RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 PDE3BQ13370 1112 aa7.55□□□□□ -1.2
VPS50-220ENST00000544910 DNAJC5BQ9UF47 199 aa7.55□□□□□ -1.2
VPS50-220ENST00000544910 DNMT1P26358 1616 aaKnown RBP7.54□□□□□ -1.2
VPS50-220ENST00000544910 ARHGEF11O15085 1522 aa7.54□□□□□ -1.2
VPS50-220ENST00000544910 TARBP1Q13395 1621 aaKnown RBP7.54□□□□□ -1.2
VPS50-220ENST00000544910 EIF4G3O43432 1585 aaKnown RBP7.54□□□□□ -1.2
VPS50-220ENST00000544910 NUP153P49790 1475 aaKnown RBP7.54□□□□□ -1.2
VPS50-220ENST00000544910 CCDC141Q6ZP82 1450 aa7.53□□□□□ -1.2
VPS50-220ENST00000544910 PANK3Q9H999 370 aa7.53□□□□□ -1.2
VPS50-220ENST00000544910 NCOA1Q15788 1441 aa7.53□□□□□ -1.2
VPS50-220ENST00000544910 KIF3BO15066 747 aa7.53□□□□□ -1.2
VPS50-220ENST00000544910 BRD4O60885 1362 aaPredicted RBP7.52□□□□□ -1.21
VPS50-220ENST00000544910 ADGBQ8N7X0 1667 aa7.51□□□□□ -1.21
VPS50-220ENST00000544910 MORC1Q86VD1 984 aa7.51□□□□□ -1.21
VPS50-220ENST00000544910 GPATCH8Q9UKJ3 1502 aaKnown RBP7.51□□□□□ -1.21
VPS50-220ENST00000544910 SENP3Q9H4L4 574 aaPredicted RBP7.51□□□□□ -1.21
VPS50-220ENST00000544910 TNNT2P45379 298 aaPredicted RBP7.51□□□□□ -1.21
VPS50-220ENST00000544910 MAGI3Q5TCQ9 1506 aa7.5□□□□□ -1.21
VPS50-220ENST00000544910 TCERG1O14776 1098 aaKnown RBP7.5□□□□□ -1.21
VPS50-220ENST00000544910 RRP1P56182 461 aaKnown RBP7.5□□□□□ -1.21
VPS50-220ENST00000544910 MAPK8IP3Q9UPT6 1336 aa7.5□□□□□ -1.21
VPS50-220ENST00000544910 NEUROD2Q15784 382 aa7.49□□□□□ -1.21
VPS50-220ENST00000544910 DISP1Q96F81 1524 aa7.49□□□□□ -1.21
VPS50-220ENST00000544910 SMG6Q86US8 1419 aaKnown RBP7.49□□□□□ -1.21
VPS50-220ENST00000544910 FANCIQ9NVI1 1328 aa7.49□□□□□ -1.21
VPS50-220ENST00000544910 PPM1GO15355 546 aaPredicted RBP7.49□□□□□ -1.21
VPS50-220ENST00000544910 BECN1Q14457 450 aa7.49□□□□□ -1.21
VPS50-220ENST00000544910 GGT6Q6P531 493 aa7.49□□□□□ -1.21
VPS50-220ENST00000544910 POGKQ9P215 609 aa7.49□□□□□ -1.21
VPS50-220ENST00000544910 FTSJ3Q8IY81 847 aaKnown RBP7.48□□□□□ -1.21
VPS50-220ENST00000544910 GOLGA2Q08379 1002 aa7.48□□□□□ -1.21
VPS50-220ENST00000544910 FRAT1Q92837 279 aaPredicted RBP7.47□□□□□ -1.21
VPS50-220ENST00000544910 STAC3Q96MF2 364 aa7.47□□□□□ -1.21
VPS50-220ENST00000544910 PNNQ9H307 717 aaKnown RBP7.47□□□□□ -1.21
VPS50-220ENST00000544910 SHANK2Q9UPX8 1470 aa7.47□□□□□ -1.21
VPS50-220ENST00000544910 ERBINQ96RT1 1412 aa7.47□□□□□ -1.21
VPS50-220ENST00000544910 C11orf95C9JLR9 678 aaPredicted RBP7.47□□□□□ -1.21
VPS50-220ENST00000544910 RGS3P49796 1198 aa7.47□□□□□ -1.21
VPS50-220ENST00000544910 CCDC184Q52MB2 194 aa7.47□□□□□ -1.21
VPS50-220ENST00000544910 RALGAPBQ86X10 1494 aa7.46□□□□□ -1.21
VPS50-220ENST00000544910 MS4A1P11836 297 aa7.46□□□□□ -1.21
VPS50-220ENST00000544910 CCDC146Q8IYE0 955 aa7.46□□□□□ -1.21
VPS50-220ENST00000544910 MYH16Q9H6N6 1097 aa7.46□□□□□ -1.21
VPS50-220ENST00000544910 LAS1LQ9Y4W2 734 aaKnown RBP7.46□□□□□ -1.22
VPS50-220ENST00000544910 SRPK2P78362 688 aaKnown RBP7.46□□□□□ -1.22
VPS50-220ENST00000544910 CEP170Q5SW79 1584 aa7.46□□□□□ -1.22
VPS50-220ENST00000544910 IPO9Q96P70 1041 aaKnown RBP7.46□□□□□ -1.22
VPS50-220ENST00000544910 EXOC6Q8TAG9 804 aa7.45□□□□□ -1.22
VPS50-220ENST00000544910 U2SURPO15042 1029 aaKnown RBP7.45□□□□□ -1.22
VPS50-220ENST00000544910 ATP10BO94823 1461 aa7.45□□□□□ -1.22
VPS50-220ENST00000544910 WASHC2CQ9Y4E1 1318 aa7.45□□□□□ -1.22
VPS50-220ENST00000544910 ADGRL2O95490 1459 aa7.45□□□□□ -1.22
VPS50-220ENST00000544910 HSP90AA1P07900 732 aaKnown RBP7.44□□□□□ -1.22
VPS50-220ENST00000544910 PZPP20742 1482 aa7.44□□□□□ -1.22
VPS50-220ENST00000544910 SAFB2Q14151 953 aaKnown RBP eCLIP7.43□□□□□ -1.22
VPS50-220ENST00000544910 NBPF1Q3BBV0 1214 aa7.43□□□□□ -1.22
VPS50-220ENST00000544910 KDM6BO15054 1643 aa7.43□□□□□ -1.22
VPS50-220ENST00000544910 HDGFL2Q7Z4V5 671 aaPredicted RBP7.43□□□□□ -1.22
VPS50-220ENST00000544910 FAM135AQ9P2D6 1515 aa7.43□□□□□ -1.22
VPS50-220ENST00000544910 PNISRQ8TF01 805 aaKnown RBP7.43□□□□□ -1.22
VPS50-220ENST00000544910 CRBNQ96SW2 442 aa7.43□□□□□ -1.22
VPS50-220ENST00000544910 STK26Q9P289 416 aa7.43□□□□□ -1.22
VPS50-220ENST00000544910 TEX14Q8IWB6 1497 aa7.43□□□□□ -1.22
VPS50-220ENST00000544910 EIF2AK4Q9P2K8 1649 aaKnown RBP7.43□□□□□ -1.22
VPS50-220ENST00000544910 SYCP2Q9BX26 1530 aa7.43□□□□□ -1.22
VPS50-220ENST00000544910 ARHGEF12Q9NZN5 1544 aa7.42□□□□□ -1.22
VPS50-220ENST00000544910 NUP160Q12769 1436 aa7.42□□□□□ -1.22
VPS50-220ENST00000544910 DUOX2Q9NRD8 1548 aa7.42□□□□□ -1.22
VPS50-220ENST00000544910 CENPJQ9HC77 1338 aaPredicted RBP7.42□□□□□ -1.22
VPS50-220ENST00000544910 PLIN1O60240 522 aa7.42□□□□□ -1.22
VPS50-220ENST00000544910 PLPPR3Q6T4P5 718 aa7.42□□□□□ -1.22
VPS50-220ENST00000544910 E9PSI1 815 aa7.42□□□□□ -1.22
VPS50-220ENST00000544910 CENPQQ7L2Z9 268 aaPredicted RBP7.42□□□□□ -1.22
VPS50-220ENST00000544910 TRAK1Q9UPV9 953 aa7.42□□□□□ -1.22
VPS50-220ENST00000544910 SCAPERQ9BY12 1400 aa7.42□□□□□ -1.22
VPS50-220ENST00000544910 DEKP35659 375 aaKnown RBP7.42□□□□□ -1.22
VPS50-220ENST00000544910 CHMP4BQ9H444 224 aaKnown RBP7.41□□□□□ -1.22
VPS50-220ENST00000544910 LRRIQ1Q96JM4 1722 aa7.41□□□□□ -1.22
VPS50-220ENST00000544910 TRIM44Q96DX7 344 aaPredicted RBP7.41□□□□□ -1.22
VPS50-220ENST00000544910 U2AF1L5P0DN76 240 aaPredicted RBP7.41□□□□□ -1.22
VPS50-220ENST00000544910 U2AF1Q01081 240 aaKnown RBP eCLIP7.41□□□□□ -1.22
VPS50-220ENST00000544910 NUTM2DQ5VT03 806 aaPredicted RBP7.41□□□□□ -1.22
VPS50-220ENST00000544910 PMFBP1Q8TBY8 1022 aa7.41□□□□□ -1.22
VPS50-220ENST00000544910 CGNL1Q0VF96 1302 aa7.4□□□□□ -1.22
VPS50-220ENST00000544910 EVC2Q86UK5 1308 aa7.4□□□□□ -1.22
VPS50-220ENST00000544910 PPP2R1AP30153 589 aa7.4□□□□□ -1.22
VPS50-220ENST00000544910 AFAP1Q8N556 730 aa7.4□□□□□ -1.22
VPS50-220ENST00000544910 PDE4AP27815 886 aa7.4□□□□□ -1.23
VPS50-220ENST00000544910 TERF2IPQ9NYB0 399 aa7.4□□□□□ -1.23
VPS50-220ENST00000544910 HDGFP51858 240 aaKnown RBP7.39□□□□□ -1.23
VPS50-220ENST00000544910 VGFO15240 615 aaPredicted RBP7.39□□□□□ -1.23
VPS50-220ENST00000544910 NGEFQ8N5V2 710 aa7.39□□□□□ -1.23
VPS50-220ENST00000544910 RWDD1Q9H446 243 aaPredicted RBP7.39□□□□□ -1.23
VPS50-220ENST00000544910 ARHGEF5Q12774 1597 aa7.39□□□□□ -1.23
VPS50-220ENST00000544910 ADCY10Q96PN6 1610 aa7.38□□□□□ -1.23
VPS50-220ENST00000544910 UHRF1BP1Q6BDS2 1440 aa7.38□□□□□ -1.23
VPS50-220ENST00000544910 ADAMTS8Q9UP79 889 aa7.38□□□□□ -1.23
VPS50-220ENST00000544910 PRAG1Q86YV5 1406 aa7.38□□□□□ -1.23
VPS50-220ENST00000544910 ABCA8O94911 1581 aa7.37□□□□□ -1.23
VPS50-220ENST00000544910 MAST1Q9Y2H9 1570 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms