RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 MLH3Q9UHC1 1453 aa24.24■■□□□ 1.47
SHKBP1-216ENST00000598201 MAGI2Q86UL8 1455 aa24.23■■□□□ 1.47
SHKBP1-216ENST00000598201 DUOX2Q9NRD8 1548 aa24.23■■□□□ 1.47
SHKBP1-216ENST00000598201 FAM135AQ9P2D6 1515 aa24.22■■□□□ 1.47
SHKBP1-216ENST00000598201 HECW2Q9P2P5 1572 aa24.21■■□□□ 1.47
SHKBP1-216ENST00000598201 UNC13BO14795 1591 aa24.21■■□□□ 1.47
SHKBP1-216ENST00000598201 PELP1Q8IZL8 1130 aaKnown RBP24.2■■□□□ 1.47
SHKBP1-216ENST00000598201 RTEL1-TNFRSF6BF6WH68 1400 aa24.2■■□□□ 1.46
SHKBP1-216ENST00000598201 NBPF8Q3BBV2 869 aa24.2■■□□□ 1.46
SHKBP1-216ENST00000598201 YEATS2Q9ULM3 1422 aa24.2■■□□□ 1.46
SHKBP1-216ENST00000598201 ATP7AQ04656 1500 aa24.19■■□□□ 1.46
SHKBP1-216ENST00000598201 KIDINS220Q9ULH0 1771 aa24.18■■□□□ 1.46
SHKBP1-216ENST00000598201 ZFYVE16Q7Z3T8 1539 aa24.18■■□□□ 1.46
SHKBP1-216ENST00000598201 ERBINQ96RT1 1412 aa24.17■■□□□ 1.46
SHKBP1-216ENST00000598201 DDX10Q13206 875 aaKnown RBP24.17■■□□□ 1.46
SHKBP1-216ENST00000598201 INO80Q9ULG1 1556 aaPredicted RBP24.17■■□□□ 1.46
SHKBP1-216ENST00000598201 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.17■■□□□ 1.46
SHKBP1-216ENST00000598201 ARHGEF40Q8TER5 1519 aa24.12■■□□□ 1.45
SHKBP1-216ENST00000598201 HSPA5P11021 654 aaKnown RBP24.12■■□□□ 1.45
SHKBP1-216ENST00000598201 ABCA6Q8N139 1617 aa24.12■■□□□ 1.45
SHKBP1-216ENST00000598201 ATP10AO60312 1499 aa24.11■■□□□ 1.45
SHKBP1-216ENST00000598201 IQGAP3Q86VI3 1631 aa24.11■■□□□ 1.45
SHKBP1-216ENST00000598201 DIP2CQ9Y2E4 1556 aa24.11■■□□□ 1.45
SHKBP1-216ENST00000598201 YTHDC1Q96MU7 727 aaKnown RBP24.09■■□□□ 1.45
SHKBP1-216ENST00000598201 EIF4G2P78344 907 aaKnown RBP eCLIP24.07■■□□□ 1.44
SHKBP1-216ENST00000598201 PLA2R1Q13018 1463 aa24.06■■□□□ 1.44
SHKBP1-216ENST00000598201 A2MP01023 1474 aa24.05■■□□□ 1.44
SHKBP1-216ENST00000598201 DHX29Q7Z478 1369 aaKnown RBP24.04■■□□□ 1.44
SHKBP1-216ENST00000598201 CENPBP07199 599 aaPredicted RBP24.02■■□□□ 1.44
SHKBP1-216ENST00000598201 ARID4BQ4LE39 1312 aaPredicted RBP24.01■■□□□ 1.43
SHKBP1-216ENST00000598201 REREQ9P2R6 1566 aa24.01■■□□□ 1.43
SHKBP1-216ENST00000598201 ZNF326Q5BKZ1 582 aaKnown RBP24■■□□□ 1.43
SHKBP1-216ENST00000598201 CCDC144AA2RUR9 1427 aa24■■□□□ 1.43
SHKBP1-216ENST00000598201 WASHC2AQ641Q2 1341 aa23.98■■□□□ 1.43
SHKBP1-216ENST00000598201 UHRF1BP1Q6BDS2 1440 aa23.98■■□□□ 1.43
SHKBP1-216ENST00000598201 SPATA31E1Q6ZUB1 1445 aa23.98■■□□□ 1.43
SHKBP1-216ENST00000598201 SIGLEC1Q9BZZ2 1709 aa23.97■■□□□ 1.43
SHKBP1-216ENST00000598201 DEPDC5O75140 1603 aa23.96■■□□□ 1.43
SHKBP1-216ENST00000598201 KIF3BO15066 747 aa23.95■■□□□ 1.42
SHKBP1-216ENST00000598201 AGLP35573 1532 aa23.95■■□□□ 1.42
SHKBP1-216ENST00000598201 DCAF11Q8TEB1 546 aa23.95■■□□□ 1.42
SHKBP1-216ENST00000598201 C11orf95C9JLR9 678 aaPredicted RBP23.94■■□□□ 1.42
SHKBP1-216ENST00000598201 KDM2AQ9Y2K7 1162 aa23.94■■□□□ 1.42
SHKBP1-216ENST00000598201 MLECQ14165 292 aa23.92■■□□□ 1.42
SHKBP1-216ENST00000598201 E9PCH4 1651 aa23.91■■□□□ 1.42
SHKBP1-216ENST00000598201 GGT6Q6P531 493 aa23.9■■□□□ 1.42
SHKBP1-216ENST00000598201 RALGAPBQ86X10 1494 aa23.9■■□□□ 1.42
SHKBP1-216ENST00000598201 EIF2AK4Q9P2K8 1649 aaKnown RBP23.89■■□□□ 1.42
SHKBP1-216ENST00000598201 VWDEQ8N2E2 1590 aa23.89■■□□□ 1.42
SHKBP1-216ENST00000598201 RGL3Q3MIN7 710 aa23.89■■□□□ 1.41
SHKBP1-216ENST00000598201 MROH1Q8NDA8 1641 aa23.88■■□□□ 1.41
SHKBP1-216ENST00000598201 SCAF1Q9H7N4 1312 aaKnown RBP23.87■■□□□ 1.41
SHKBP1-216ENST00000598201 USP47Q96K76 1375 aa23.87■■□□□ 1.41
SHKBP1-216ENST00000598201 CCDC7Q96M83 1385 aa23.87■■□□□ 1.41
SHKBP1-216ENST00000598201 PRDM15P57071 1507 aaPredicted RBP23.86■■□□□ 1.41
SHKBP1-216ENST00000598201 BCORL1Q5H9F3 1711 aa23.85■■□□□ 1.41
SHKBP1-216ENST00000598201 KANK1Q14678 1352 aa23.85■■□□□ 1.41
SHKBP1-216ENST00000598201 TET3O43151 1660 aa23.84■■□□□ 1.41
SHKBP1-216ENST00000598201 ANP32CO43423 234 aa23.84■■□□□ 1.41
SHKBP1-216ENST00000598201 PRAG1Q86YV5 1406 aa23.83■■□□□ 1.4
SHKBP1-216ENST00000598201 PTPRTO14522 1441 aa23.82■■□□□ 1.4
SHKBP1-216ENST00000598201 KIF7Q2M1P5 1343 aa23.81■■□□□ 1.4
SHKBP1-216ENST00000598201 CARD11Q9BXL7 1154 aa23.81■■□□□ 1.4
SHKBP1-216ENST00000598201 TRPM2O94759 1503 aa23.81■■□□□ 1.4
SHKBP1-216ENST00000598201 PPP6R1Q9UPN7 881 aa23.8■■□□□ 1.4
SHKBP1-216ENST00000598201 RNF17Q9BXT8 1623 aaKnown RBP23.8■■□□□ 1.4
SHKBP1-216ENST00000598201 SPHKAPQ2M3C7 1700 aa23.78■■□□□ 1.4
SHKBP1-216ENST00000598201 ESF1Q9H501 851 aaKnown RBP23.78■■□□□ 1.4
SHKBP1-216ENST00000598201 CNTLNQ9NXG0 1405 aa23.77■■□□□ 1.4
SHKBP1-216ENST00000598201 WASHC2CQ9Y4E1 1318 aa23.77■■□□□ 1.4
SHKBP1-216ENST00000598201 POLR1AO95602 1720 aaPredicted RBP23.76■■□□□ 1.39
SHKBP1-216ENST00000598201 ROCK2O75116 1388 aaKnown RBP23.76■■□□□ 1.39
SHKBP1-216ENST00000598201 TRPM1Q7Z4N2 1603 aa23.76■■□□□ 1.39
SHKBP1-216ENST00000598201 ADAMTSL3P82987 1691 aa23.75■■□□□ 1.39
SHKBP1-216ENST00000598201 CLTCL1P53675 1640 aa23.75■■□□□ 1.39
SHKBP1-216ENST00000598201 CCER2I3L3R5 266 aa23.75■■□□□ 1.39
SHKBP1-216ENST00000598201 KDM4FA0A1W2PPD8 638 aa23.74■■□□□ 1.39
SHKBP1-216ENST00000598201 NBPF1Q3BBV0 1214 aa23.73■■□□□ 1.39
SHKBP1-216ENST00000598201 EFCAB6Q5THR3 1501 aa23.73■■□□□ 1.39
SHKBP1-216ENST00000598201 MADDQ8WXG6 1647 aa23.72■■□□□ 1.39
SHKBP1-216ENST00000598201 LMTK2Q8IWU2 1503 aa23.71■■□□□ 1.39
SHKBP1-216ENST00000598201 FER1L4A9Z1Z3 1794 aa23.71■■□□□ 1.39
SHKBP1-216ENST00000598201 CEP152O94986 1710 aa23.7■■□□□ 1.38
SHKBP1-216ENST00000598201 ST20-MTHFSA0A0A6YYL1 179 aa23.7■■□□□ 1.38
SHKBP1-216ENST00000598201 GPRASP1Q5JY77 1395 aa23.69■■□□□ 1.38
SHKBP1-216ENST00000598201 ABCC3O15438 1527 aa23.68■■□□□ 1.38
SHKBP1-216ENST00000598201 CLTCQ00610 1675 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-216ENST00000598201 UGGT1Q9NYU2 1555 aa23.67■■□□□ 1.38
SHKBP1-216ENST00000598201 GTF3C3Q9Y5Q9 886 aa23.66■■□□□ 1.38
SHKBP1-216ENST00000598201 ZMYM3Q14202 1370 aa23.66■■□□□ 1.38
SHKBP1-216ENST00000598201 ZC3H13Q5T200 1668 aaKnown RBP23.65■■□□□ 1.38
SHKBP1-216ENST00000598201 RIMS1Q86UR5 1692 aaKnown RBP23.65■■□□□ 1.38
SHKBP1-216ENST00000598201 POLR3GLQ9BT43 218 aa23.63■■□□□ 1.37
SHKBP1-216ENST00000598201 CEBPAP49715 358 aaPredicted RBP23.62■■□□□ 1.37
SHKBP1-216ENST00000598201 PLPPR3Q6T4P5 718 aa23.62■■□□□ 1.37
SHKBP1-216ENST00000598201 NPATQ14207 1427 aa23.62■■□□□ 1.37
SHKBP1-216ENST00000598201 LAMC1P11047 1609 aa23.61■■□□□ 1.37
SHKBP1-216ENST00000598201 PTPRMP28827 1452 aa23.61■■□□□ 1.37
SHKBP1-216ENST00000598201 MROH2AA6NES4 1674 aa23.61■■□□□ 1.37
SHKBP1-216ENST00000598201 CAMSAP1Q5T5Y3 1602 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms