RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 HSPA2P54652 639 aa6.66□□□□□ -1.34
SNX1-205ENST00000559339 DMRT2Q9Y5R5 561 aa6.66□□□□□ -1.34
SNX1-205ENST00000559339 NPATQ14207 1427 aa6.66□□□□□ -1.34
SNX1-205ENST00000559339 LMTK3Q96Q04 1460 aa6.66□□□□□ -1.34
SNX1-205ENST00000559339 MAST1Q9Y2H9 1570 aa6.65□□□□□ -1.34
SNX1-205ENST00000559339 KANK1Q14678 1352 aa6.65□□□□□ -1.35
SNX1-205ENST00000559339 ERBINQ96RT1 1412 aa6.65□□□□□ -1.35
SNX1-205ENST00000559339 DUOX2Q9NRD8 1548 aa6.65□□□□□ -1.35
SNX1-205ENST00000559339 ITGAEP38570 1179 aa6.64□□□□□ -1.35
SNX1-205ENST00000559339 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.64□□□□□ -1.353e-6■■□□□ 11.5
SNX1-205ENST00000559339 NCOA1Q15788 1441 aa6.64□□□□□ -1.35
SNX1-205ENST00000559339 FAM135AQ9P2D6 1515 aa6.64□□□□□ -1.35
SNX1-205ENST00000559339 DNMT1P26358 1616 aaKnown RBP6.63□□□□□ -1.35
SNX1-205ENST00000559339 PPP4R3CPQ6ZMV5 832 aa6.63□□□□□ -1.35
SNX1-205ENST00000559339 KDM5DQ9BY66 1539 aa6.63□□□□□ -1.35
SNX1-205ENST00000559339 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.63□□□□□ -1.35
SNX1-205ENST00000559339 SETD1BQ9UPS6 1966 aaKnown RBP6.62□□□□□ -1.35
SNX1-205ENST00000559339 PTPRKQ15262 1439 aa6.62□□□□□ -1.35
SNX1-205ENST00000559339 ANKRD50Q9ULJ7 1429 aa6.62□□□□□ -1.35
SNX1-205ENST00000559339 FBXO31Q5XUX0 539 aaPredicted RBP6.62□□□□□ -1.35
SNX1-205ENST00000559339 MROH2AA6NES4 1674 aa6.61□□□□□ -1.35
SNX1-205ENST00000559339 PZPP20742 1482 aa6.61□□□□□ -1.35
SNX1-205ENST00000559339 ROCK1Q13464 1354 aa6.61□□□□□ -1.35
SNX1-205ENST00000559339 TNRQ92752 1358 aa6.61□□□□□ -1.35
SNX1-205ENST00000559339 THEMISQ8N1K5 641 aaPredicted RBP6.61□□□□□ -1.35
SNX1-205ENST00000559339 C3P01024 1663 aa6.61□□□□□ -1.35
SNX1-205ENST00000559339 CLTCQ00610 1675 aaKnown RBP6.61□□□□□ -1.35
SNX1-205ENST00000559339 PREX1Q8TCU6 1659 aa6.61□□□□□ -1.35
SNX1-205ENST00000559339 EIF2AK4Q9P2K8 1649 aaKnown RBP6.61□□□□□ -1.35
SNX1-205ENST00000559339 ADGRL2O95490 1459 aa6.6□□□□□ -1.35
SNX1-205ENST00000559339 PKD2Q13563 968 aa6.6□□□□□ -1.35
SNX1-205ENST00000559339 CROCC2H7BZ55 1655 aa6.59□□□□□ -1.35
SNX1-205ENST00000559339 SCAF1Q9H7N4 1312 aaKnown RBP6.59□□□□□ -1.35
SNX1-205ENST00000559339 STAG3Q9UJ98 1225 aa6.59□□□□□ -1.35
SNX1-205ENST00000559339 ABCC3O15438 1527 aa6.59□□□□□ -1.35
SNX1-205ENST00000559339 NLRP1Q9C000 1473 aa6.59□□□□□ -1.36
SNX1-205ENST00000559339 RRBP1Q9P2E9 1410 aaKnown RBP6.59□□□□□ -1.36
SNX1-205ENST00000559339 RNF17Q9BXT8 1623 aaKnown RBP6.58□□□□□ -1.36
SNX1-205ENST00000559339 ANKLE2Q86XL3 938 aa6.58□□□□□ -1.36
SNX1-205ENST00000559339 PRDM15P57071 1507 aaPredicted RBP6.58□□□□□ -1.36
SNX1-205ENST00000559339 A2ML1A8K2U0 1454 aa6.58□□□□□ -1.36
SNX1-205ENST00000559339 ARHGAP31Q2M1Z3 1444 aa6.58□□□□□ -1.36
SNX1-205ENST00000559339 SLC52A1Q9NWF4 448 aa6.57□□□□□ -1.36
SNX1-205ENST00000559339 PLA2R1Q13018 1463 aa6.57□□□□□ -1.36
SNX1-205ENST00000559339 ZC3H13Q5T200 1668 aaKnown RBP6.57□□□□□ -1.36
SNX1-205ENST00000559339 CEP170BQ9Y4F5 1589 aaPredicted RBP6.57□□□□□ -1.36
SNX1-205ENST00000559339 NUP155O75694 1391 aa6.57□□□□□ -1.36
SNX1-205ENST00000559339 NCKAP5LQ9HCH0 1330 aa6.56□□□□□ -1.36
SNX1-205ENST00000559339 ERVK-7P63135 1459 aa6.56□□□□□ -1.36
SNX1-205ENST00000559339 EID1Q9Y6B2 187 aa6.56□□□□□ -1.36
SNX1-205ENST00000559339 CAMSAP1Q5T5Y3 1602 aa6.56□□□□□ -1.36
SNX1-205ENST00000559339 PTPRTO14522 1441 aa6.56□□□□□ -1.36
SNX1-205ENST00000559339 MYO3AQ8NEV4 1616 aa6.55□□□□□ -1.36
SNX1-205ENST00000559339 HDGFP51858 240 aaKnown RBP6.55□□□□□ -1.36
SNX1-205ENST00000559339 UGGT1Q9NYU2 1555 aa6.55□□□□□ -1.36
SNX1-205ENST00000559339 LMTK2Q8IWU2 1503 aa6.55□□□□□ -1.36
SNX1-205ENST00000559339 MROH1Q8NDA8 1641 aa6.54□□□□□ -1.36
SNX1-205ENST00000559339 RPRD2Q5VT52 1461 aaKnown RBP6.54□□□□□ -1.36
SNX1-205ENST00000559339 ACIN1Q9UKV3 1341 aaKnown RBP6.54□□□□□ -1.36
SNX1-205ENST00000559339 SPATA31D1Q6ZQQ2 1576 aa6.54□□□□□ -1.36
SNX1-205ENST00000559339 KCNA4P22459 653 aa6.54□□□□□ -1.36
SNX1-205ENST00000559339 IDI1Q13907 227 aa6.54□□□□□ -1.36
SNX1-205ENST00000559339 NCBP3Q53F19 620 aaKnown RBP6.54□□□□□ -1.36
SNX1-205ENST00000559339 CERKQ8TCT0 537 aa6.54□□□□□ -1.36
SNX1-205ENST00000559339 TRIM52Q96A61 297 aa6.54□□□□□ -1.36
SNX1-205ENST00000559339 DEPDC5O75140 1603 aa6.54□□□□□ -1.36
SNX1-205ENST00000559339 TXNDC2Q86VQ3 553 aa6.53□□□□□ -1.36
SNX1-205ENST00000559339 FBXO41Q8TF61 875 aa6.53□□□□□ -1.36
SNX1-205ENST00000559339 VWDEQ8N2E2 1590 aa6.52□□□□□ -1.36
SNX1-205ENST00000559339 ZNF142P52746 1687 aaPredicted RBP6.52□□□□□ -1.37
SNX1-205ENST00000559339 HFM1A2PYH4 1435 aa6.52□□□□□ -1.37
SNX1-205ENST00000559339 NAIPQ13075 1403 aa6.52□□□□□ -1.37
SNX1-205ENST00000559339 EFCAB6Q5THR3 1501 aa6.52□□□□□ -1.37
SNX1-205ENST00000559339 CHGAP10645 457 aaKnown RBP6.52□□□□□ -1.37
SNX1-205ENST00000559339 ILDR1Q86SU0 546 aaPredicted RBP6.52□□□□□ -1.37
SNX1-205ENST00000559339 BCANQ96GW7 911 aa6.52□□□□□ -1.37
SNX1-205ENST00000559339 NOS1P29475 1434 aa6.51□□□□□ -1.37
SNX1-205ENST00000559339 CEP152O94986 1710 aa6.51□□□□□ -1.37
SNX1-205ENST00000559339 PPP1R15AO75807 674 aaPredicted RBP6.51□□□□□ -1.37
SNX1-205ENST00000559339 SLC4A1APQ9BWU0 796 aaKnown RBP6.51□□□□□ -1.37
SNX1-205ENST00000559339 TMEM2Q9UHN6 1383 aa6.51□□□□□ -1.37
SNX1-205ENST00000559339 STRCQ7RTU9 1775 aa6.51□□□□□ -1.37
SNX1-205ENST00000559339 ZNF335Q9H4Z2 1342 aaPredicted RBP6.5□□□□□ -1.37
SNX1-205ENST00000559339 NPHP4O75161 1426 aaPredicted RBP6.5□□□□□ -1.37
SNX1-205ENST00000559339 LTKP29376 864 aa6.5□□□□□ -1.37
SNX1-205ENST00000559339 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.5□□□□□ -1.37
SNX1-205ENST00000559339 UNC13BO14795 1591 aa6.49□□□□□ -1.37
SNX1-205ENST00000559339 MED14O60244 1454 aa6.49□□□□□ -1.37
SNX1-205ENST00000559339 SCAF11Q99590 1463 aaKnown RBP6.49□□□□□ -1.37
SNX1-205ENST00000559339 ZNF326Q5BKZ1 582 aaKnown RBP6.49□□□□□ -1.37
SNX1-205ENST00000559339 TET3O43151 1660 aa6.49□□□□□ -1.37
SNX1-205ENST00000559339 IQGAP3Q86VI3 1631 aa6.48□□□□□ -1.37
SNX1-205ENST00000559339 CFAP65Q6ZU64 1925 aaKnown RBP6.48□□□□□ -1.37
SNX1-205ENST00000559339 ARHGAP23Q9P227 1491 aa6.47□□□□□ -1.37
SNX1-205ENST00000559339 SLIT1O75093 1534 aa6.47□□□□□ -1.37
SNX1-205ENST00000559339 SETD5Q9C0A6 1442 aa6.47□□□□□ -1.37
SNX1-205ENST00000559339 GCC2Q8IWJ2 1684 aa6.46□□□□□ -1.37
SNX1-205ENST00000559339 SYNMO15061 1565 aa6.46□□□□□ -1.38
SNX1-205ENST00000559339 TOM1O60784 492 aa6.46□□□□□ -1.38
SNX1-205ENST00000559339 UBR1Q8IWV7 1749 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms