RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 FGD5Q6ZNL6 1462 aa6.74□□□□□ -1.33
CD44-226ENST00000527889 LOC105371045A0A1W2PR82 267 aa6.74□□□□□ -1.33
CD44-226ENST00000527889 TTBK1Q5TCY1 1321 aaPredicted RBP6.74□□□□□ -1.33
CD44-226ENST00000527889 PBRM1Q86U86 1689 aa6.73□□□□□ -1.33
CD44-226ENST00000527889 PDS5BQ9NTI5 1447 aa6.73□□□□□ -1.33
CD44-226ENST00000527889 KIF3CO14782 793 aa6.72□□□□□ -1.33
CD44-226ENST00000527889 ZMYND10O75800 440 aa6.72□□□□□ -1.33
CD44-226ENST00000527889 C2orf72A6NCS6 295 aa6.71□□□□□ -1.34
CD44-226ENST00000527889 KIF21BO75037 1637 aa6.71□□□□□ -1.34
CD44-226ENST00000527889 NCKAP5LQ9HCH0 1330 aa6.71□□□□□ -1.34
CD44-226ENST00000527889 POLA1P09884 1462 aaPredicted RBP6.7□□□□□ -1.34
CD44-226ENST00000527889 SPATA31D1Q6ZQQ2 1576 aa6.69□□□□□ -1.34
CD44-226ENST00000527889 TARBP1Q13395 1621 aaKnown RBP6.69□□□□□ -1.34
CD44-226ENST00000527889 EEA1Q15075 1411 aa6.69□□□□□ -1.34
CD44-226ENST00000527889 SYNJ2O15056 1496 aa6.69□□□□□ -1.34
CD44-226ENST00000527889 MRC2Q9UBG0 1479 aa6.69□□□□□ -1.34
CD44-226ENST00000527889 RAD54L2Q9Y4B4 1467 aa6.69□□□□□ -1.34
CD44-226ENST00000527889 CRISPLD2Q9H0B8 497 aa6.69□□□□□ -1.34
CD44-226ENST00000527889 ABCA5Q8WWZ7 1642 aa6.68□□□□□ -1.34
CD44-226ENST00000527889 WDR62O43379 1518 aa6.68□□□□□ -1.34
CD44-226ENST00000527889 BARGINQ6ZT62 677 aa6.68□□□□□ -1.34
CD44-226ENST00000527889 HOXB3P14651 431 aaPredicted RBP6.67□□□□□ -1.34
CD44-226ENST00000527889 MFSD10Q14728 455 aa6.67□□□□□ -1.34
CD44-226ENST00000527889 SMYD5Q6GMV2 418 aa6.67□□□□□ -1.34
CD44-226ENST00000527889 GPHNQ9NQX3 736 aaPredicted RBP6.67□□□□□ -1.34
CD44-226ENST00000527889 ARIH1Q9Y4X5 557 aaPredicted RBP6.67□□□□□ -1.34
CD44-226ENST00000527889 CTTNBP2Q8WZ74 1663 aa6.67□□□□□ -1.34
CD44-226ENST00000527889 LCE2DQ5TA82 110 aaPredicted RBP6.66□□□□□ -1.34
CD44-226ENST00000527889 TMC2Q8TDI7 906 aa6.66□□□□□ -1.34
CD44-226ENST00000527889 ABCA10Q8WWZ4 1543 aa6.66□□□□□ -1.34
CD44-226ENST00000527889 CUL7Q14999 1698 aa6.65□□□□□ -1.34
CD44-226ENST00000527889 PDE4AP27815 886 aa6.65□□□□□ -1.34
CD44-226ENST00000527889 DSG2Q14126 1118 aa6.65□□□□□ -1.34
CD44-226ENST00000527889 LARP6Q9BRS8 491 aaKnown RBP6.65□□□□□ -1.34
CD44-226ENST00000527889 KIF27Q86VH2 1401 aa6.65□□□□□ -1.35
CD44-226ENST00000527889 GOLGA3Q08378 1498 aa6.64□□□□□ -1.35
CD44-226ENST00000527889 EIF4G3O43432 1585 aaKnown RBP6.63□□□□□ -1.35
CD44-226ENST00000527889 FOXK1P85037 733 aa6.63□□□□□ -1.35
CD44-226ENST00000527889 CAMK2BQ13554 666 aa6.63□□□□□ -1.35
CD44-226ENST00000527889 ERICH3Q5RHP9 1530 aa6.63□□□□□ -1.35
CD44-226ENST00000527889 RAPGEF2Q9Y4G8 1499 aa6.63□□□□□ -1.35
CD44-226ENST00000527889 PLPP6Q8IY26 295 aa6.62□□□□□ -1.35
CD44-226ENST00000527889 AK7Q96M32 723 aa6.62□□□□□ -1.35
CD44-226ENST00000527889 PPP1R15BQ5SWA1 713 aa6.61□□□□□ -1.35
CD44-226ENST00000527889 DDX27Q96GQ7 796 aaKnown RBP6.61□□□□□ -1.35
CD44-226ENST00000527889 GPBP1L1Q9HC44 474 aaPredicted RBP6.61□□□□□ -1.35
CD44-226ENST00000527889 PRXQ9BXM0 1461 aa6.6□□□□□ -1.35
CD44-226ENST00000527889 ST18O60284 1047 aa6.6□□□□□ -1.35
CD44-226ENST00000527889 FAM163AQ96GL9 167 aaPredicted RBP6.6□□□□□ -1.35
CD44-226ENST00000527889 GAPVD1Q14C86 1478 aa6.6□□□□□ -1.35
CD44-226ENST00000527889 RBM26Q5T8P6 1007 aaKnown RBP6.59□□□□□ -1.35
CD44-226ENST00000527889 ADAMTS12P58397 1594 aa6.59□□□□□ -1.35
CD44-226ENST00000527889 ZNF608Q9ULD9 1512 aaPredicted RBP6.59□□□□□ -1.35
CD44-226ENST00000527889 IFT140Q96RY7 1462 aa6.59□□□□□ -1.36
CD44-226ENST00000527889 CHD1O14646 1710 aa6.59□□□□□ -1.36
CD44-226ENST00000527889 TDRD9Q8NDG6 1382 aaKnown RBP6.58□□□□□ -1.36
CD44-226ENST00000527889 SNPHO15079 494 aa6.58□□□□□ -1.36
CD44-226ENST00000527889 UBTFP17480 764 aaKnown RBP6.58□□□□□ -1.36
CD44-226ENST00000527889 MLLT3P42568 568 aaPredicted RBP6.58□□□□□ -1.36
CD44-226ENST00000527889 CEP162Q5TB80 1403 aa6.58□□□□□ -1.36
CD44-226ENST00000527889 IGF1RP08069 1367 aa6.57□□□□□ -1.36
CD44-226ENST00000527889 TNIKQ9UKE5 1360 aa6.57□□□□□ -1.36
CD44-226ENST00000527889 DOK7Q18PE1 504 aa6.57□□□□□ -1.36
CD44-226ENST00000527889 GPIHBP1Q8IV16 184 aa6.57□□□□□ -1.36
CD44-226ENST00000527889 IL27Q8NEV9 243 aa6.57□□□□□ -1.36
CD44-226ENST00000527889 KHSRPQ92945 711 aaKnown RBP eCLIP6.57□□□□□ -1.36
CD44-226ENST00000527889 ZMYND15Q9H091 742 aa6.57□□□□□ -1.36
CD44-226ENST00000527889 KDM4CQ9H3R0 1056 aa6.57□□□□□ -1.36
CD44-226ENST00000527889 AQRO60306 1485 aaKnown RBP eCLIP6.57□□□□□ -1.36
CD44-226ENST00000527889 CARMIL1Q5VZK9 1371 aa6.57□□□□□ -1.36
CD44-226ENST00000527889 SLC34A2O95436 690 aa6.56□□□□□ -1.36
CD44-226ENST00000527889 GPR153Q6NV75 609 aa6.56□□□□□ -1.36
CD44-226ENST00000527889 KRI1Q8N9T8 703 aaKnown RBP6.56□□□□□ -1.36
CD44-226ENST00000527889 EMILIN3Q9NT22 766 aa6.56□□□□□ -1.36
CD44-226ENST00000527889 TRIM66O15016 1216 aa6.55□□□□□ -1.36
CD44-226ENST00000527889 ARSIQ5FYB1 569 aa6.55□□□□□ -1.36
CD44-226ENST00000527889 OXER1Q8TDS5 423 aa6.55□□□□□ -1.36
CD44-226ENST00000527889 MARVELD3Q96A59 401 aa6.55□□□□□ -1.36
CD44-226ENST00000527889 HOXB1P14653 301 aaPredicted RBP6.54□□□□□ -1.36
CD44-226ENST00000527889 PDE4DQ08499 809 aa6.54□□□□□ -1.36
CD44-226ENST00000527889 ZNF710Q8N1W2 664 aa6.54□□□□□ -1.36
CD44-226ENST00000527889 PTCD2Q8WV60 388 aaKnown RBP6.54□□□□□ -1.36
CD44-226ENST00000527889 UPF1Q92900 1129 aaKnown RBP eCLIP6.54□□□□□ -1.36
CD44-226ENST00000527889 PCDHGA4Q9Y5G9 962 aa6.54□□□□□ -1.36
CD44-226ENST00000527889 GRIN2BQ13224 1484 aa6.53□□□□□ -1.36
CD44-226ENST00000527889 RANGAP1P46060 587 aaPredicted RBP6.53□□□□□ -1.36
CD44-226ENST00000527889 RSPH6AQ9H0K4 717 aa6.53□□□□□ -1.36
CD44-226ENST00000527889 LRRIQ1Q96JM4 1722 aa6.53□□□□□ -1.36
CD44-226ENST00000527889 SNAPC4Q5SXM2 1469 aa6.53□□□□□ -1.36
CD44-226ENST00000527889 CLIP1P30622 1438 aa6.52□□□□□ -1.37
CD44-226ENST00000527889 ZSWIM6Q9HCJ5 1215 aa6.52□□□□□ -1.37
CD44-226ENST00000527889 POTEB3A0JP26 581 aa6.51□□□□□ -1.37
CD44-226ENST00000527889 RIMBP2O15034 1052 aa6.51□□□□□ -1.37
CD44-226ENST00000527889 POTEBQ6S5H4 581 aa6.51□□□□□ -1.37
CD44-226ENST00000527889 PODXL2Q9NZ53 605 aa6.51□□□□□ -1.37
CD44-226ENST00000527889 ADGRL1O94910 1474 aa6.51□□□□□ -1.37
CD44-226ENST00000527889 GPR37O15354 613 aa6.5□□□□□ -1.37
CD44-226ENST00000527889 NUDT7P0C024 238 aa6.5□□□□□ -1.37
CD44-226ENST00000527889 FHAD1B1AJZ9 1412 aa6.5□□□□□ -1.37
CD44-226ENST00000527889 IQGAP2Q13576 1575 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms