RNA–Protein interactions for RNA: ENST00000539197.5

CCDC7-209, Transcript of coiled-coil domain containing 7, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC7, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC7-209ENST00000539197 E2F4Q16254 413 aa15.38■□□□□ 0.05
CCDC7-209ENST00000539197 RBM33Q96EV2 1170 aaKnown RBP15.38■□□□□ 0.05
CCDC7-209ENST00000539197 PPP1R3GB7ZBB8 358 aa15.37■□□□□ 0.05
CCDC7-209ENST00000539197 EPAS1Q99814 870 aa15.36■□□□□ 0.05
CCDC7-209ENST00000539197 PDIA6Q15084 440 aa15.34■□□□□ 0.05
CCDC7-209ENST00000539197 C6orf132Q5T0Z8 1188 aa15.34■□□□□ 0.05
CCDC7-209ENST00000539197 MRPL50Q8N5N7 158 aaKnown RBP15.33■□□□□ 0.04
CCDC7-209ENST00000539197 TSHZ2Q9NRE2 1034 aa15.33■□□□□ 0.04
CCDC7-209ENST00000539197 WDR70Q9NW82 654 aa15.33■□□□□ 0.04
CCDC7-209ENST00000539197 GOLGA8CPA6NN73 597 aa15.32■□□□□ 0.04
CCDC7-209ENST00000539197 PTPN5P54829 565 aa15.32■□□□□ 0.04
CCDC7-209ENST00000539197 NBPF3Q9H094 633 aa15.31■□□□□ 0.04
CCDC7-209ENST00000539197 NBR1Q14596 966 aa15.3■□□□□ 0.04
CCDC7-209ENST00000539197 PLA2G2EQ9NZK7 142 aa15.3■□□□□ 0.04
CCDC7-209ENST00000539197 SPDYE16A6NNV3 312 aaPredicted RBP15.28■□□□□ 0.04
CCDC7-209ENST00000539197 PRIM1P49642 420 aaKnown RBP15.28■□□□□ 0.04
CCDC7-209ENST00000539197 TSR1Q2NL82 804 aaKnown RBP15.28■□□□□ 0.04
CCDC7-209ENST00000539197 THSD4Q6ZMP0 1018 aa15.26■□□□□ 0.03
CCDC7-209ENST00000539197 WNT2BQ93097 391 aa15.26■□□□□ 0.03
CCDC7-209ENST00000539197 RABGEF1Q9UJ41 708 aa15.26■□□□□ 0.03
CCDC7-209ENST00000539197 KIAA1468Q9P260 1216 aa15.25■□□□□ 0.03
CCDC7-209ENST00000539197 EN1Q05925 392 aaPredicted RBP15.24■□□□□ 0.03
CCDC7-209ENST00000539197 GRXCR2A6NFK2 248 aa15.23■□□□□ 0.03
CCDC7-209ENST00000539197 MAP3K7O43318 606 aa15.23■□□□□ 0.03
CCDC7-209ENST00000539197 ARIH1Q9Y4X5 557 aaPredicted RBP15.23■□□□□ 0.03
CCDC7-209ENST00000539197 SEPT9Q9UHD8 586 aaPredicted RBP15.21■□□□□ 0.03
CCDC7-209ENST00000539197 ONECUT3O60422 494 aaPredicted RBP15.19■□□□□ 0.02
CCDC7-209ENST00000539197 TRIM6-TRIM34B2RNG4 842 aa15.18■□□□□ 0.02
CCDC7-209ENST00000539197 BCAMP50895 628 aa15.15■□□□□ 0.02
CCDC7-209ENST00000539197 LAPTM4BQ86VI4 370 aa15.15■□□□□ 0.02
CCDC7-209ENST00000539197 ANKK1Q8NFD2 765 aa15.15■□□□□ 0.02
CCDC7-209ENST00000539197 TSKSQ9UJT2 592 aa15.15■□□□□ 0.02
CCDC7-209ENST00000539197 OSBPP22059 807 aa15.14■□□□□ 0.01
CCDC7-209ENST00000539197 ZFRQ96KR1 1074 aaKnown RBP15.12■□□□□ 0.01
CCDC7-209ENST00000539197 CDHR5Q9HBB8 845 aa15.12■□□□□ 0.01
CCDC7-209ENST00000539197 FAM198AQ9UFP1 575 aa15.11■□□□□ 0.01
CCDC7-209ENST00000539197 KCNV2Q8TDN2 545 aa15.1■□□□□ 0.01
CCDC7-209ENST00000539197 C3orf80F5H4A9 247 aa15.09■□□□□ 0.01
CCDC7-209ENST00000539197 CDCA7LQ96GN5 454 aa15.07■□□□□ 0
CCDC7-209ENST00000539197 SOWAHBA6NEL2 793 aa15.06■□□□□ 0
CCDC7-209ENST00000539197 SMAPO00193 183 aa15.06■□□□□ 0
CCDC7-209ENST00000539197 PACS2Q86VP3 889 aa15.05■□□□□ -0
CCDC7-209ENST00000539197 MLLT3P42568 568 aaPredicted RBP15.04■□□□□ -0
CCDC7-209ENST00000539197 PRSS12P56730 875 aa15.04■□□□□ -0
CCDC7-209ENST00000539197 FAM98CQ17RN3 349 aaKnown RBP15.04■□□□□ -0
CCDC7-209ENST00000539197 CERKQ8TCT0 537 aa15.03■□□□□ -0
CCDC7-209ENST00000539197 WBP1LQ9NX94 342 aa15.02■□□□□ -0
CCDC7-209ENST00000539197 IFFO2Q5TF58 517 aa14.99□□□□□ -0.01
CCDC7-209ENST00000539197 ARHGEF1Q92888 912 aaKnown RBP14.99□□□□□ -0.01
CCDC7-209ENST00000539197 NPDC1Q9NQX5 325 aaPredicted RBP14.98□□□□□ -0.01
CCDC7-209ENST00000539197 NYAP1Q6ZVC0 841 aa14.96□□□□□ -0.01
CCDC7-209ENST00000539197 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.96□□□□□ -0.01
CCDC7-209ENST00000539197 LRCH3Q96II8 777 aa14.95□□□□□ -0.02
CCDC7-209ENST00000539197 PLCB2Q00722 1185 aa14.94□□□□□ -0.02
CCDC7-209ENST00000539197 TATDN2Q93075 761 aa14.94□□□□□ -0.02
CCDC7-209ENST00000539197 PNMA3Q9UL41 463 aa14.94□□□□□ -0.02
CCDC7-209ENST00000539197 HPS5Q9UPZ3 1129 aa14.94□□□□□ -0.02
CCDC7-209ENST00000539197 NUDT18Q6ZVK8 323 aa14.92□□□□□ -0.02
CCDC7-209ENST00000539197 SAMD7Q7Z3H4 446 aa14.92□□□□□ -0.02
CCDC7-209ENST00000539197 TSR3Q9UJK0 312 aaKnown RBP14.91□□□□□ -0.02
CCDC7-209ENST00000539197 NBPF26B4DH59 902 aa14.9□□□□□ -0.02
CCDC7-209ENST00000539197 PADI6Q6TGC4 694 aa14.9□□□□□ -0.02
CCDC7-209ENST00000539197 RBM27Q9P2N5 1060 aaKnown RBP14.88□□□□□ -0.03
CCDC7-209ENST00000539197 ITGBL1O95965 494 aaPredicted RBP14.87□□□□□ -0.03
CCDC7-209ENST00000539197 TTC13Q8NBP0 860 aa14.87□□□□□ -0.03
CCDC7-209ENST00000539197 A0A0G2JS52 829 aa14.86□□□□□ -0.03
CCDC7-209ENST00000539197 SEMA3EO15041 775 aa14.86□□□□□ -0.03
CCDC7-209ENST00000539197 RGS20O76081 388 aa14.83□□□□□ -0.04
CCDC7-209ENST00000539197 PPP4CP60510 307 aa14.82□□□□□ -0.04
CCDC7-209ENST00000539197 P3H3Q8IVL6 736 aa14.82□□□□□ -0.04
CCDC7-209ENST00000539197 HDGFP51858 240 aaKnown RBP14.79□□□□□ -0.04
CCDC7-209ENST00000539197 RNF40O75150 1001 aa14.78□□□□□ -0.04
CCDC7-209ENST00000539197 KCNC4Q03721 635 aa14.78□□□□□ -0.04
CCDC7-209ENST00000539197 PTGDRQ13258 359 aa14.78□□□□□ -0.04
CCDC7-209ENST00000539197 NUTM2FA1L443 756 aa14.76□□□□□ -0.05
CCDC7-209ENST00000539197 HAP1P54257 671 aaPredicted RBP14.75□□□□□ -0.05
CCDC7-209ENST00000539197 FAM161AQ3B820 660 aa14.75□□□□□ -0.05
CCDC7-209ENST00000539197 SWT1Q5T5J6 900 aaKnown RBP14.75□□□□□ -0.05
CCDC7-209ENST00000539197 EYA1Q99502 592 aa14.75□□□□□ -0.05
CCDC7-209ENST00000539197 APLP1P51693 650 aa14.71□□□□□ -0.05
CCDC7-209ENST00000539197 TJAP1Q5JTD0 557 aa14.7□□□□□ -0.06
CCDC7-209ENST00000539197 KDM2AQ9Y2K7 1162 aa14.7□□□□□ -0.06
CCDC7-209ENST00000539197 RBM26Q5T8P6 1007 aaKnown RBP14.67□□□□□ -0.06
CCDC7-209ENST00000539197 NECTIN2Q92692 538 aa14.67□□□□□ -0.06
CCDC7-209ENST00000539197 MTRQ99707 1265 aa14.67□□□□□ -0.06
CCDC7-209ENST00000539197 TESPA1A2RU30 521 aaPredicted RBP14.66□□□□□ -0.06
CCDC7-209ENST00000539197 ADGRG1Q9Y653 693 aa14.66□□□□□ -0.06
CCDC7-209ENST00000539197 SLC4A3P48751 1232 aa14.65□□□□□ -0.06
CCDC7-209ENST00000539197 SLF2Q8IX21 1173 aa14.65□□□□□ -0.06
CCDC7-209ENST00000539197 ZNF516Q92618 1163 aa14.65□□□□□ -0.06
CCDC7-209ENST00000539197 FCHSD2O94868 740 aa14.62□□□□□ -0.07
CCDC7-209ENST00000539197 IL21Q9HBE4 155 aa14.61□□□□□ -0.07
CCDC7-209ENST00000539197 RBM46Q8TBY0 533 aaKnown RBP14.6□□□□□ -0.07
CCDC7-209ENST00000539197 IRX2Q9BZI1 471 aaPredicted RBP14.59□□□□□ -0.07
CCDC7-209ENST00000539197 RCCD1A6NED2 376 aa14.58□□□□□ -0.08
CCDC7-209ENST00000539197 FECHP22830 423 aa14.58□□□□□ -0.08
CCDC7-209ENST00000539197 DNAJB2P25686 324 aa14.58□□□□□ -0.08
CCDC7-209ENST00000539197 COPS2P61201 443 aa14.58□□□□□ -0.08
CCDC7-209ENST00000539197 NKX2-3Q8TAU0 364 aa14.57□□□□□ -0.08
CCDC7-209ENST00000539197 TMEM134Q9H6X4 195 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms