1.62
UPF1-207ENST00000599848 FBXW7Q969H0 707 aa25.17■■□□□ 1.62
UPF1-207ENST00000599848 KANK4Q5T7N3 995 aaPredicted RBP25.17■■□□□ 1.62
UPF1-207ENST00000599848 DIAPH3Q9NSV4 1193 aa25.16■■□□□ 1.62
UPF1-207ENST00000599848 POGZQ7Z3K3 1410 aa25.16■■□□□ 1.62
UPF1-207ENST00000599848 ERICH2A1L162 156 aa25.15■■□□□ 1.62
UPF1-207ENST00000599848 DHX16O60231 1041 aaKnown RBP25.14■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms