RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 BRD4O60885 1362 aaPredicted RBP9.02□□□□□ -0.97
USP3-210ENST00000559192 PMFBP1Q8TBY8 1022 aa9.02□□□□□ -0.97
USP3-210ENST00000559192 MSNP26038 577 aaKnown RBP9.02□□□□□ -0.97
USP3-210ENST00000559192 EHBP1L1Q8N3D4 1523 aa9.01□□□□□ -0.97
USP3-210ENST00000559192 EFCAB5A4FU69 1503 aa9.01□□□□□ -0.97
USP3-210ENST00000559192 PTPN23Q9H3S7 1636 aa9□□□□□ -0.97
USP3-210ENST00000559192 CCDC144AA2RUR9 1427 aa9□□□□□ -0.97
USP3-210ENST00000559192 BIVM-ERCC5R4GMW8 1640 aa9□□□□□ -0.97
USP3-210ENST00000559192 PRDM2Q13029 1718 aa9□□□□□ -0.97
USP3-210ENST00000559192 SUPT6HQ7KZ85 1726 aaKnown RBP9□□□□□ -0.97
USP3-210ENST00000559192 APAF1O14727 1248 aa9□□□□□ -0.97
USP3-210ENST00000559192 SAFB2Q14151 953 aaKnown RBP eCLIP9□□□□□ -0.97
USP3-210ENST00000559192 CASC1Q6TDU7 716 aa8.99□□□□□ -0.97
USP3-210ENST00000559192 ADAMTS8Q9UP79 889 aa8.99□□□□□ -0.97
USP3-210ENST00000559192 GAPVD1Q14C86 1478 aa8.99□□□□□ -0.97
USP3-210ENST00000559192 GBP4Q96PP9 640 aa8.98□□□□□ -0.97
USP3-210ENST00000559192 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.98□□□□□ -0.973e-6■□□□□ 10.3
USP3-210ENST00000559192 NCAPD3P42695 1498 aa8.98□□□□□ -0.97
USP3-210ENST00000559192 NCOA1Q15788 1441 aa8.98□□□□□ -0.97
USP3-210ENST00000559192 U2AF1L5P0DN76 240 aaPredicted RBP8.98□□□□□ -0.97
USP3-210ENST00000559192 PLCB2Q00722 1185 aa8.98□□□□□ -0.97
USP3-210ENST00000559192 U2AF1Q01081 240 aaKnown RBP eCLIP8.98□□□□□ -0.978e-9■□□□□ 10.7
USP3-210ENST00000559192 HSP90AA2PQ14568 343 aaPredicted RBP8.98□□□□□ -0.97
USP3-210ENST00000559192 MAP3K1Q13233 1512 aa8.98□□□□□ -0.97
USP3-210ENST00000559192 SMC4Q9NTJ3 1288 aa8.98□□□□□ -0.97
USP3-210ENST00000559192 A0A0U1RQG5 324 aaPredicted RBP8.97□□□□□ -0.97
USP3-210ENST00000559192 CHAF1AQ13111 956 aaPredicted RBP8.97□□□□□ -0.97
USP3-210ENST00000559192 PANK1Q8TE04 598 aa8.97□□□□□ -0.97
USP3-210ENST00000559192 APBB1O00213 710 aa8.97□□□□□ -0.97
USP3-210ENST00000559192 UNC13AQ9UPW8 1703 aa8.97□□□□□ -0.97
USP3-210ENST00000559192 PTPRKQ15262 1439 aa8.96□□□□□ -0.97
USP3-210ENST00000559192 PDS5BQ9NTI5 1447 aa8.96□□□□□ -0.97
USP3-210ENST00000559192 E9PSI1 815 aa8.96□□□□□ -0.97
USP3-210ENST00000559192 PODXL2Q9NZ53 605 aa8.96□□□□□ -0.97
USP3-210ENST00000559192 C20orf194Q5TEA3 1177 aa8.95□□□□□ -0.98
USP3-210ENST00000559192 BICRAQ9NZM4 1560 aa8.95□□□□□ -0.98
USP3-210ENST00000559192 AQRO60306 1485 aaKnown RBP eCLIP8.95□□□□□ -0.981e-6■■■■□ 20.3
USP3-210ENST00000559192 DAPK1P53355 1430 aa8.95□□□□□ -0.98
USP3-210ENST00000559192 CDK13Q14004 1512 aaKnown RBP8.94□□□□□ -0.98
USP3-210ENST00000559192 CARMIL2Q6F5E8 1435 aa8.94□□□□□ -0.98
USP3-210ENST00000559192 MIA2Q96PC5 1412 aa8.94□□□□□ -0.98
USP3-210ENST00000559192 NBPF1Q3BBV0 1214 aa8.94□□□□□ -0.98
USP3-210ENST00000559192 EIF3AQ14152 1382 aaKnown RBP8.94□□□□□ -0.98
USP3-210ENST00000559192 ANKRD50Q9ULJ7 1429 aa8.94□□□□□ -0.98
USP3-210ENST00000559192 DDX11L8A8MPP1 907 aa8.94□□□□□ -0.98
USP3-210ENST00000559192 BCAR3O75815 825 aa8.94□□□□□ -0.98
USP3-210ENST00000559192 CGNL1Q0VF96 1302 aa8.93□□□□□ -0.98
USP3-210ENST00000559192 KIAA1107Q9UPP5 1409 aa8.93□□□□□ -0.98
USP3-210ENST00000559192 SRPK2P78362 688 aaKnown RBP8.93□□□□□ -0.98
USP3-210ENST00000559192 PKNOX2Q96KN3 472 aa8.93□□□□□ -0.98
USP3-210ENST00000559192 KANK1Q14678 1352 aa8.92□□□□□ -0.98
USP3-210ENST00000559192 ERCC6Q03468 1493 aa8.92□□□□□ -0.98
USP3-210ENST00000559192 ANKRD30BQ9BXX2 1392 aa8.92□□□□□ -0.98
USP3-210ENST00000559192 FOXD4L5Q5VV16 416 aaPredicted RBP8.92□□□□□ -0.98
USP3-210ENST00000559192 FAM43AQ8N2R8 423 aa8.92□□□□□ -0.98
USP3-210ENST00000559192 FOXD4L4Q8WXT5 416 aaPredicted RBP8.92□□□□□ -0.98
USP3-210ENST00000559192 HECW1Q76N89 1606 aa8.92□□□□□ -0.98
USP3-210ENST00000559192 PEG3Q9GZU2 1588 aa8.92□□□□□ -0.98
USP3-210ENST00000559192 POGKQ9P215 609 aa8.92□□□□□ -0.98
USP3-210ENST00000559192 STK26Q9P289 416 aa8.91□□□□□ -0.98
USP3-210ENST00000559192 PPP2R1AP30153 589 aa8.91□□□□□ -0.98
USP3-210ENST00000559192 NUTM2DQ5VT03 806 aaPredicted RBP8.91□□□□□ -0.98
USP3-210ENST00000559192 PLPPR3Q6T4P5 718 aa8.91□□□□□ -0.98
USP3-210ENST00000559192 IPO8O15397 1037 aaKnown RBP8.91□□□□□ -0.98
USP3-210ENST00000559192 CALRP27797 417 aaKnown RBP8.91□□□□□ -0.98
USP3-210ENST00000559192 ZRSR1Q15695 479 aaKnown RBP8.91□□□□□ -0.98
USP3-210ENST00000559192 POLA1P09884 1462 aaPredicted RBP8.91□□□□□ -0.98
USP3-210ENST00000559192 HMGXB3Q12766 1538 aa8.9□□□□□ -0.98
USP3-210ENST00000559192 PTMSP20962 102 aa8.9□□□□□ -0.98
USP3-210ENST00000559192 NESP48681 1621 aa8.9□□□□□ -0.98
USP3-210ENST00000559192 CHMP4BQ9H444 224 aaKnown RBP8.9□□□□□ -0.99
USP3-210ENST00000559192 NOL8Q76FK4 1167 aaKnown RBP8.89□□□□□ -0.99
USP3-210ENST00000559192 CFAP43Q8NDM7 1665 aa8.89□□□□□ -0.99
USP3-210ENST00000559192 CHMP5Q9NZZ3 219 aa8.89□□□□□ -0.99
USP3-210ENST00000559192 ZKSCAN2Q63HK3 967 aa8.89□□□□□ -0.99
USP3-210ENST00000559192 C22orf23Q9BZE7 217 aa8.89□□□□□ -0.99
USP3-210ENST00000559192 TRAK1Q9UPV9 953 aa8.89□□□□□ -0.99
USP3-210ENST00000559192 TOPBP1Q92547 1522 aa8.88□□□□□ -0.99
USP3-210ENST00000559192 NPM1P06748 294 aaKnown RBP eCLIP8.88□□□□□ -0.99
USP3-210ENST00000559192 CALD1Q05682 793 aaKnown RBP8.88□□□□□ -0.99
USP3-210ENST00000559192 ANKRD45Q5TZF3 282 aa8.88□□□□□ -0.99
USP3-210ENST00000559192 DDX49Q9Y6V7 483 aaKnown RBP8.88□□□□□ -0.99
USP3-210ENST00000559192 EPRSP07814 1512 aaKnown RBP8.88□□□□□ -0.99
USP3-210ENST00000559192 PRG4Q92954 1404 aaPredicted RBP8.88□□□□□ -0.99
USP3-210ENST00000559192 RPRD2Q5VT52 1461 aaKnown RBP8.88□□□□□ -0.99
USP3-210ENST00000559192 PDZRN3Q9UPQ7 1066 aa8.87□□□□□ -0.99
USP3-210ENST00000559192 TRAK2O60296 914 aa8.87□□□□□ -0.99
USP3-210ENST00000559192 PLEKHG5O94827 1062 aa8.87□□□□□ -0.99
USP3-210ENST00000559192 GOLGA6L6A8MZA4 724 aa8.87□□□□□ -0.99
USP3-210ENST00000559192 JPH4Q96JJ6 628 aa8.87□□□□□ -0.99
USP3-210ENST00000559192 DZIP1LQ8IYY4 767 aaKnown RBP8.86□□□□□ -0.99
USP3-210ENST00000559192 ABCC5O15440 1437 aa8.86□□□□□ -0.99
USP3-210ENST00000559192 KIF3BO15066 747 aa8.86□□□□□ -0.99
USP3-210ENST00000559192 NRDCO43847 1150 aa8.86□□□□□ -0.99
USP3-210ENST00000559192 ELL2O00472 640 aaPredicted RBP8.85□□□□□ -0.99
USP3-210ENST00000559192 ERBINQ96RT1 1412 aa8.85□□□□□ -0.99
USP3-210ENST00000559192 SOX12O15370 315 aa8.85□□□□□ -0.99
USP3-210ENST00000559192 GGT6Q6P531 493 aa8.85□□□□□ -0.99
USP3-210ENST00000559192 ESF1Q9H501 851 aaKnown RBP8.85□□□□□ -0.99
USP3-210ENST00000559192 FOXD4L6Q3SYB3 417 aaPredicted RBP8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms