RNA–Protein interactions for RNA: ENST00000523655.1

SREK1-213, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, human

TSL 5

Gene SREK1, Length 606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREK1-213	ENST00000523655	KCNV2	Q8TDN2	545 aa		11.64	□□□□□ -0.55
SREK1-213	ENST00000523655	KCNH8	Q96L42	1107 aa		11.64	□□□□□ -0.55
SREK1-213	ENST00000523655	ZBED2	Q9BTP6	218 aa		11.64	□□□□□ -0.55
SREK1-213	ENST00000523655	PROX2	Q3B8N5	592 aa		11.63	□□□□□ -0.55
SREK1-213	ENST00000523655	HAP1	P54257	671 aa	Predicted RBP	11.62	□□□□□ -0.55
SREK1-213	ENST00000523655	ARIH1	Q9Y4X5	557 aa	Predicted RBP	11.62	□□□□□ -0.55
SREK1-213	ENST00000523655	SPDYE16	A6NNV3	312 aa	Predicted RBP	11.61	□□□□□ -0.55
SREK1-213	ENST00000523655	TSR1	Q2NL82	804 aa	Known RBP	11.61	□□□□□ -0.55
SREK1-213	ENST00000523655	C6orf132	Q5T0Z8	1188 aa		11.61	□□□□□ -0.55
SREK1-213	ENST00000523655	FBXW7	Q969H0	707 aa		11.6	□□□□□ -0.55
SREK1-213	ENST00000523655	EPAS1	Q99814	870 aa		11.6	□□□□□ -0.55
SREK1-213	ENST00000523655	PPP1R3G	B7ZBB8	358 aa		11.57	□□□□□ -0.56
SREK1-213	ENST00000523655	MAP3K7	O43318	606 aa		11.56	□□□□□ -0.56
SREK1-213	ENST00000523655	KCTD12	Q96CX2	325 aa	Known RBP	11.56	□□□□□ -0.56
SREK1-213	ENST00000523655	SLC4A5	Q9BY07	1137 aa		11.56	□□□□□ -0.56
SREK1-213	ENST00000523655	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.55	□□□□□ -0.56
SREK1-213	ENST00000523655	MLLT3	P42568	568 aa	Predicted RBP	11.55	□□□□□ -0.56
SREK1-213	ENST00000523655	EN1	Q05925	392 aa	Predicted RBP	11.55	□□□□□ -0.56
SREK1-213	ENST00000523655	STAC3	Q96MF2	364 aa		11.55	□□□□□ -0.56
SREK1-213	ENST00000523655	OSBP	P22059	807 aa		11.54	□□□□□ -0.56
SREK1-213	ENST00000523655	KDM2A	Q9Y2K7	1162 aa		11.54	□□□□□ -0.56
SREK1-213	ENST00000523655	CDHR5	Q9HBB8	845 aa		11.52	□□□□□ -0.57
SREK1-213	ENST00000523655	ARHGEF1	Q92888	912 aa	Known RBP	11.51	□□□□□ -0.57
SREK1-213	ENST00000523655	KIAA1468	Q9P260	1216 aa		11.51	□□□□□ -0.57
SREK1-213	ENST00000523655	MRPL50	Q8N5N7	158 aa	Known RBP	11.48	□□□□□ -0.57
SREK1-213	ENST00000523655	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.48	□□□□□ -0.57
SREK1-213	ENST00000523655	PTPN5	P54829	565 aa		11.47	□□□□□ -0.57
SREK1-213	ENST00000523655	TSKS	Q9UJT2	592 aa		11.47	□□□□□ -0.57
SREK1-213	ENST00000523655	SEMA3E	O15041	775 aa		11.46	□□□□□ -0.57
SREK1-213	ENST00000523655	FAM198A	Q9UFP1	575 aa		11.46	□□□□□ -0.57
SREK1-213	ENST00000523655	RABGEF1	Q9UJ41	708 aa		11.46	□□□□□ -0.57
SREK1-213	ENST00000523655	TRIM6-TRIM34	B2RNG4	842 aa		11.45	□□□□□ -0.58
SREK1-213	ENST00000523655	C3orf80	F5H4A9	247 aa		11.45	□□□□□ -0.58
SREK1-213	ENST00000523655	GOLGA8CP	A6NN73	597 aa		11.44	□□□□□ -0.58
SREK1-213	ENST00000523655	WNT2B	Q93097	391 aa		11.43	□□□□□ -0.58
SREK1-213	ENST00000523655	NBPF3	Q9H094	633 aa		11.43	□□□□□ -0.58
SREK1-213	ENST00000523655	SMAP	O00193	183 aa		11.42	□□□□□ -0.58
SREK1-213	ENST00000523655	HCST	Q9UBK5	93 aa		11.42	□□□□□ -0.58
SREK1-213	ENST00000523655	CDCA7L	Q96GN5	454 aa		11.41	□□□□□ -0.58
SREK1-213	ENST00000523655	THSD4	Q6ZMP0	1018 aa		11.4	□□□□□ -0.58
SREK1-213	ENST00000523655	P3H3	Q8IVL6	736 aa		11.4	□□□□□ -0.58
SREK1-213	ENST00000523655	NPDC1	Q9NQX5	325 aa	Predicted RBP	11.4	□□□□□ -0.58
SREK1-213	ENST00000523655	BCAM	P50895	628 aa		11.39	□□□□□ -0.59
SREK1-213	ENST00000523655	PRSS12	P56730	875 aa		11.39	□□□□□ -0.59
SREK1-213	ENST00000523655	ZFR	Q96KR1	1074 aa	Known RBP	11.37	□□□□□ -0.59
SREK1-213	ENST00000523655	ONECUT3	O60422	494 aa	Predicted RBP	11.36	□□□□□ -0.59
SREK1-213	ENST00000523655	PADI6	Q6TGC4	694 aa		11.34	□□□□□ -0.59
SREK1-213	ENST00000523655	PACS2	Q86VP3	889 aa		11.34	□□□□□ -0.59
SREK1-213	ENST00000523655	ANKK1	Q8NFD2	765 aa		11.33	□□□□□ -0.6
SREK1-213	ENST00000523655	NUTM2F	A1L443	756 aa		11.32	□□□□□ -0.6
SREK1-213	ENST00000523655	FAM98C	Q17RN3	349 aa	Known RBP	11.32	□□□□□ -0.6
SREK1-213	ENST00000523655	LAPTM4B	Q86VI4	370 aa		11.32	□□□□□ -0.6
SREK1-213	ENST00000523655	PNMA3	Q9UL41	463 aa		11.32	□□□□□ -0.6
SREK1-213	ENST00000523655	RBM26	Q5T8P6	1007 aa	Known RBP	11.31	□□□□□ -0.6
SREK1-213	ENST00000523655	NUDT18	Q6ZVK8	323 aa		11.31	□□□□□ -0.6
SREK1-213	ENST00000523655	CERK	Q8TCT0	537 aa		11.31	□□□□□ -0.6
SREK1-213	ENST00000523655	TATDN2	Q93075	761 aa		11.31	□□□□□ -0.6
SREK1-213	ENST00000523655	PLA2G2E	Q9NZK7	142 aa		11.31	□□□□□ -0.6
SREK1-213	ENST00000523655	TESPA1	A2RU30	521 aa	Predicted RBP	11.3	□□□□□ -0.6
SREK1-213	ENST00000523655	SOWAHB	A6NEL2	793 aa		11.29	□□□□□ -0.6
SREK1-213	ENST00000523655	VSIG10	Q8N0Z9	540 aa		11.29	□□□□□ -0.6
SREK1-213	ENST00000523655	PTGDR	Q13258	359 aa		11.28	□□□□□ -0.6
SREK1-213	ENST00000523655	FAM161A	Q3B820	660 aa		11.28	□□□□□ -0.6
SREK1-213	ENST00000523655	TTC13	Q8NBP0	860 aa		11.28	□□□□□ -0.6
SREK1-213	ENST00000523655	WBP1L	Q9NX94	342 aa		11.28	□□□□□ -0.6
SREK1-213	ENST00000523655	SAMD7	Q7Z3H4	446 aa		11.26	□□□□□ -0.61
SREK1-213	ENST00000523655	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.25	□□□□□ -0.61
SREK1-213	ENST00000523655	NBPF26	B4DH59	902 aa		11.24	□□□□□ -0.61
SREK1-213	ENST00000523655	HPS5	Q9UPZ3	1129 aa		11.24	□□□□□ -0.61
SREK1-213	ENST00000523655	LRCH3	Q96II8	777 aa		11.23	□□□□□ -0.61
SREK1-213	ENST00000523655	RBM27	Q9P2N5	1060 aa	Known RBP	11.22	□□□□□ -0.61
SREK1-213	ENST00000523655	FECH	P22830	423 aa		11.2	□□□□□ -0.62
SREK1-213	ENST00000523655	EYA1	Q99502	592 aa		11.19	□□□□□ -0.62
SREK1-213	ENST00000523655	RNF40	O75150	1001 aa		11.18	□□□□□ -0.62
SREK1-213	ENST00000523655	SWT1	Q5T5J6	900 aa	Known RBP	11.18	□□□□□ -0.62
SREK1-213	ENST00000523655	TSR3	Q9UJK0	312 aa	Known RBP	11.18	□□□□□ -0.62
SREK1-213	ENST00000523655	GPR37	O15354	613 aa		11.16	□□□□□ -0.62
SREK1-213	ENST00000523655	FCHSD2	O94868	740 aa		11.16	□□□□□ -0.62
SREK1-213	ENST00000523655	ADGRG1	Q9Y653	693 aa		11.16	□□□□□ -0.62
SREK1-213	ENST00000523655	PPP4C	P60510	307 aa		11.15	□□□□□ -0.62
SREK1-213	ENST00000523655	SMYD5	Q6GMV2	418 aa		11.14	□□□□□ -0.63
SREK1-213	ENST00000523655	NLRP7	Q8WX94	980 aa		11.1	□□□□□ -0.63
SREK1-213	ENST00000523655	RCCD1	A6NED2	376 aa		11.09	□□□□□ -0.63
SREK1-213	ENST00000523655	APLP1	P51693	650 aa		11.09	□□□□□ -0.63
SREK1-213	ENST00000523655	HIC1	Q14526	733 aa		11.09	□□□□□ -0.63
SREK1-213	ENST00000523655	HDGF	P51858	240 aa	Known RBP	11.08	□□□□□ -0.64
SREK1-213	ENST00000523655	RBM46	Q8TBY0	533 aa	Known RBP	11.08	□□□□□ -0.64
SREK1-213	ENST00000523655	GNPAT	O15228	680 aa		11.07	□□□□□ -0.64
SREK1-213	ENST00000523655	GPIHBP1	Q8IV16	184 aa		11.07	□□□□□ -0.64
SREK1-213	ENST00000523655	ITGBL1	O95965	494 aa	Predicted RBP	11.06	□□□□□ -0.64
SREK1-213	ENST00000523655	DNAJB2	P25686	324 aa		11.05	□□□□□ -0.64
SREK1-213	ENST00000523655	NYAP1	Q6ZVC0	841 aa		11.05	□□□□□ -0.64
SREK1-213	ENST00000523655	PXYLP1	Q8TE99	480 aa		11.05	□□□□□ -0.64
SREK1-213	ENST00000523655	TMEM134	Q9H6X4	195 aa		11.05	□□□□□ -0.64
SREK1-213	ENST00000523655	TJAP1	Q5JTD0	557 aa		11.03	□□□□□ -0.64
SREK1-213	ENST00000523655	METTL3	Q86U44	580 aa	Known RBP	11.03	□□□□□ -0.64
SREK1-213	ENST00000523655	SLF2	Q8IX21	1173 aa		11.03	□□□□□ -0.64
SREK1-213	ENST00000523655	ZNF516	Q92618	1163 aa		11.03	□□□□□ -0.64
SREK1-213	ENST00000523655	PHOX2B	Q99453	314 aa		11.03	□□□□□ -0.64
SREK1-213	ENST00000523655		A0A0G2JS52	829 aa		11.02	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms