RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 PHF14O94880 888 aa10.06□□□□□ -0.8
USP48-215ENST00000534705 TYW1BQ6NUM6 668 aa10.06□□□□□ -0.8
USP48-215ENST00000534705 SOWAHBA6NEL2 793 aa10.05□□□□□ -0.8
USP48-215ENST00000534705 PROX2Q3B8N5 592 aa10.04□□□□□ -0.8
USP48-215ENST00000534705 COL9A1P20849 921 aa10.03□□□□□ -0.8
USP48-215ENST00000534705 GTPBP6O43824 516 aaPredicted RBP10.02□□□□□ -0.81
USP48-215ENST00000534705 BCAMP50895 628 aa10.02□□□□□ -0.81
USP48-215ENST00000534705 KCNC4Q03721 635 aa10.02□□□□□ -0.81
USP48-215ENST00000534705 ZFRQ96KR1 1074 aaKnown RBP10.02□□□□□ -0.81
USP48-215ENST00000534705 EMILIN3Q9NT22 766 aa10.02□□□□□ -0.81
USP48-215ENST00000534705 KIAA1468Q9P260 1216 aa10.01□□□□□ -0.81
USP48-215ENST00000534705 AMER1Q5JTC6 1135 aaPredicted RBP10□□□□□ -0.81
USP48-215ENST00000534705 Q6ZNB5 142 aa10□□□□□ -0.81
USP48-215ENST00000534705 EPAS1Q99814 870 aa10□□□□□ -0.81
USP48-215ENST00000534705 LAPTM4AQ15012 233 aa9.98□□□□□ -0.81
USP48-215ENST00000534705 WBP1LQ9NX94 342 aa9.97□□□□□ -0.81
USP48-215ENST00000534705 C6orf132Q5T0Z8 1188 aa9.96□□□□□ -0.82
USP48-215ENST00000534705 FAM98CQ17RN3 349 aaKnown RBP9.95□□□□□ -0.82
USP48-215ENST00000534705 TSR3Q9UJK0 312 aaKnown RBP9.95□□□□□ -0.82
USP48-215ENST00000534705 TRIM6-TRIM34B2RNG4 842 aa9.94□□□□□ -0.82
USP48-215ENST00000534705 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.94□□□□□ -0.82
USP48-215ENST00000534705 LRCH3Q96II8 777 aa9.93□□□□□ -0.82
USP48-215ENST00000534705 SEPT9Q9UHD8 586 aaPredicted RBP9.92□□□□□ -0.82
USP48-215ENST00000534705 CAMK2BQ13554 666 aa9.9□□□□□ -0.82
USP48-215ENST00000534705 HPS5Q9UPZ3 1129 aa9.9□□□□□ -0.82
USP48-215ENST00000534705 PACS2Q86VP3 889 aa9.88□□□□□ -0.83
USP48-215ENST00000534705 RTN4Q9NQC3 1192 aaKnown RBP9.87□□□□□ -0.83
USP48-215ENST00000534705 PPP4CP60510 307 aa9.86□□□□□ -0.83
USP48-215ENST00000534705 RBM33Q96EV2 1170 aaKnown RBP9.86□□□□□ -0.83
USP48-215ENST00000534705 DPYSL4O14531 572 aa9.85□□□□□ -0.83
USP48-215ENST00000534705 GFRA3O60609 400 aa9.85□□□□□ -0.83
USP48-215ENST00000534705 CADPS2Q86UW7 1296 aa9.85□□□□□ -0.83
USP48-215ENST00000534705 TRAF7Q6Q0C0 670 aa9.84□□□□□ -0.83
USP48-215ENST00000534705 DDX12PQ92771 950 aa9.81□□□□□ -0.84
USP48-215ENST00000534705 DCAF8L2P0C7V8 631 aa9.8□□□□□ -0.84
USP48-215ENST00000534705 EN1Q05925 392 aaPredicted RBP9.8□□□□□ -0.84
USP48-215ENST00000534705 MAP3K7O43318 606 aa9.79□□□□□ -0.84
USP48-215ENST00000534705 TSKSQ9UJT2 592 aa9.79□□□□□ -0.84
USP48-215ENST00000534705 NBR1Q14596 966 aa9.78□□□□□ -0.84
USP48-215ENST00000534705 TJAP1Q5JTD0 557 aa9.78□□□□□ -0.84
USP48-215ENST00000534705 CERKQ8TCT0 537 aa9.78□□□□□ -0.84
USP48-215ENST00000534705 PRKD2Q9BZL6 878 aa9.78□□□□□ -0.84
USP48-215ENST00000534705 IL21Q9HBE4 155 aa9.78□□□□□ -0.84
USP48-215ENST00000534705 NRG2O14511 850 aaPredicted RBP9.77□□□□□ -0.85
USP48-215ENST00000534705 V9GY48 417 aaPredicted RBP9.77□□□□□ -0.85
USP48-215ENST00000534705 SPDYE16A6NNV3 312 aaPredicted RBP9.76□□□□□ -0.85
USP48-215ENST00000534705 HDGFP51858 240 aaKnown RBP9.75□□□□□ -0.85
USP48-215ENST00000534705 PRSS12P56730 875 aa9.75□□□□□ -0.85
USP48-215ENST00000534705 TSR1Q2NL82 804 aaKnown RBP9.75□□□□□ -0.85
USP48-215ENST00000534705 SAMD7Q7Z3H4 446 aa9.75□□□□□ -0.85
USP48-215ENST00000534705 CDCA7LQ96GN5 454 aa9.75□□□□□ -0.85
USP48-215ENST00000534705 PDIA6Q15084 440 aa9.74□□□□□ -0.85
USP48-215ENST00000534705 PPP1R18Q6NYC8 613 aa9.73□□□□□ -0.85
USP48-215ENST00000534705 MTRQ99707 1265 aa9.73□□□□□ -0.85
USP48-215ENST00000534705 NBPF26B4DH59 902 aa9.72□□□□□ -0.85
USP48-215ENST00000534705 LCE2BO14633 110 aa9.72□□□□□ -0.85
USP48-215ENST00000534705 NECTIN2Q92692 538 aa9.72□□□□□ -0.85
USP48-215ENST00000534705 TATDN2Q93075 761 aa9.71□□□□□ -0.86
USP48-215ENST00000534705 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.71□□□□□ -0.86
USP48-215ENST00000534705 SMAPO00193 183 aa9.7□□□□□ -0.86
USP48-215ENST00000534705 PNMA3Q9UL41 463 aa9.7□□□□□ -0.86
USP48-215ENST00000534705 GGCXP38435 758 aa9.69□□□□□ -0.86
USP48-215ENST00000534705 FAM198AQ9UFP1 575 aa9.66□□□□□ -0.86
USP48-215ENST00000534705 ZNF787Q6DD87 383 aa9.65□□□□□ -0.86
USP48-215ENST00000534705 RBM27Q9P2N5 1060 aaKnown RBP9.65□□□□□ -0.86
USP48-215ENST00000534705 PDZRN3Q9UPQ7 1066 aa9.65□□□□□ -0.86
USP48-215ENST00000534705 RNF40O75150 1001 aa9.64□□□□□ -0.87
USP48-215ENST00000534705 ZNF516Q92618 1163 aa9.64□□□□□ -0.87
USP48-215ENST00000534705 TMUB1Q9BVT8 246 aa9.64□□□□□ -0.87
USP48-215ENST00000534705 NUDT18Q6ZVK8 323 aa9.63□□□□□ -0.87
USP48-215ENST00000534705 GRXCR2A6NFK2 248 aa9.62□□□□□ -0.87
USP48-215ENST00000534705 SLC4A3P48751 1232 aa9.62□□□□□ -0.87
USP48-215ENST00000534705 APLP1P51693 650 aa9.62□□□□□ -0.87
USP48-215ENST00000534705 ARIH1Q9Y4X5 557 aaPredicted RBP9.62□□□□□ -0.87
USP48-215ENST00000534705 E2F4Q16254 413 aa9.61□□□□□ -0.87
USP48-215ENST00000534705 SLF2Q8IX21 1173 aa9.61□□□□□ -0.87
USP48-215ENST00000534705 BBXQ8WY36 941 aaPredicted RBP9.6□□□□□ -0.87
USP48-215ENST00000534705 C3orf80F5H4A9 247 aa9.59□□□□□ -0.87
USP48-215ENST00000534705 NKX2-3Q8TAU0 364 aa9.58□□□□□ -0.88
USP48-215ENST00000534705 PRR14Q9BWN1 585 aa9.58□□□□□ -0.88
USP48-215ENST00000534705 PRIM1P49642 420 aaKnown RBP9.57□□□□□ -0.88
USP48-215ENST00000534705 OSBPP22059 807 aa9.56□□□□□ -0.88
USP48-215ENST00000534705 COPS2P61201 443 aa9.56□□□□□ -0.88
USP48-215ENST00000534705 WDR70Q9NW82 654 aa9.56□□□□□ -0.88
USP48-215ENST00000534705 SWT1Q5T5J6 900 aaKnown RBP9.55□□□□□ -0.88
USP48-215ENST00000534705 ZPR1O75312 459 aa9.54□□□□□ -0.88
USP48-215ENST00000534705 TTC13Q8NBP0 860 aa9.54□□□□□ -0.88
USP48-215ENST00000534705 CDHR5Q9HBB8 845 aa9.54□□□□□ -0.88
USP48-215ENST00000534705 SPRYD3Q8NCJ5 442 aa9.52□□□□□ -0.89
USP48-215ENST00000534705 ZNF775Q96BV0 537 aaPredicted RBP9.52□□□□□ -0.89
USP48-215ENST00000534705 SLC19A1P41440 591 aa9.51□□□□□ -0.89
USP48-215ENST00000534705 PADI6Q6TGC4 694 aa9.51□□□□□ -0.89
USP48-215ENST00000534705 PCDHB3Q9Y5E6 796 aa9.5□□□□□ -0.89
USP48-215ENST00000534705 DGAT1O75907 488 aa9.49□□□□□ -0.89
USP48-215ENST00000534705 PKDCCQ504Y2 493 aa9.49□□□□□ -0.89
USP48-215ENST00000534705 EYA1Q99502 592 aa9.48□□□□□ -0.89
USP48-215ENST00000534705 NPDC1Q9NQX5 325 aaPredicted RBP9.48□□□□□ -0.89
USP48-215ENST00000534705 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.48□□□□□ -0.89
USP48-215ENST00000534705 RNF223E7ERA6 249 aa9.46□□□□□ -0.9
USP48-215ENST00000534705 PRR20EP86478 221 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms