RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 DUOX2Q9NRD8 1548 aa21.13■□□□□ 0.97
VPS33B-205ENST00000556096 FOXD1Q16676 465 aa21.13■□□□□ 0.97
VPS33B-205ENST00000556096 ZMYM4Q5VZL5 1548 aa21.13■□□□□ 0.97
VPS33B-205ENST00000556096 RPRD2Q5VT52 1461 aaKnown RBP21.12■□□□□ 0.97
VPS33B-205ENST00000556096 MLH3Q9UHC1 1453 aa21.1■□□□□ 0.97
VPS33B-205ENST00000556096 ERBINQ96RT1 1412 aa21.1■□□□□ 0.97
VPS33B-205ENST00000556096 PKD2Q13563 968 aa21.09■□□□□ 0.97
VPS33B-205ENST00000556096 ABCA6Q8N139 1617 aa21.09■□□□□ 0.97
VPS33B-205ENST00000556096 UNC13BO14795 1591 aa21.08■□□□□ 0.97
VPS33B-205ENST00000556096 ARHGEF40Q8TER5 1519 aa21.07■□□□□ 0.96
VPS33B-205ENST00000556096 DIP2CQ9Y2E4 1556 aa21.05■□□□□ 0.96
VPS33B-205ENST00000556096 MAGI2Q86UL8 1455 aa21.05■□□□□ 0.96
VPS33B-205ENST00000556096 FAM135AQ9P2D6 1515 aa21.04■□□□□ 0.96
VPS33B-205ENST00000556096 SIGLEC1Q9BZZ2 1709 aa21.03■□□□□ 0.96
VPS33B-205ENST00000556096 L3MBTL2Q969R5 705 aa21.01■□□□□ 0.95
VPS33B-205ENST00000556096 EIF2AK4Q9P2K8 1649 aaKnown RBP21.01■□□□□ 0.95
VPS33B-205ENST00000556096 ATP10AO60312 1499 aa21■□□□□ 0.95
VPS33B-205ENST00000556096 ARID4BQ4LE39 1312 aaPredicted RBP21■□□□□ 0.95
VPS33B-205ENST00000556096 A2MP01023 1474 aa20.99■□□□□ 0.95
VPS33B-205ENST00000556096 IQGAP3Q86VI3 1631 aa20.99■□□□□ 0.95
VPS33B-205ENST00000556096 DHX29Q7Z478 1369 aaKnown RBP20.99■□□□□ 0.95
VPS33B-205ENST00000556096 DEPDC5O75140 1603 aa20.98■□□□□ 0.95
VPS33B-205ENST00000556096 MLECQ14165 292 aa20.96■□□□□ 0.95
VPS33B-205ENST00000556096 AEBP2Q6ZN18 517 aaPredicted RBP20.95■□□□□ 0.94
VPS33B-205ENST00000556096 BCORL1Q5H9F3 1711 aa20.94■□□□□ 0.94
VPS33B-205ENST00000556096 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.92■□□□□ 0.94
VPS33B-205ENST00000556096 MROH1Q8NDA8 1641 aa20.92■□□□□ 0.94
VPS33B-205ENST00000556096 RNF17Q9BXT8 1623 aaKnown RBP20.92■□□□□ 0.94
VPS33B-205ENST00000556096 KIF3BO15066 747 aa20.9■□□□□ 0.94
VPS33B-205ENST00000556096 REREQ9P2R6 1566 aa20.89■□□□□ 0.94
VPS33B-205ENST00000556096 PRDM15P57071 1507 aaPredicted RBP20.89■□□□□ 0.94
VPS33B-205ENST00000556096 VWDEQ8N2E2 1590 aa20.86■□□□□ 0.93
VPS33B-205ENST00000556096 PLA2R1Q13018 1463 aa20.85■□□□□ 0.93
VPS33B-205ENST00000556096 NBPF8Q3BBV2 869 aa20.85■□□□□ 0.93
VPS33B-205ENST00000556096 GGT6Q6P531 493 aa20.85■□□□□ 0.93
VPS33B-205ENST00000556096 CEP152O94986 1710 aa20.85■□□□□ 0.93
VPS33B-205ENST00000556096 MIER1Q8N108 512 aa20.84■□□□□ 0.93
VPS33B-205ENST00000556096 CCDC144AA2RUR9 1427 aa20.83■□□□□ 0.93
VPS33B-205ENST00000556096 KANK1Q14678 1352 aa20.83■□□□□ 0.92
VPS33B-205ENST00000556096 AGLP35573 1532 aa20.83■□□□□ 0.92
VPS33B-205ENST00000556096 UHRF1BP1Q6BDS2 1440 aa20.82■□□□□ 0.92
VPS33B-205ENST00000556096 TET3O43151 1660 aa20.82■□□□□ 0.92
VPS33B-205ENST00000556096 KDM4FA0A1W2PPD8 638 aa20.81■□□□□ 0.92
VPS33B-205ENST00000556096 E9PCH4 1651 aa20.8■□□□□ 0.92
VPS33B-205ENST00000556096 EIF4G2P78344 907 aaKnown RBP eCLIP20.8■□□□□ 0.92
VPS33B-205ENST00000556096 PLPPR3Q6T4P5 718 aa20.79■□□□□ 0.92
VPS33B-205ENST00000556096 MADDQ8WXG6 1647 aa20.78■□□□□ 0.92
VPS33B-205ENST00000556096 HSPA5P11021 654 aaKnown RBP20.78■□□□□ 0.92
VPS33B-205ENST00000556096 HIRIP3Q9BW71 556 aaPredicted RBP20.78■□□□□ 0.92
VPS33B-205ENST00000556096 ADAMTSL3P82987 1691 aa20.76■□□□□ 0.91
VPS33B-205ENST00000556096 LMTK2Q8IWU2 1503 aa20.76■□□□□ 0.91
VPS33B-205ENST00000556096 ZC3H13Q5T200 1668 aaKnown RBP20.76■□□□□ 0.91
VPS33B-205ENST00000556096 PTPRTO14522 1441 aa20.75■□□□□ 0.91
VPS33B-205ENST00000556096 ABCC3O15438 1527 aa20.75■□□□□ 0.91
VPS33B-205ENST00000556096 FER1L4A9Z1Z3 1794 aa20.75■□□□□ 0.91
VPS33B-205ENST00000556096 EFCAB6Q5THR3 1501 aa20.75■□□□□ 0.91
VPS33B-205ENST00000556096 RIMS1Q86UR5 1692 aaKnown RBP20.74■□□□□ 0.91
VPS33B-205ENST00000556096 CAMSAP1Q5T5Y3 1602 aa20.74■□□□□ 0.91
VPS33B-205ENST00000556096 TRPM2O94759 1503 aa20.72■□□□□ 0.91
VPS33B-205ENST00000556096 SPATA31E1Q6ZUB1 1445 aa20.72■□□□□ 0.91
VPS33B-205ENST00000556096 DDX10Q13206 875 aaKnown RBP20.72■□□□□ 0.91
VPS33B-205ENST00000556096 SPHKAPQ2M3C7 1700 aa20.72■□□□□ 0.91
VPS33B-205ENST00000556096 CLTCQ00610 1675 aaKnown RBP20.72■□□□□ 0.91
VPS33B-205ENST00000556096 DCAF11Q8TEB1 546 aa20.71■□□□□ 0.91
VPS33B-205ENST00000556096 RALGAPBQ86X10 1494 aa20.71■□□□□ 0.91
VPS33B-205ENST00000556096 ESF1Q9H501 851 aaKnown RBP20.7■□□□□ 0.9
VPS33B-205ENST00000556096 WASHC2CQ9Y4E1 1318 aa20.69■□□□□ 0.9
VPS33B-205ENST00000556096 CEBPAP49715 358 aaPredicted RBP20.68■□□□□ 0.9
VPS33B-205ENST00000556096 CFAP65Q6ZU64 1925 aaKnown RBP20.68■□□□□ 0.9
VPS33B-205ENST00000556096 ZNF326Q5BKZ1 582 aaKnown RBP20.67■□□□□ 0.9
VPS33B-205ENST00000556096 KDM2AQ9Y2K7 1162 aa20.67■□□□□ 0.9
VPS33B-205ENST00000556096 PRAG1Q86YV5 1406 aa20.65■□□□□ 0.9
VPS33B-205ENST00000556096 RGL3Q3MIN7 710 aa20.64■□□□□ 0.9
VPS33B-205ENST00000556096 PTPRMP28827 1452 aa20.64■□□□□ 0.89
VPS33B-205ENST00000556096 NPATQ14207 1427 aa20.63■□□□□ 0.89
VPS33B-205ENST00000556096 NEURL4Q96JN8 1562 aa20.63■□□□□ 0.89
VPS33B-205ENST00000556096 WASHC2AQ641Q2 1341 aa20.63■□□□□ 0.89
VPS33B-205ENST00000556096 STAC3Q96MF2 364 aa20.62■□□□□ 0.89
VPS33B-205ENST00000556096 CLTCL1P53675 1640 aa20.62■□□□□ 0.89
VPS33B-205ENST00000556096 ZMYM3Q14202 1370 aa20.61■□□□□ 0.89
VPS33B-205ENST00000556096 USP47Q96K76 1375 aa20.61■□□□□ 0.89
VPS33B-205ENST00000556096 C3P01024 1663 aa20.6■□□□□ 0.89
VPS33B-205ENST00000556096 CNTLNQ9NXG0 1405 aa20.59■□□□□ 0.89
VPS33B-205ENST00000556096 TRPM1Q7Z4N2 1603 aa20.59■□□□□ 0.89
VPS33B-205ENST00000556096 PPP6R1Q9UPN7 881 aa20.59■□□□□ 0.89
VPS33B-205ENST00000556096 PREX1Q8TCU6 1659 aa20.59■□□□□ 0.89
VPS33B-205ENST00000556096 ARHGAP31Q2M1Z3 1444 aa20.59■□□□□ 0.89
VPS33B-205ENST00000556096 CARD11Q9BXL7 1154 aa20.58■□□□□ 0.89
VPS33B-205ENST00000556096 CCDC7Q96M83 1385 aa20.58■□□□□ 0.89
VPS33B-205ENST00000556096 FBXO31Q5XUX0 539 aaPredicted RBP20.58■□□□□ 0.88
VPS33B-205ENST00000556096 UGGT1Q9NYU2 1555 aa20.57■□□□□ 0.88
VPS33B-205ENST00000556096 MROH2AA6NES4 1674 aa20.57■□□□□ 0.88
VPS33B-205ENST00000556096 POLR1AO95602 1720 aaPredicted RBP20.57■□□□□ 0.88
VPS33B-205ENST00000556096 GPRASP1Q5JY77 1395 aa20.56■□□□□ 0.88
VPS33B-205ENST00000556096 C11orf95C9JLR9 678 aaPredicted RBP20.56■□□□□ 0.88
VPS33B-205ENST00000556096 ROCK2O75116 1388 aaKnown RBP20.55■□□□□ 0.88
VPS33B-205ENST00000556096 SYNMO15061 1565 aa20.55■□□□□ 0.88
VPS33B-205ENST00000556096 LAMC1P11047 1609 aa20.55■□□□□ 0.88
VPS33B-205ENST00000556096 KIF1BO60333 1816 aa20.54■□□□□ 0.88
VPS33B-205ENST00000556096 NOS1P29475 1434 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms