RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 ATP10AO60312 1499 aa14.39□□□□□ -0.11
CUX1-216ENST00000558469 A2MP01023 1474 aa14.39□□□□□ -0.11
CUX1-216ENST00000558469 SETD5Q9C0A6 1442 aa14.39□□□□□ -0.11
CUX1-216ENST00000558469 SIGLEC1Q9BZZ2 1709 aa14.38□□□□□ -0.11
CUX1-216ENST00000558469 DHX29Q7Z478 1369 aaKnown RBP14.37□□□□□ -0.11
CUX1-216ENST00000558469 HOXD11P31277 338 aaPredicted RBP14.37□□□□□ -0.11
CUX1-216ENST00000558469 ANKRD50Q9ULJ7 1429 aa14.37□□□□□ -0.11
CUX1-216ENST00000558469 EIF2AK4Q9P2K8 1649 aaKnown RBP14.37□□□□□ -0.11
CUX1-216ENST00000558469 REREQ9P2R6 1566 aa14.36□□□□□ -0.11
CUX1-216ENST00000558469 ERBINQ96RT1 1412 aa14.36□□□□□ -0.11
CUX1-216ENST00000558469 RNF216Q9NWF9 866 aaPredicted RBP14.35□□□□□ -0.11
CUX1-216ENST00000558469 RAB3GAP2Q9H2M9 1393 aa14.34□□□□□ -0.11
CUX1-216ENST00000558469 BCORL1Q5H9F3 1711 aa14.34□□□□□ -0.11
CUX1-216ENST00000558469 KIF3BO15066 747 aa14.32□□□□□ -0.12
CUX1-216ENST00000558469 DEPDC5O75140 1603 aa14.31□□□□□ -0.12
CUX1-216ENST00000558469 RNF17Q9BXT8 1623 aaKnown RBP14.31□□□□□ -0.12
CUX1-216ENST00000558469 AGLP35573 1532 aa14.31□□□□□ -0.12
CUX1-216ENST00000558469 UNC13BO14795 1591 aa14.3□□□□□ -0.12
CUX1-216ENST00000558469 ARID4BQ4LE39 1312 aaPredicted RBP14.3□□□□□ -0.12
CUX1-216ENST00000558469 HRCP23327 699 aa14.28□□□□□ -0.12
CUX1-216ENST00000558469 MROH1Q8NDA8 1641 aa14.28□□□□□ -0.12
CUX1-216ENST00000558469 TRIM52Q96A61 297 aa14.28□□□□□ -0.12
CUX1-216ENST00000558469 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.28□□□□□ -0.121e-6■■□□□ 14.2
CUX1-216ENST00000558469 CEP152O94986 1710 aa14.27□□□□□ -0.12
CUX1-216ENST00000558469 GGT6Q6P531 493 aa14.27□□□□□ -0.13
CUX1-216ENST00000558469 PRDM15P57071 1507 aaPredicted RBP14.25□□□□□ -0.13
CUX1-216ENST00000558469 NUP155O75694 1391 aa14.25□□□□□ -0.13
CUX1-216ENST00000558469 ACIN1Q9UKV3 1341 aaKnown RBP14.25□□□□□ -0.13
CUX1-216ENST00000558469 MLECQ14165 292 aa14.25□□□□□ -0.13
CUX1-216ENST00000558469 IQGAP3Q86VI3 1631 aa14.25□□□□□ -0.13
CUX1-216ENST00000558469 CFAP65Q6ZU64 1925 aaKnown RBP14.24□□□□□ -0.13
CUX1-216ENST00000558469 DCAF8L1A6NGE4 600 aa14.24□□□□□ -0.13
CUX1-216ENST00000558469 CLTCQ00610 1675 aaKnown RBP14.23□□□□□ -0.13
CUX1-216ENST00000558469 KANK1Q14678 1352 aa14.23□□□□□ -0.13
CUX1-216ENST00000558469 FER1L4A9Z1Z3 1794 aa14.23□□□□□ -0.13
CUX1-216ENST00000558469 ZC3H13Q5T200 1668 aaKnown RBP14.23□□□□□ -0.13
CUX1-216ENST00000558469 VWDEQ8N2E2 1590 aa14.22□□□□□ -0.13
CUX1-216ENST00000558469 KDM5DQ9BY66 1539 aa14.22□□□□□ -0.13
CUX1-216ENST00000558469 FAM135AQ9P2D6 1515 aa14.22□□□□□ -0.13
CUX1-216ENST00000558469 NPM3O75607 178 aaKnown RBP14.22□□□□□ -0.13
CUX1-216ENST00000558469 KCNA4P22459 653 aa14.21□□□□□ -0.13
CUX1-216ENST00000558469 TET3O43151 1660 aa14.2□□□□□ -0.14
CUX1-216ENST00000558469 WASHC2CQ9Y4E1 1318 aa14.2□□□□□ -0.14
CUX1-216ENST00000558469 PZPP20742 1482 aa14.2□□□□□ -0.14
CUX1-216ENST00000558469 CAMSAP1Q5T5Y3 1602 aa14.2□□□□□ -0.14
CUX1-216ENST00000558469 SLC4A1APQ9BWU0 796 aaKnown RBP14.19□□□□□ -0.14
CUX1-216ENST00000558469 ABCC3O15438 1527 aa14.19□□□□□ -0.14
CUX1-216ENST00000558469 E9PCH4 1651 aa14.18□□□□□ -0.14
CUX1-216ENST00000558469 ADAMTSL3P82987 1691 aa14.18□□□□□ -0.14
CUX1-216ENST00000558469 MPHOSPH9Q99550 1183 aa14.18□□□□□ -0.14
CUX1-216ENST00000558469 ESF1Q9H501 851 aaKnown RBP14.18□□□□□ -0.14
CUX1-216ENST00000558469 RIMS1Q86UR5 1692 aaKnown RBP14.17□□□□□ -0.14
CUX1-216ENST00000558469 LMTK2Q8IWU2 1503 aa14.17□□□□□ -0.14
CUX1-216ENST00000558469 MADDQ8WXG6 1647 aa14.17□□□□□ -0.14
CUX1-216ENST00000558469 MROH2AA6NES4 1674 aa14.17□□□□□ -0.14
CUX1-216ENST00000558469 EFCAB6Q5THR3 1501 aa14.15□□□□□ -0.14
CUX1-216ENST00000558469 DHX57Q6P158 1386 aaKnown RBP14.15□□□□□ -0.14
CUX1-216ENST00000558469 PKD2Q13563 968 aa14.15□□□□□ -0.14
CUX1-216ENST00000558469 C3P01024 1663 aa14.14□□□□□ -0.15
CUX1-216ENST00000558469 CNTLNQ9NXG0 1405 aa14.13□□□□□ -0.15
CUX1-216ENST00000558469 SPHKAPQ2M3C7 1700 aa14.12□□□□□ -0.15
CUX1-216ENST00000558469 PREX1Q8TCU6 1659 aa14.12□□□□□ -0.15
CUX1-216ENST00000558469 CCER1Q8TC90 406 aaPredicted RBP14.11□□□□□ -0.15
CUX1-216ENST00000558469 ZMYM3Q14202 1370 aa14.1□□□□□ -0.15
CUX1-216ENST00000558469 ARHGAP31Q2M1Z3 1444 aa14.1□□□□□ -0.15
CUX1-216ENST00000558469 NPATQ14207 1427 aa14.09□□□□□ -0.15
CUX1-216ENST00000558469 RPRD2Q5VT52 1461 aaKnown RBP14.09□□□□□ -0.15
CUX1-216ENST00000558469 CEBPAP49715 358 aaPredicted RBP14.07□□□□□ -0.16
CUX1-216ENST00000558469 FBXO31Q5XUX0 539 aaPredicted RBP14.06□□□□□ -0.16
CUX1-216ENST00000558469 ANKRD30BQ9BXX2 1392 aa14.05□□□□□ -0.16
CUX1-216ENST00000558469 SYNMO15061 1565 aa14.05□□□□□ -0.16
CUX1-216ENST00000558469 KIF1BO60333 1816 aa14.04□□□□□ -0.16
CUX1-216ENST00000558469 KDM4FA0A1W2PPD8 638 aa14.04□□□□□ -0.16
CUX1-216ENST00000558469 PTPRTO14522 1441 aa14.04□□□□□ -0.16
CUX1-216ENST00000558469 PTPRMP28827 1452 aa14.04□□□□□ -0.16
CUX1-216ENST00000558469 ERVK-7P63135 1459 aa14.04□□□□□ -0.16
CUX1-216ENST00000558469 PLA2R1Q13018 1463 aa14.04□□□□□ -0.16
CUX1-216ENST00000558469 TRPM2O94759 1503 aa14.04□□□□□ -0.16
CUX1-216ENST00000558469 SPATA31D1Q6ZQQ2 1576 aa14.04□□□□□ -0.16
CUX1-216ENST00000558469 NOS1P29475 1434 aa14.03□□□□□ -0.16
CUX1-216ENST00000558469 CLTCL1P53675 1640 aa14.03□□□□□ -0.16
CUX1-216ENST00000558469 SETD1BQ9UPS6 1966 aaKnown RBP14.02□□□□□ -0.16
CUX1-216ENST00000558469 UGGT1Q9NYU2 1555 aa14.02□□□□□ -0.16
CUX1-216ENST00000558469 MYO5BQ9ULV0 1848 aa14.01□□□□□ -0.17
CUX1-216ENST00000558469 PIK3C2BO00750 1634 aa14.01□□□□□ -0.17
CUX1-216ENST00000558469 CLSPNQ9HAW4 1339 aa14.01□□□□□ -0.17
CUX1-216ENST00000558469 SIN3AQ96ST3 1273 aa14.01□□□□□ -0.17
CUX1-216ENST00000558469 CCDC144AA2RUR9 1427 aa14□□□□□ -0.17
CUX1-216ENST00000558469 TNRQ92752 1358 aa13.99□□□□□ -0.17
CUX1-216ENST00000558469 NEUROD1Q13562 356 aa13.99□□□□□ -0.17
CUX1-216ENST00000558469 MYO3AQ8NEV4 1616 aa13.97□□□□□ -0.17
CUX1-216ENST00000558469 IDI1Q13907 227 aa13.96□□□□□ -0.17
CUX1-216ENST00000558469 SLC52A1Q9NWF4 448 aa13.96□□□□□ -0.17
CUX1-216ENST00000558469 UBR1Q8IWV7 1749 aa13.95□□□□□ -0.18
CUX1-216ENST00000558469 TMEM131LA2VDJ0 1609 aa13.94□□□□□ -0.18
CUX1-216ENST00000558469 CHGAP10645 457 aaKnown RBP13.94□□□□□ -0.18
CUX1-216ENST00000558469 NLRP1Q9C000 1473 aa13.93□□□□□ -0.18
CUX1-216ENST00000558469 KDM5AP29375 1690 aaKnown RBP13.93□□□□□ -0.18
CUX1-216ENST00000558469 ZNF142P52746 1687 aaPredicted RBP13.93□□□□□ -0.18
CUX1-216ENST00000558469 ADGRB3O60242 1522 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms