RNA–Protein interactions for RNA: ENST00000560549.5

TMOD3-207, Transcript of tropomodulin 3, humanhuman

TSL 1 (best)

Gene TMOD3, Length 1,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMOD3-207ENST00000560549 VPS9D1Q9Y2B5 631 aa9.59□□□□□ -0.87
TMOD3-207ENST00000560549 SPDYE16A6NNV3 312 aaPredicted RBP9.58□□□□□ -0.88
TMOD3-207ENST00000560549 KCNH8Q96L42 1107 aa9.58□□□□□ -0.88
TMOD3-207ENST00000560549 EPAS1Q99814 870 aa9.57□□□□□ -0.88
TMOD3-207ENST00000560549 ZBED2Q9BTP6 218 aa9.57□□□□□ -0.88
TMOD3-207ENST00000560549 PPP1R3GB7ZBB8 358 aa9.54□□□□□ -0.88
TMOD3-207ENST00000560549 BHMG1C9JSJ3 638 aaPredicted RBP9.54□□□□□ -0.88
TMOD3-207ENST00000560549 DDX12PQ92771 950 aa9.53□□□□□ -0.88
TMOD3-207ENST00000560549 COL9A1P20849 921 aa9.52□□□□□ -0.89
TMOD3-207ENST00000560549 PRIM1P49642 420 aaKnown RBP9.52□□□□□ -0.89
TMOD3-207ENST00000560549 C6orf132Q5T0Z8 1188 aa9.5□□□□□ -0.89
TMOD3-207ENST00000560549 EN1Q05925 392 aaPredicted RBP9.49□□□□□ -0.89
TMOD3-207ENST00000560549 ARHGEF1Q92888 912 aaKnown RBP9.48□□□□□ -0.89
TMOD3-207ENST00000560549 ONECUT3O60422 494 aaPredicted RBP9.47□□□□□ -0.89
TMOD3-207ENST00000560549 MLLT3P42568 568 aaPredicted RBP9.46□□□□□ -0.9
TMOD3-207ENST00000560549 NBR1Q14596 966 aa9.46□□□□□ -0.9
TMOD3-207ENST00000560549 RABGEF1Q9UJ41 708 aa9.46□□□□□ -0.9
TMOD3-207ENST00000560549 PROX2Q3B8N5 592 aa9.45□□□□□ -0.9
TMOD3-207ENST00000560549 GRXCR2A6NFK2 248 aa9.44□□□□□ -0.9
TMOD3-207ENST00000560549 RBM33Q96EV2 1170 aaKnown RBP9.44□□□□□ -0.9
TMOD3-207ENST00000560549 HCSTQ9UBK5 93 aa9.44□□□□□ -0.9
TMOD3-207ENST00000560549 OSBPP22059 807 aa9.43□□□□□ -0.9
TMOD3-207ENST00000560549 TSR1Q2NL82 804 aaKnown RBP9.43□□□□□ -0.9
TMOD3-207ENST00000560549 VSIG10Q8N0Z9 540 aa9.43□□□□□ -0.9
TMOD3-207ENST00000560549 P3H3Q8IVL6 736 aa9.42□□□□□ -0.9
TMOD3-207ENST00000560549 NBPF3Q9H094 633 aa9.42□□□□□ -0.9
TMOD3-207ENST00000560549 SEMA3EO15041 775 aa9.41□□□□□ -0.9
TMOD3-207ENST00000560549 KCTD12Q96CX2 325 aaKnown RBP9.41□□□□□ -0.9
TMOD3-207ENST00000560549 STAC3Q96MF2 364 aa9.41□□□□□ -0.9
TMOD3-207ENST00000560549 TRIM6-TRIM34B2RNG4 842 aa9.4□□□□□ -0.9
TMOD3-207ENST00000560549 MRPL50Q8N5N7 158 aaKnown RBP9.4□□□□□ -0.9
TMOD3-207ENST00000560549 MAP3K7O43318 606 aa9.4□□□□□ -0.91
TMOD3-207ENST00000560549 LAPTM4BQ86VI4 370 aa9.4□□□□□ -0.91
TMOD3-207ENST00000560549 CDHR5Q9HBB8 845 aa9.4□□□□□ -0.91
TMOD3-207ENST00000560549 THSD4Q6ZMP0 1018 aa9.38□□□□□ -0.91
TMOD3-207ENST00000560549 KIAA1468Q9P260 1216 aa9.38□□□□□ -0.91
TMOD3-207ENST00000560549 CERKQ8TCT0 537 aa9.37□□□□□ -0.91
TMOD3-207ENST00000560549 TSKSQ9UJT2 592 aa9.36□□□□□ -0.91
TMOD3-207ENST00000560549 WNT2BQ93097 391 aa9.35□□□□□ -0.91
TMOD3-207ENST00000560549 PRSS12P56730 875 aa9.34□□□□□ -0.91
TMOD3-207ENST00000560549 RBM27Q9P2N5 1060 aaKnown RBP9.34□□□□□ -0.91
TMOD3-207ENST00000560549 FAM198AQ9UFP1 575 aa9.34□□□□□ -0.91
TMOD3-207ENST00000560549 TESPA1A2RU30 521 aaPredicted RBP9.33□□□□□ -0.92
TMOD3-207ENST00000560549 GOLGA8CPA6NN73 597 aa9.33□□□□□ -0.92
TMOD3-207ENST00000560549 CDCA7LQ96GN5 454 aa9.33□□□□□ -0.92
TMOD3-207ENST00000560549 NPDC1Q9NQX5 325 aaPredicted RBP9.33□□□□□ -0.92
TMOD3-207ENST00000560549 FAM98CQ17RN3 349 aaKnown RBP9.32□□□□□ -0.92
TMOD3-207ENST00000560549 TTC13Q8NBP0 860 aa9.32□□□□□ -0.92
TMOD3-207ENST00000560549 C3orf80F5H4A9 247 aa9.31□□□□□ -0.92
TMOD3-207ENST00000560549 ZFRQ96KR1 1074 aaKnown RBP9.31□□□□□ -0.92
TMOD3-207ENST00000560549 PACS2Q86VP3 889 aa9.3□□□□□ -0.92
TMOD3-207ENST00000560549 ANKK1Q8NFD2 765 aa9.3□□□□□ -0.92
TMOD3-207ENST00000560549 SEPT9Q9UHD8 586 aaPredicted RBP9.3□□□□□ -0.92
TMOD3-207ENST00000560549 SOWAHBA6NEL2 793 aa9.29□□□□□ -0.92
TMOD3-207ENST00000560549 PTPN5P54829 565 aa9.28□□□□□ -0.92
TMOD3-207ENST00000560549 PLA2G2EQ9NZK7 142 aa9.28□□□□□ -0.92
TMOD3-207ENST00000560549 BCAMP50895 628 aa9.26□□□□□ -0.93
TMOD3-207ENST00000560549 RBM26Q5T8P6 1007 aaKnown RBP9.26□□□□□ -0.93
TMOD3-207ENST00000560549 IFFO2Q5TF58 517 aa9.25□□□□□ -0.93
TMOD3-207ENST00000560549 TATDN2Q93075 761 aa9.25□□□□□ -0.93
TMOD3-207ENST00000560549 NBPF26B4DH59 902 aa9.24□□□□□ -0.93
TMOD3-207ENST00000560549 PTGDRQ13258 359 aa9.23□□□□□ -0.93
TMOD3-207ENST00000560549 PADI6Q6TGC4 694 aa9.23□□□□□ -0.93
TMOD3-207ENST00000560549 SMAPO00193 183 aa9.22□□□□□ -0.93
TMOD3-207ENST00000560549 GPR37O15354 613 aa9.22□□□□□ -0.93
TMOD3-207ENST00000560549 NYAP1Q6ZVC0 841 aa9.22□□□□□ -0.93
TMOD3-207ENST00000560549 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.21□□□□□ -0.93
TMOD3-207ENST00000560549 PNMA3Q9UL41 463 aa9.21□□□□□ -0.93
TMOD3-207ENST00000560549 NUTM2FA1L443 756 aa9.2□□□□□ -0.94
TMOD3-207ENST00000560549 NUDT18Q6ZVK8 323 aa9.2□□□□□ -0.94
TMOD3-207ENST00000560549 LRCH3Q96II8 777 aa9.2□□□□□ -0.94
TMOD3-207ENST00000560549 WBP1LQ9NX94 342 aa9.2□□□□□ -0.94
TMOD3-207ENST00000560549 TSR3Q9UJK0 312 aaKnown RBP9.2□□□□□ -0.94
TMOD3-207ENST00000560549 ITGBL1O95965 494 aaPredicted RBP9.19□□□□□ -0.94
TMOD3-207ENST00000560549 EYA1Q99502 592 aa9.19□□□□□ -0.94
TMOD3-207ENST00000560549 SAMD7Q7Z3H4 446 aa9.18□□□□□ -0.94
TMOD3-207ENST00000560549 NISCHQ9Y2I1 1504 aa9.18□□□□□ -0.94
TMOD3-207ENST00000560549 HPS5Q9UPZ3 1129 aa9.17□□□□□ -0.94
TMOD3-207ENST00000560549 FECHP22830 423 aa9.16□□□□□ -0.94
TMOD3-207ENST00000560549 FAM161AQ3B820 660 aa9.15□□□□□ -0.94
TMOD3-207ENST00000560549 FCHSD2O94868 740 aa9.14□□□□□ -0.95
TMOD3-207ENST00000560549 SMYD5Q6GMV2 418 aa9.14□□□□□ -0.95
TMOD3-207ENST00000560549 ADGRG1Q9Y653 693 aa9.14□□□□□ -0.95
TMOD3-207ENST00000560549 A0A0G2JS52 829 aa9.11□□□□□ -0.95
TMOD3-207ENST00000560549 PPP4CP60510 307 aa9.11□□□□□ -0.95
TMOD3-207ENST00000560549 HIC1Q14526 733 aa9.1□□□□□ -0.95
TMOD3-207ENST00000560549 SWT1Q5T5J6 900 aaKnown RBP9.1□□□□□ -0.95
TMOD3-207ENST00000560549 GPIHBP1Q8IV16 184 aa9.1□□□□□ -0.95
TMOD3-207ENST00000560549 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.09□□□□□ -0.95
TMOD3-207ENST00000560549 GNPATO15228 680 aa9.08□□□□□ -0.96
TMOD3-207ENST00000560549 RGS20O76081 388 aa9.08□□□□□ -0.96
TMOD3-207ENST00000560549 DNAJB2P25686 324 aa9.08□□□□□ -0.96
TMOD3-207ENST00000560549 RBM46Q8TBY0 533 aaKnown RBP9.08□□□□□ -0.96
TMOD3-207ENST00000560549 TMEM134Q9H6X4 195 aa9.08□□□□□ -0.96
TMOD3-207ENST00000560549 HDGFP51858 240 aaKnown RBP9.07□□□□□ -0.96
TMOD3-207ENST00000560549 SLF2Q8IX21 1173 aa9.07□□□□□ -0.96
TMOD3-207ENST00000560549 KCNC4Q03721 635 aa9.06□□□□□ -0.96
TMOD3-207ENST00000560549 TJAP1Q5JTD0 557 aa9.06□□□□□ -0.96
TMOD3-207ENST00000560549 NECTIN2Q92692 538 aa9.06□□□□□ -0.96
TMOD3-207ENST00000560549 APLP1P51693 650 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms