RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 AAMPQ13685 434 aa21.66■■□□□ 1.06
SYNE3-204ENST00000555759 BRPF3Q9ULD4 1205 aa21.66■■□□□ 1.06
SYNE3-204ENST00000555759 RTF1Q92541 710 aaKnown RBP21.66■■□□□ 1.06
SYNE3-204ENST00000555759 CHMP4AQ9BY43 222 aa21.66■■□□□ 1.06
SYNE3-204ENST00000555759 NUP155O75694 1391 aa21.65■■□□□ 1.06
SYNE3-204ENST00000555759 TEX35Q5T0J7 233 aa21.65■■□□□ 1.06
SYNE3-204ENST00000555759 SRPK2P78362 688 aaKnown RBP21.65■■□□□ 1.06
SYNE3-204ENST00000555759 CCDC146Q8IYE0 955 aa21.64■■□□□ 1.05
SYNE3-204ENST00000555759 HDGFL2Q7Z4V5 671 aaPredicted RBP21.63■■□□□ 1.05
SYNE3-204ENST00000555759 NUCB2P80303 420 aa21.62■■□□□ 1.05
SYNE3-204ENST00000555759 KIF3AQ9Y496 699 aa21.62■■□□□ 1.05
SYNE3-204ENST00000555759 TRIM6-TRIM34B2RNG4 842 aa21.62■■□□□ 1.05
SYNE3-204ENST00000555759 ZKSCAN2Q63HK3 967 aa21.62■■□□□ 1.05
SYNE3-204ENST00000555759 GPATCH3Q96I76 525 aa21.62■■□□□ 1.05
SYNE3-204ENST00000555759 ISY1Q9ULR0 285 aaKnown RBP21.62■■□□□ 1.05
SYNE3-204ENST00000555759 SENP3Q9H4L4 574 aaPredicted RBP21.62■■□□□ 1.05
SYNE3-204ENST00000555759 GOLGA6L19H0YKK7 550 aa21.61■■□□□ 1.05
SYNE3-204ENST00000555759 HDAC5Q9UQL6 1122 aa21.61■■□□□ 1.05
SYNE3-204ENST00000555759 NOC3LQ8WTT2 800 aaKnown RBP21.6■■□□□ 1.05
SYNE3-204ENST00000555759 CCDC39Q9UFE4 941 aa21.6■■□□□ 1.05
SYNE3-204ENST00000555759 DIAPH3Q9NSV4 1193 aa21.6■■□□□ 1.05
SYNE3-204ENST00000555759 CNTLNQ9NXG0 1405 aa21.59■■□□□ 1.05
SYNE3-204ENST00000555759 RRP9O43818 475 aaKnown RBP21.59■■□□□ 1.05
SYNE3-204ENST00000555759 TPM3P06753 285 aa21.58■■□□□ 1.04
SYNE3-204ENST00000555759 MROH2BQ7Z745 1585 aa21.57■■□□□ 1.04
SYNE3-204ENST00000555759 NASPP49321 788 aaPredicted RBP21.57■■□□□ 1.04
SYNE3-204ENST00000555759 R3HCC1Q9Y3T6 440 aaKnown RBP21.57■■□□□ 1.04
SYNE3-204ENST00000555759 LMOD3Q0VAK6 560 aa21.57■■□□□ 1.04
SYNE3-204ENST00000555759 COG6Q9Y2V7 657 aa21.56■■□□□ 1.04
SYNE3-204ENST00000555759 PAK3O75914 559 aaPredicted RBP21.56■■□□□ 1.04
SYNE3-204ENST00000555759 REC8O95072 547 aa21.55■■□□□ 1.04
SYNE3-204ENST00000555759 STK31Q9BXU1 1019 aa21.55■■□□□ 1.04
SYNE3-204ENST00000555759 FOXD4L5Q5VV16 416 aaPredicted RBP21.55■■□□□ 1.04
SYNE3-204ENST00000555759 NOL8Q76FK4 1167 aaKnown RBP21.55■■□□□ 1.04
SYNE3-204ENST00000555759 FOXD4L4Q8WXT5 416 aaPredicted RBP21.55■■□□□ 1.04
SYNE3-204ENST00000555759 USP47Q96K76 1375 aa21.55■■□□□ 1.04
SYNE3-204ENST00000555759 BECN2A8MW95 431 aa21.55■■□□□ 1.04
SYNE3-204ENST00000555759 CHMP4CQ96CF2 233 aa21.54■■□□□ 1.04
SYNE3-204ENST00000555759 DDX19BQ9UMR2 479 aa21.54■■□□□ 1.04
SYNE3-204ENST00000555759 ST20-MTHFSA0A0A6YYL1 179 aa21.54■■□□□ 1.04
SYNE3-204ENST00000555759 TRAK2O60296 914 aa21.54■■□□□ 1.04
SYNE3-204ENST00000555759 ANKRD45Q5TZF3 282 aa21.54■■□□□ 1.04
SYNE3-204ENST00000555759 CCDC7Q96M83 1385 aa21.54■■□□□ 1.04
SYNE3-204ENST00000555759 EIF4G1Q04637 1599 aaKnown RBP21.53■■□□□ 1.04
SYNE3-204ENST00000555759 C22orf23Q9BZE7 217 aa21.53■■□□□ 1.04
SYNE3-204ENST00000555759 CCDC173Q0VFZ6 552 aa21.53■■□□□ 1.04
SYNE3-204ENST00000555759 CCDC18Q5T9S5 1454 aa21.53■■□□□ 1.04
SYNE3-204ENST00000555759 CCDC66A2RUB6 948 aa21.52■■□□□ 1.04
SYNE3-204ENST00000555759 HSP90B1P14625 803 aaKnown RBP21.52■■□□□ 1.04
SYNE3-204ENST00000555759 PANK3Q9H999 370 aa21.52■■□□□ 1.04
SYNE3-204ENST00000555759 HMGN5P82970 282 aaKnown RBP21.52■■□□□ 1.04
SYNE3-204ENST00000555759 A0A0U1RQG5 324 aaPredicted RBP21.52■■□□□ 1.03
SYNE3-204ENST00000555759 RAPGEF2Q9Y4G8 1499 aa21.51■■□□□ 1.03
SYNE3-204ENST00000555759 FRAT2O75474 233 aaPredicted RBP21.51■■□□□ 1.03
SYNE3-204ENST00000555759 NOM1Q5C9Z4 860 aaKnown RBP21.5■■□□□ 1.03
SYNE3-204ENST00000555759 ARGLU1Q9NWB6 273 aaPredicted RBP21.49■■□□□ 1.03
SYNE3-204ENST00000555759 SPAG9O60271 1321 aaKnown RBP21.49■■□□□ 1.03
SYNE3-204ENST00000555759 ZNF592Q92610 1267 aa21.49■■□□□ 1.03
SYNE3-204ENST00000555759 BACH2Q9BYV9 841 aa21.49■■□□□ 1.03
SYNE3-204ENST00000555759 SF3A1Q15459 793 aaKnown RBP21.47■■□□□ 1.03
SYNE3-204ENST00000555759 BRD4O60885 1362 aaPredicted RBP21.45■■□□□ 1.02
SYNE3-204ENST00000555759 TOP2AP11388 1531 aaKnown RBP21.45■■□□□ 1.02
SYNE3-204ENST00000555759 TERF2IPQ9NYB0 399 aa21.45■■□□□ 1.02
SYNE3-204ENST00000555759 MCTP1Q6DN14 999 aa21.44■■□□□ 1.02
SYNE3-204ENST00000555759 TULP1O00294 542 aaPredicted RBP21.44■■□□□ 1.02
SYNE3-204ENST00000555759 CCDC70Q6NSX1 233 aa21.44■■□□□ 1.02
SYNE3-204ENST00000555759 DZIP1LQ8IYY4 767 aaKnown RBP21.44■■□□□ 1.02
SYNE3-204ENST00000555759 A0A0G2JS52 829 aa21.43■■□□□ 1.02
SYNE3-204ENST00000555759 H3BQV1 296 aa21.43■■□□□ 1.02
SYNE3-204ENST00000555759 IFFO2Q5TF58 517 aa21.43■■□□□ 1.02
SYNE3-204ENST00000555759 KIF7Q2M1P5 1343 aa21.42■■□□□ 1.02
SYNE3-204ENST00000555759 PODXL2Q9NZ53 605 aa21.42■■□□□ 1.02
SYNE3-204ENST00000555759 CCAR2Q8N163 923 aaKnown RBP21.42■■□□□ 1.02
SYNE3-204ENST00000555759 MBD3O95983 291 aa21.41■■□□□ 1.02
SYNE3-204ENST00000555759 APAF1O14727 1248 aa21.41■■□□□ 1.02
SYNE3-204ENST00000555759 PLEKHG5O94827 1062 aa21.41■■□□□ 1.02
SYNE3-204ENST00000555759 BCL2L13Q9BXK5 485 aa21.41■■□□□ 1.02
SYNE3-204ENST00000555759 CWC15Q9P013 229 aaKnown RBP21.41■■□□□ 1.02
SYNE3-204ENST00000555759 TPM1P09493 284 aa21.4■■□□□ 1.02
SYNE3-204ENST00000555759 HDGFP51858 240 aaKnown RBP21.4■■□□□ 1.02
SYNE3-204ENST00000555759 RSPH4AQ5TD94 716 aa21.39■■□□□ 1.02
SYNE3-204ENST00000555759 INTS3Q68E01 1043 aaKnown RBP21.39■■□□□ 1.02
SYNE3-204ENST00000555759 LETM1O95202 739 aaPredicted RBP21.39■■□□□ 1.02
SYNE3-204ENST00000555759 IFT57Q9NWB7 429 aa21.39■■□□□ 1.01
SYNE3-204ENST00000555759 RRP7AQ9Y3A4 280 aaKnown RBP21.39■■□□□ 1.01
SYNE3-204ENST00000555759 SAFB2Q14151 953 aaKnown RBP eCLIP21.39■■□□□ 1.01
SYNE3-204ENST00000555759 SLC4A10Q6U841 1118 aa21.39■■□□□ 1.01
SYNE3-204ENST00000555759 FAM184AQ8NB25 1140 aa21.39■■□□□ 1.01
SYNE3-204ENST00000555759 ACBD3Q9H3P7 528 aa21.39■■□□□ 1.01
SYNE3-204ENST00000555759 HOMER1Q86YM7 354 aa21.38■■□□□ 1.01
SYNE3-204ENST00000555759 TSR1Q2NL82 804 aaKnown RBP21.37■■□□□ 1.01
SYNE3-204ENST00000555759 UACAQ9BZF9 1416 aa21.37■■□□□ 1.01
SYNE3-204ENST00000555759 RILPL2Q969X0 211 aa21.37■■□□□ 1.01
SYNE3-204ENST00000555759 SMG6Q86US8 1419 aaKnown RBP21.36■■□□□ 1.01
SYNE3-204ENST00000555759 MSH5O43196 834 aa21.36■■□□□ 1.01
SYNE3-204ENST00000555759 FOXD4L6Q3SYB3 417 aaPredicted RBP21.36■■□□□ 1.01
SYNE3-204ENST00000555759 FOXD4L3Q6VB84 417 aaPredicted RBP21.36■■□□□ 1.01
SYNE3-204ENST00000555759 GRPEL1Q9HAV7 217 aa21.36■■□□□ 1.01
SYNE3-204ENST00000555759 FHOD3Q2V2M9 1422 aa21.36■■□□□ 1.01
SYNE3-204ENST00000555759 CCDC144AA2RUR9 1427 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms