RNA–Protein interactions for RNA: ENST00000560236.1

LRRC28-218, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 703 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-218ENST00000560236 PTPN5P54829 565 aa10.33□□□□□ -0.76
LRRC28-218ENST00000560236 COL9A1P20849 921 aa10.31□□□□□ -0.76
LRRC28-218ENST00000560236 PAXIP1Q6ZW49 1069 aaPredicted RBP10.31□□□□□ -0.76
LRRC28-218ENST00000560236 WNT2BQ93097 391 aa10.31□□□□□ -0.76
LRRC28-218ENST00000560236 CFAP44Q96MT7 982 aa10.31□□□□□ -0.76
LRRC28-218ENST00000560236 EPAS1Q99814 870 aa10.31□□□□□ -0.76
LRRC28-218ENST00000560236 THSD4Q6ZMP0 1018 aa10.3□□□□□ -0.76
LRRC28-218ENST00000560236 PROX2Q3B8N5 592 aa10.29□□□□□ -0.76
LRRC28-218ENST00000560236 DDX12PQ92771 950 aa10.29□□□□□ -0.76
LRRC28-218ENST00000560236 RABGEF1Q9UJ41 708 aa10.29□□□□□ -0.76
LRRC28-218ENST00000560236 C6orf132Q5T0Z8 1188 aa10.27□□□□□ -0.77
LRRC28-218ENST00000560236 RBM33Q96EV2 1170 aaKnown RBP10.27□□□□□ -0.77
LRRC28-218ENST00000560236 PDIA6Q15084 440 aa10.25□□□□□ -0.77
LRRC28-218ENST00000560236 WDR70Q9NW82 654 aa10.25□□□□□ -0.77
LRRC28-218ENST00000560236 E2F4Q16254 413 aa10.24□□□□□ -0.77
LRRC28-218ENST00000560236 SPDYE16A6NNV3 312 aaPredicted RBP10.23□□□□□ -0.77
LRRC28-218ENST00000560236 KIAA1468Q9P260 1216 aa10.23□□□□□ -0.77
LRRC28-218ENST00000560236 NBR1Q14596 966 aa10.22□□□□□ -0.77
LRRC28-218ENST00000560236 ANKK1Q8NFD2 765 aa10.22□□□□□ -0.77
LRRC28-218ENST00000560236 LAPTM4BQ86VI4 370 aa10.21□□□□□ -0.77
LRRC28-218ENST00000560236 MAP3K7O43318 606 aa10.2□□□□□ -0.78
LRRC28-218ENST00000560236 ONECUT3O60422 494 aaPredicted RBP10.2□□□□□ -0.78
LRRC28-218ENST00000560236 EN1Q05925 392 aaPredicted RBP10.2□□□□□ -0.78
LRRC28-218ENST00000560236 TRIM6-TRIM34B2RNG4 842 aa10.18□□□□□ -0.78
LRRC28-218ENST00000560236 SEPT9Q9UHD8 586 aaPredicted RBP10.18□□□□□ -0.78
LRRC28-218ENST00000560236 TSR1Q2NL82 804 aaKnown RBP10.17□□□□□ -0.78
LRRC28-218ENST00000560236 ZFRQ96KR1 1074 aaKnown RBP10.17□□□□□ -0.78
LRRC28-218ENST00000560236 ARIH1Q9Y4X5 557 aaPredicted RBP10.17□□□□□ -0.78
LRRC28-218ENST00000560236 BCAMP50895 628 aa10.16□□□□□ -0.78
LRRC28-218ENST00000560236 SOWAHBA6NEL2 793 aa10.15□□□□□ -0.78
LRRC28-218ENST00000560236 GRXCR2A6NFK2 248 aa10.14□□□□□ -0.79
LRRC28-218ENST00000560236 FAM98CQ17RN3 349 aaKnown RBP10.14□□□□□ -0.79
LRRC28-218ENST00000560236 IFFO2Q5TF58 517 aa10.14□□□□□ -0.79
LRRC28-218ENST00000560236 PACS2Q86VP3 889 aa10.13□□□□□ -0.79
LRRC28-218ENST00000560236 TSKSQ9UJT2 592 aa10.11□□□□□ -0.79
LRRC28-218ENST00000560236 PRIM1P49642 420 aaKnown RBP10.09□□□□□ -0.79
LRRC28-218ENST00000560236 NYAP1Q6ZVC0 841 aa10.09□□□□□ -0.79
LRRC28-218ENST00000560236 CERKQ8TCT0 537 aa10.09□□□□□ -0.79
LRRC28-218ENST00000560236 CDCA7LQ96GN5 454 aa10.09□□□□□ -0.79
LRRC28-218ENST00000560236 WBP1LQ9NX94 342 aa10.09□□□□□ -0.79
LRRC28-218ENST00000560236 PRSS12P56730 875 aa10.08□□□□□ -0.8
LRRC28-218ENST00000560236 LRCH3Q96II8 777 aa10.08□□□□□ -0.8
LRRC28-218ENST00000560236 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.08□□□□□ -0.8
LRRC28-218ENST00000560236 A0A0G2JS52 829 aa10.07□□□□□ -0.8
LRRC28-218ENST00000560236 OSBPP22059 807 aa10.07□□□□□ -0.8
LRRC28-218ENST00000560236 TSR3Q9UJK0 312 aaKnown RBP10.06□□□□□ -0.8
LRRC28-218ENST00000560236 RGS20O76081 388 aa10.05□□□□□ -0.8
LRRC28-218ENST00000560236 ITGBL1O95965 494 aaPredicted RBP10.05□□□□□ -0.8
LRRC28-218ENST00000560236 TSHZ2Q9NRE2 1034 aa10.05□□□□□ -0.8
LRRC28-218ENST00000560236 HPS5Q9UPZ3 1129 aa10.05□□□□□ -0.8
LRRC28-218ENST00000560236 SMAPO00193 183 aa10.03□□□□□ -0.8
LRRC28-218ENST00000560236 CDHR5Q9HBB8 845 aa10.03□□□□□ -0.8
LRRC28-218ENST00000560236 FAM198AQ9UFP1 575 aa10.03□□□□□ -0.8
LRRC28-218ENST00000560236 NBPF26B4DH59 902 aa10.02□□□□□ -0.81
LRRC28-218ENST00000560236 TATDN2Q93075 761 aa10.01□□□□□ -0.81
LRRC28-218ENST00000560236 PNMA3Q9UL41 463 aa10.01□□□□□ -0.81
LRRC28-218ENST00000560236 PPP4CP60510 307 aa10□□□□□ -0.81
LRRC28-218ENST00000560236 KCNC4Q03721 635 aa10□□□□□ -0.81
LRRC28-218ENST00000560236 SAMD7Q7Z3H4 446 aa10□□□□□ -0.81
LRRC28-218ENST00000560236 C3orf80F5H4A9 247 aa9.99□□□□□ -0.81
LRRC28-218ENST00000560236 ARHGEF1Q92888 912 aaKnown RBP9.99□□□□□ -0.81
LRRC28-218ENST00000560236 RBM27Q9P2N5 1060 aaKnown RBP9.99□□□□□ -0.81
LRRC28-218ENST00000560236 NUDT18Q6ZVK8 323 aa9.97□□□□□ -0.81
LRRC28-218ENST00000560236 HDGFP51858 240 aaKnown RBP9.96□□□□□ -0.82
LRRC28-218ENST00000560236 KCNV2Q8TDN2 545 aa9.96□□□□□ -0.82
LRRC28-218ENST00000560236 NPDC1Q9NQX5 325 aaPredicted RBP9.95□□□□□ -0.82
LRRC28-218ENST00000560236 PADI6Q6TGC4 694 aa9.94□□□□□ -0.82
LRRC28-218ENST00000560236 RNF40O75150 1001 aa9.93□□□□□ -0.82
LRRC28-218ENST00000560236 MLLT3P42568 568 aaPredicted RBP9.93□□□□□ -0.82
LRRC28-218ENST00000560236 TTC13Q8NBP0 860 aa9.92□□□□□ -0.82
LRRC28-218ENST00000560236 IRX2Q9BZI1 471 aaPredicted RBP9.92□□□□□ -0.82
LRRC28-218ENST00000560236 TJAP1Q5JTD0 557 aa9.88□□□□□ -0.83
LRRC28-218ENST00000560236 P3H3Q8IVL6 736 aa9.88□□□□□ -0.83
LRRC28-218ENST00000560236 SWT1Q5T5J6 900 aaKnown RBP9.87□□□□□ -0.83
LRRC28-218ENST00000560236 SLF2Q8IX21 1173 aa9.86□□□□□ -0.83
LRRC28-218ENST00000560236 NECTIN2Q92692 538 aa9.86□□□□□ -0.83
LRRC28-218ENST00000560236 MTRQ99707 1265 aa9.86□□□□□ -0.83
LRRC28-218ENST00000560236 SLC4A3P48751 1232 aa9.85□□□□□ -0.83
LRRC28-218ENST00000560236 APLP1P51693 650 aa9.85□□□□□ -0.83
LRRC28-218ENST00000560236 PTGDRQ13258 359 aa9.85□□□□□ -0.83
LRRC28-218ENST00000560236 EYA1Q99502 592 aa9.85□□□□□ -0.83
LRRC28-218ENST00000560236 IL21Q9HBE4 155 aa9.85□□□□□ -0.83
LRRC28-218ENST00000560236 NUTM2FA1L443 756 aa9.83□□□□□ -0.84
LRRC28-218ENST00000560236 SEMA3EO15041 775 aa9.81□□□□□ -0.84
LRRC28-218ENST00000560236 ZNF516Q92618 1163 aa9.8□□□□□ -0.84
LRRC28-218ENST00000560236 PLCB2Q00722 1185 aa9.79□□□□□ -0.84
LRRC28-218ENST00000560236 RBM46Q8TBY0 533 aaKnown RBP9.79□□□□□ -0.84
LRRC28-218ENST00000560236 DNAJB2P25686 324 aa9.78□□□□□ -0.84
LRRC28-218ENST00000560236 COPS2P61201 443 aa9.78□□□□□ -0.84
LRRC28-218ENST00000560236 ADGRG1Q9Y653 693 aa9.78□□□□□ -0.84
LRRC28-218ENST00000560236 FCHSD2O94868 740 aa9.77□□□□□ -0.85
LRRC28-218ENST00000560236 PPP1R18Q6NYC8 613 aa9.77□□□□□ -0.85
LRRC28-218ENST00000560236 PRR14Q9BWN1 585 aa9.77□□□□□ -0.85
LRRC28-218ENST00000560236 FAM161AQ3B820 660 aa9.75□□□□□ -0.85
LRRC28-218ENST00000560236 TMEM134Q9H6X4 195 aa9.75□□□□□ -0.85
LRRC28-218ENST00000560236 NKX2-3Q8TAU0 364 aa9.74□□□□□ -0.85
LRRC28-218ENST00000560236 PRKD2Q9BZL6 878 aa9.74□□□□□ -0.85
LRRC28-218ENST00000560236 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.74□□□□□ -0.85
LRRC28-218ENST00000560236 RCCD1A6NED2 376 aa9.73□□□□□ -0.85
LRRC28-218ENST00000560236 Q6ZNB5 142 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms