RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 UQCRHP07919 91 aa17.61■□□□□ 0.41
SHMT2-226ENST00000556825 RNF216Q9NWF9 866 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-226ENST00000556825 BCCIPQ9P287 314 aaKnown RBP eCLIP17.61■□□□□ 0.41
SHMT2-226ENST00000556825 R3HCC1Q9Y3T6 440 aaKnown RBP17.61■□□□□ 0.41
SHMT2-226ENST00000556825 PHLDB1Q86UU1 1377 aa17.61■□□□□ 0.41
SHMT2-226ENST00000556825 ARHGAP35Q9NRY4 1499 aa17.6■□□□□ 0.41
SHMT2-226ENST00000556825 DNTTIP2Q5QJE6 756 aaKnown RBP17.6■□□□□ 0.41
SHMT2-226ENST00000556825 ARID3AQ99856 593 aa17.6■□□□□ 0.41
SHMT2-226ENST00000556825 HSPA5P11021 654 aaKnown RBP17.59■□□□□ 0.41
SHMT2-226ENST00000556825 MCM4P33991 863 aa17.59■□□□□ 0.41
SHMT2-226ENST00000556825 KTN1Q86UP2 1357 aaKnown RBP17.59■□□□□ 0.41
SHMT2-226ENST00000556825 RCAN3Q9UKA8 241 aa17.58■□□□□ 0.4
SHMT2-226ENST00000556825 TRAK2O60296 914 aa17.57■□□□□ 0.4
SHMT2-226ENST00000556825 SLKQ9H2G2 1235 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-226ENST00000556825 CUL7Q14999 1698 aa17.55■□□□□ 0.4
SHMT2-226ENST00000556825 MSNP26038 577 aaKnown RBP17.55■□□□□ 0.4
SHMT2-226ENST00000556825 SLC20A2Q08357 652 aa17.53■□□□□ 0.4
SHMT2-226ENST00000556825 CCDC173Q0VFZ6 552 aa17.53■□□□□ 0.4
SHMT2-226ENST00000556825 PPP1R9BQ96SB3 815 aa17.53■□□□□ 0.4
SHMT2-226ENST00000556825 KDM2BQ8NHM5 1336 aa17.53■□□□□ 0.4
SHMT2-226ENST00000556825 MRC2Q9UBG0 1479 aa17.52■□□□□ 0.4
SHMT2-226ENST00000556825 TDRD9Q8NDG6 1382 aaKnown RBP17.52■□□□□ 0.4
SHMT2-226ENST00000556825 ABCA5Q8WWZ7 1642 aa17.52■□□□□ 0.39
SHMT2-226ENST00000556825 MAP3K1Q13233 1512 aa17.52■□□□□ 0.39
SHMT2-226ENST00000556825 CCDC7Q96M83 1385 aa17.51■□□□□ 0.39
SHMT2-226ENST00000556825 ZBTB22O15209 634 aa17.51■□□□□ 0.39
SHMT2-226ENST00000556825 GAPVD1Q14C86 1478 aa17.51■□□□□ 0.39
SHMT2-226ENST00000556825 CENPQQ7L2Z9 268 aaPredicted RBP17.5■□□□□ 0.39
SHMT2-226ENST00000556825 USP19O94966 1318 aa17.5■□□□□ 0.39
SHMT2-226ENST00000556825 TARBP1Q13395 1621 aaKnown RBP17.49■□□□□ 0.39
SHMT2-226ENST00000556825 EIF4G2P78344 907 aaKnown RBP eCLIP17.49■□□□□ 0.39
SHMT2-226ENST00000556825 NCOA1Q15788 1441 aa17.49■□□□□ 0.39
SHMT2-226ENST00000556825 CGNQ9P2M7 1197 aaKnown RBP17.48■□□□□ 0.39
SHMT2-226ENST00000556825 ZNF500O60304 480 aaPredicted RBP17.48■□□□□ 0.39
SHMT2-226ENST00000556825 MMP14P50281 582 aa17.48■□□□□ 0.39
SHMT2-226ENST00000556825 HOMEZQ8IX15 550 aa17.48■□□□□ 0.39
SHMT2-226ENST00000556825 TMC1Q8TDI8 760 aa17.47■□□□□ 0.39
SHMT2-226ENST00000556825 MYOM3Q5VTT5 1437 aa17.47■□□□□ 0.39
SHMT2-226ENST00000556825 IRX5P78411 483 aaPredicted RBP17.47■□□□□ 0.39
SHMT2-226ENST00000556825 DNAJC2Q99543 621 aaKnown RBP17.47■□□□□ 0.39
SHMT2-226ENST00000556825 KDM5BQ9UGL1 1544 aa17.46■□□□□ 0.39
SHMT2-226ENST00000556825 CBX1P83916 185 aa17.46■□□□□ 0.39
SHMT2-226ENST00000556825 SASS6Q6UVJ0 657 aa17.46■□□□□ 0.39
SHMT2-226ENST00000556825 HS1BP3Q53T59 392 aa17.45■□□□□ 0.38
SHMT2-226ENST00000556825 CRBNQ96SW2 442 aa17.45■□□□□ 0.38
SHMT2-226ENST00000556825 CSPP1Q1MSJ5 1256 aa17.45■□□□□ 0.38
SHMT2-226ENST00000556825 E9PSI1 815 aa17.44■□□□□ 0.38
SHMT2-226ENST00000556825 GAS2L3Q86XJ1 694 aa17.43■□□□□ 0.38
SHMT2-226ENST00000556825 CTTNBP2Q8WZ74 1663 aa17.43■□□□□ 0.38
SHMT2-226ENST00000556825 PNISRQ8TF01 805 aaKnown RBP17.43■□□□□ 0.38
SHMT2-226ENST00000556825 DDX11L8A8MPP1 907 aa17.42■□□□□ 0.38
SHMT2-226ENST00000556825 AMER1Q5JTC6 1135 aaPredicted RBP17.42■□□□□ 0.38
SHMT2-226ENST00000556825 HAP1P54257 671 aaPredicted RBP17.41■□□□□ 0.38
SHMT2-226ENST00000556825 NOL7Q9UMY1 257 aaKnown RBP17.4■□□□□ 0.38
SHMT2-226ENST00000556825 WDR62O43379 1518 aa17.4■□□□□ 0.38
SHMT2-226ENST00000556825 CLGNO14967 610 aa17.4■□□□□ 0.38
SHMT2-226ENST00000556825 PDE3BQ13370 1112 aa17.39■□□□□ 0.37
SHMT2-226ENST00000556825 ERCC6Q03468 1493 aa17.39■□□□□ 0.37
SHMT2-226ENST00000556825 PBRM1Q86U86 1689 aa17.39■□□□□ 0.37
SHMT2-226ENST00000556825 TIAM1Q13009 1591 aa17.39■□□□□ 0.37
SHMT2-226ENST00000556825 KCNG1Q9UIX4 513 aa17.39■□□□□ 0.37
SHMT2-226ENST00000556825 ATP2B3Q16720 1220 aa17.37■□□□□ 0.37
SHMT2-226ENST00000556825 CHMP5Q9NZZ3 219 aa17.37■□□□□ 0.37
SHMT2-226ENST00000556825 XPCQ01831 940 aaPredicted RBP17.37■□□□□ 0.37
SHMT2-226ENST00000556825 SENP3-EIF4A1A0A087X0R7 540 aa17.36■□□□□ 0.37
SHMT2-226ENST00000556825 HDAC5Q9UQL6 1122 aa17.36■□□□□ 0.37
SHMT2-226ENST00000556825 IFT140Q96RY7 1462 aa17.36■□□□□ 0.37
SHMT2-226ENST00000556825 KCNJ4P48050 445 aa17.36■□□□□ 0.37
SHMT2-226ENST00000556825 AQRO60306 1485 aaKnown RBP eCLIP17.36■□□□□ 0.374e-7■■■■□ 22.4
SHMT2-226ENST00000556825 PLIN1O60240 522 aa17.35■□□□□ 0.37
SHMT2-226ENST00000556825 CERS3Q8IU89 383 aa17.35■□□□□ 0.37
SHMT2-226ENST00000556825 P3H3Q8IVL6 736 aa17.35■□□□□ 0.37
SHMT2-226ENST00000556825 CNPY4Q8N129 248 aa17.35■□□□□ 0.37
SHMT2-226ENST00000556825 CNKSR2Q8WXI2 1034 aa17.35■□□□□ 0.37
SHMT2-226ENST00000556825 TBC1D2Q9BYX2 928 aa17.35■□□□□ 0.37
SHMT2-226ENST00000556825 VIRMAQ69YN4 1812 aaKnown RBP17.35■□□□□ 0.37
SHMT2-226ENST00000556825 NASPP49321 788 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-226ENST00000556825 PSEN1P49768 467 aa17.35■□□□□ 0.37
SHMT2-226ENST00000556825 MAPK8IP2Q13387 824 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-226ENST00000556825 EFCAB5A4FU69 1503 aa17.34■□□□□ 0.37
SHMT2-226ENST00000556825 LRPPRCP42704 1394 aaKnown RBP17.34■□□□□ 0.37
SHMT2-226ENST00000556825 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.33■□□□□ 0.37
SHMT2-226ENST00000556825 MCM5P33992 734 aa17.33■□□□□ 0.36
SHMT2-226ENST00000556825 SLC52A1Q9NWF4 448 aa17.33■□□□□ 0.36
SHMT2-226ENST00000556825 NBPF1Q3BBV0 1214 aa17.32■□□□□ 0.36
SHMT2-226ENST00000556825 MYRIPQ8NFW9 859 aa17.32■□□□□ 0.36
SHMT2-226ENST00000556825 ZNF771Q7L3S4 317 aaPredicted RBP17.32■□□□□ 0.36
SHMT2-226ENST00000556825 ZNF710Q8N1W2 664 aa17.32■□□□□ 0.36
SHMT2-226ENST00000556825 PCF11O94913 1555 aaKnown RBP17.31■□□□□ 0.36
SHMT2-226ENST00000556825 LRRC9Q6ZRR7 1453 aa17.31■□□□□ 0.36
SHMT2-226ENST00000556825 SKOR2Q2VWA4 1001 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-226ENST00000556825 YY1AP1Q9H869 796 aa17.31■□□□□ 0.36
SHMT2-226ENST00000556825 GRIN2BQ13224 1484 aa17.31■□□□□ 0.36
SHMT2-226ENST00000556825 NLRP1Q9C000 1473 aa17.31■□□□□ 0.36
SHMT2-226ENST00000556825 DHX29Q7Z478 1369 aaKnown RBP17.31■□□□□ 0.36
SHMT2-226ENST00000556825 HSP90B1P14625 803 aaKnown RBP17.31■□□□□ 0.36
SHMT2-226ENST00000556825 AXDND1Q5T1B0 1012 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-226ENST00000556825 KIF7Q2M1P5 1343 aa17.3■□□□□ 0.36
SHMT2-226ENST00000556825 FHOD3Q2V2M9 1422 aa17.29■□□□□ 0.36
SHMT2-226ENST00000556825 SEC24BO95487 1268 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms