RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 PTPREP23469 700 aa6.34□□□□□ -1.39
CD44-234ENST00000531873 FOSBP53539 338 aa6.34□□□□□ -1.39
CD44-234ENST00000531873 Q6ZNB5 142 aa6.34□□□□□ -1.39
CD44-234ENST00000531873 ZNF454Q8N9F8 522 aa6.34□□□□□ -1.39
CD44-234ENST00000531873 ARHGEF1Q92888 912 aaKnown RBP6.34□□□□□ -1.39
CD44-234ENST00000531873 NBPF3Q9H094 633 aa6.33□□□□□ -1.4
CD44-234ENST00000531873 E2F4Q16254 413 aa6.32□□□□□ -1.4
CD44-234ENST00000531873 ANO8Q9HCE9 1232 aaPredicted RBP6.32□□□□□ -1.4
CD44-234ENST00000531873 MFSD10Q14728 455 aa6.31□□□□□ -1.4
CD44-234ENST00000531873 LAPTM4AQ15012 233 aa6.31□□□□□ -1.4
CD44-234ENST00000531873 CRISPLD2Q9H0B8 497 aa6.31□□□□□ -1.4
CD44-234ENST00000531873 TESPA1A2RU30 521 aaPredicted RBP6.3□□□□□ -1.4
CD44-234ENST00000531873 SEMA3EO15041 775 aa6.3□□□□□ -1.4
CD44-234ENST00000531873 JPH4Q96JJ6 628 aa6.29□□□□□ -1.4
CD44-234ENST00000531873 LCE2BO14633 110 aa6.28□□□□□ -1.4
CD44-234ENST00000531873 NYAP1Q6ZVC0 841 aa6.28□□□□□ -1.4
CD44-234ENST00000531873 LARP6Q9BRS8 491 aaKnown RBP6.28□□□□□ -1.4
CD44-234ENST00000531873 TIMELESSQ9UNS1 1208 aa6.28□□□□□ -1.4
CD44-234ENST00000531873 ZC3H15Q8WU90 426 aaKnown RBP6.27□□□□□ -1.41
CD44-234ENST00000531873 ZDHHC16Q969W1 377 aa6.27□□□□□ -1.41
CD44-234ENST00000531873 RABGEF1Q9UJ41 708 aa6.27□□□□□ -1.41
CD44-234ENST00000531873 PDE4AP27815 886 aa6.26□□□□□ -1.41
CD44-234ENST00000531873 CAMK2BQ13554 666 aa6.26□□□□□ -1.41
CD44-234ENST00000531873 TMEM132AQ24JP5 1023 aa6.26□□□□□ -1.41
CD44-234ENST00000531873 ANKK1Q8NFD2 765 aa6.26□□□□□ -1.41
CD44-234ENST00000531873 UPF1Q92900 1129 aaKnown RBP eCLIP6.26□□□□□ -1.41
CD44-234ENST00000531873 DDX27Q96GQ7 796 aaKnown RBP6.26□□□□□ -1.41
CD44-234ENST00000531873 ADAM33Q9BZ11 813 aa6.26□□□□□ -1.41
CD44-234ENST00000531873 ARIH1Q9Y4X5 557 aaPredicted RBP6.26□□□□□ -1.41
CD44-234ENST00000531873 BRPF1P55201 1214 aaPredicted RBP6.25□□□□□ -1.41
CD44-234ENST00000531873 TRAF7Q6Q0C0 670 aa6.25□□□□□ -1.41
CD44-234ENST00000531873 LAPTM4BQ86VI4 370 aa6.25□□□□□ -1.41
CD44-234ENST00000531873 GTF3C3Q9Y5Q9 886 aa6.25□□□□□ -1.41
CD44-234ENST00000531873 SOWAHBA6NEL2 793 aa6.24□□□□□ -1.41
CD44-234ENST00000531873 TULP1O00294 542 aaPredicted RBP6.24□□□□□ -1.41
CD44-234ENST00000531873 KCNC4Q03721 635 aa6.24□□□□□ -1.41
CD44-234ENST00000531873 PPP1R3GB7ZBB8 358 aa6.23□□□□□ -1.41
CD44-234ENST00000531873 EVI5O60447 810 aa6.22□□□□□ -1.41
CD44-234ENST00000531873 BCAMP50895 628 aa6.22□□□□□ -1.41
CD44-234ENST00000531873 PPP1R15BQ5SWA1 713 aa6.22□□□□□ -1.41
CD44-234ENST00000531873 SLC24A3Q9HC58 644 aa6.21□□□□□ -1.42
CD44-234ENST00000531873 ONECUT3O60422 494 aaPredicted RBP6.2□□□□□ -1.42
CD44-234ENST00000531873 GFRA3O60609 400 aa6.2□□□□□ -1.42
CD44-234ENST00000531873 ZMYND10O75800 440 aa6.2□□□□□ -1.42
CD44-234ENST00000531873 PROX2Q3B8N5 592 aa6.19□□□□□ -1.42
CD44-234ENST00000531873 ZFRQ96KR1 1074 aaKnown RBP6.19□□□□□ -1.42
CD44-234ENST00000531873 WBP1LQ9NX94 342 aa6.19□□□□□ -1.42
CD44-234ENST00000531873 NRG2O14511 850 aaPredicted RBP6.18□□□□□ -1.42
CD44-234ENST00000531873 COL9A1P20849 921 aa6.18□□□□□ -1.42
CD44-234ENST00000531873 MLLT3P42568 568 aaPredicted RBP6.18□□□□□ -1.42
CD44-234ENST00000531873 EMILIN3Q9NT22 766 aa6.18□□□□□ -1.42
CD44-234ENST00000531873 PCDHGA10Q9Y5H3 936 aa6.17□□□□□ -1.42
CD44-234ENST00000531873 RBM26Q5T8P6 1007 aaKnown RBP6.16□□□□□ -1.42
CD44-234ENST00000531873 SMYD5Q6GMV2 418 aa6.16□□□□□ -1.42
CD44-234ENST00000531873 FBXW7Q969H0 707 aa6.16□□□□□ -1.42
CD44-234ENST00000531873 KIAA1468Q9P260 1216 aa6.16□□□□□ -1.42
CD44-234ENST00000531873 NEUROD2Q15784 382 aa6.15□□□□□ -1.42
CD44-234ENST00000531873 BARGINQ6ZT62 677 aa6.15□□□□□ -1.42
CD44-234ENST00000531873 TSR3Q9UJK0 312 aaKnown RBP6.15□□□□□ -1.42
CD44-234ENST00000531873 DPYSL4O14531 572 aa6.14□□□□□ -1.43
CD44-234ENST00000531873 PDIA6Q15084 440 aa6.14□□□□□ -1.43
CD44-234ENST00000531873 MAP3K9P80192 1104 aa6.13□□□□□ -1.43
CD44-234ENST00000531873 FAM98CQ17RN3 349 aaKnown RBP6.13□□□□□ -1.43
CD44-234ENST00000531873 TYW1BQ6NUM6 668 aa6.13□□□□□ -1.43
CD44-234ENST00000531873 GPIHBP1Q8IV16 184 aa6.13□□□□□ -1.43
CD44-234ENST00000531873 V9GY48 417 aaPredicted RBP6.13□□□□□ -1.43
CD44-234ENST00000531873 PHF14O94880 888 aa6.12□□□□□ -1.43
CD44-234ENST00000531873 GPR37O15354 613 aa6.11□□□□□ -1.43
CD44-234ENST00000531873 ZNF787Q6DD87 383 aa6.11□□□□□ -1.43
CD44-234ENST00000531873 PRKD2Q9BZL6 878 aa6.11□□□□□ -1.43
CD44-234ENST00000531873 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.11□□□□□ -1.43
CD44-234ENST00000531873 HPS5Q9UPZ3 1129 aa6.11□□□□□ -1.43
CD44-234ENST00000531873 TRIM6-TRIM34B2RNG4 842 aa6.1□□□□□ -1.43
CD44-234ENST00000531873 TJAP1Q5JTD0 557 aa6.1□□□□□ -1.43
CD44-234ENST00000531873 ZNF775Q96BV0 537 aaPredicted RBP6.1□□□□□ -1.43
CD44-234ENST00000531873 LRCH3Q96II8 777 aa6.1□□□□□ -1.43
CD44-234ENST00000531873 SEPT9Q9UHD8 586 aaPredicted RBP6.1□□□□□ -1.43
CD44-234ENST00000531873 SPDYE16A6NNV3 312 aaPredicted RBP6.09□□□□□ -1.43
CD44-234ENST00000531873 C6orf132Q5T0Z8 1188 aa6.08□□□□□ -1.44
CD44-234ENST00000531873 ERICH6Q7L0X2 663 aa6.08□□□□□ -1.44
CD44-234ENST00000531873 EPAS1Q99814 870 aa6.08□□□□□ -1.44
CD44-234ENST00000531873 GPBP1L1Q9HC44 474 aaPredicted RBP6.08□□□□□ -1.44
CD44-234ENST00000531873 AK7Q96M32 723 aa6.07□□□□□ -1.44
CD44-234ENST00000531873 PPP1R18Q6NYC8 613 aa6.06□□□□□ -1.44
CD44-234ENST00000531873 C14orf37Q86TY3 774 aa6.06□□□□□ -1.44
CD44-234ENST00000531873 PPP4CP60510 307 aa6.05□□□□□ -1.44
CD44-234ENST00000531873 IL21Q9HBE4 155 aa6.05□□□□□ -1.44
CD44-234ENST00000531873 PDZRN3Q9UPQ7 1066 aa6.05□□□□□ -1.44
CD44-234ENST00000531873 TRIM66O15016 1216 aa6.04□□□□□ -1.44
CD44-234ENST00000531873 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.04□□□□□ -1.44
CD44-234ENST00000531873 PDE4DQ08499 809 aa6.03□□□□□ -1.44
CD44-234ENST00000531873 KRI1Q8N9T8 703 aaKnown RBP6.03□□□□□ -1.44
CD44-234ENST00000531873 MTRQ99707 1265 aa6.03□□□□□ -1.44
CD44-234ENST00000531873 KDM4CQ9H3R0 1056 aa6.03□□□□□ -1.44
CD44-234ENST00000531873 OSBPP22059 807 aa6.02□□□□□ -1.45
CD44-234ENST00000531873 PACS2Q86VP3 889 aa6.02□□□□□ -1.45
CD44-234ENST00000531873 GRXCR2A6NFK2 248 aa6.01□□□□□ -1.45
CD44-234ENST00000531873 TSKSQ9UJT2 592 aa6.01□□□□□ -1.45
CD44-234ENST00000531873 PRIM1P49642 420 aaKnown RBP6□□□□□ -1.45
CD44-234ENST00000531873 CCDC102AQ96A19 550 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 117.5 ms