RNA–Protein interactions for RNA: ENST00000520417.1

SKP1-207, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 3

Gene SKP1, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-207ENST00000520417 EPAS1Q99814 870 aa11.67□□□□□ -0.54
SKP1-207ENST00000520417 KCNV2Q8TDN2 545 aa11.66□□□□□ -0.54
SKP1-207ENST00000520417 TK2O00142 265 aa11.64□□□□□ -0.55
SKP1-207ENST00000520417 ARIH1Q9Y4X5 557 aaPredicted RBP11.64□□□□□ -0.55
SKP1-207ENST00000520417 MAP3K7O43318 606 aa11.63□□□□□ -0.55
SKP1-207ENST00000520417 ARHGEF1Q92888 912 aaKnown RBP11.62□□□□□ -0.55
SKP1-207ENST00000520417 VPS9D1Q9Y2B5 631 aa11.62□□□□□ -0.55
SKP1-207ENST00000520417 C6orf132Q5T0Z8 1188 aa11.61□□□□□ -0.55
SKP1-207ENST00000520417 P3H3Q8IVL6 736 aa11.61□□□□□ -0.55
SKP1-207ENST00000520417 PPP1R3GB7ZBB8 358 aa11.6□□□□□ -0.55
SKP1-207ENST00000520417 COL9A1P20849 921 aa11.6□□□□□ -0.55
SKP1-207ENST00000520417 ZBED2Q9BTP6 218 aa11.6□□□□□ -0.55
SKP1-207ENST00000520417 HRO43593 1189 aa11.58□□□□□ -0.56
SKP1-207ENST00000520417 EN1Q05925 392 aaPredicted RBP11.58□□□□□ -0.56
SKP1-207ENST00000520417 TSR1Q2NL82 804 aaKnown RBP11.58□□□□□ -0.56
SKP1-207ENST00000520417 PROX2Q3B8N5 592 aa11.57□□□□□ -0.56
SKP1-207ENST00000520417 GOLGA8CPA6NN73 597 aa11.55□□□□□ -0.56
SKP1-207ENST00000520417 SLC4A5Q9BY07 1137 aa11.55□□□□□ -0.56
SKP1-207ENST00000520417 MRPL50Q8N5N7 158 aaKnown RBP11.54□□□□□ -0.56
SKP1-207ENST00000520417 KCTD12Q96CX2 325 aaKnown RBP11.54□□□□□ -0.56
SKP1-207ENST00000520417 MLLT3P42568 568 aaPredicted RBP11.53□□□□□ -0.56
SKP1-207ENST00000520417 KDM2AQ9Y2K7 1162 aa11.53□□□□□ -0.56
SKP1-207ENST00000520417 OSBPP22059 807 aa11.52□□□□□ -0.57
SKP1-207ENST00000520417 PRIM1P49642 420 aaKnown RBP11.52□□□□□ -0.57
SKP1-207ENST00000520417 NBPF3Q9H094 633 aa11.52□□□□□ -0.57
SKP1-207ENST00000520417 KIAA1468Q9P260 1216 aa11.5□□□□□ -0.57
SKP1-207ENST00000520417 RABGEF1Q9UJ41 708 aa11.49□□□□□ -0.57
SKP1-207ENST00000520417 BHMG1C9JSJ3 638 aaPredicted RBP11.48□□□□□ -0.57
SKP1-207ENST00000520417 SEMA3EO15041 775 aa11.48□□□□□ -0.57
SKP1-207ENST00000520417 CDHR5Q9HBB8 845 aa11.48□□□□□ -0.57
SKP1-207ENST00000520417 VSIG10Q8N0Z9 540 aa11.47□□□□□ -0.57
SKP1-207ENST00000520417 TRIM6-TRIM34B2RNG4 842 aa11.46□□□□□ -0.57
SKP1-207ENST00000520417 WNT2BQ93097 391 aa11.46□□□□□ -0.57
SKP1-207ENST00000520417 PTPN5P54829 565 aa11.45□□□□□ -0.58
SKP1-207ENST00000520417 SEPT9Q9UHD8 586 aaPredicted RBP11.45□□□□□ -0.58
SKP1-207ENST00000520417 HCSTQ9UBK5 93 aa11.44□□□□□ -0.58
SKP1-207ENST00000520417 PACS2Q86VP3 889 aa11.43□□□□□ -0.58
SKP1-207ENST00000520417 CDCA7LQ96GN5 454 aa11.43□□□□□ -0.58
SKP1-207ENST00000520417 PRSS12P56730 875 aa11.42□□□□□ -0.58
SKP1-207ENST00000520417 CERKQ8TCT0 537 aa11.42□□□□□ -0.58
SKP1-207ENST00000520417 TSKSQ9UJT2 592 aa11.42□□□□□ -0.58
SKP1-207ENST00000520417 NUTM2FA1L443 756 aa11.41□□□□□ -0.58
SKP1-207ENST00000520417 ONECUT3O60422 494 aaPredicted RBP11.41□□□□□ -0.58
SKP1-207ENST00000520417 SMAPO00193 183 aa11.39□□□□□ -0.59
SKP1-207ENST00000520417 ANKK1Q8NFD2 765 aa11.39□□□□□ -0.59
SKP1-207ENST00000520417 THSD4Q6ZMP0 1018 aa11.37□□□□□ -0.59
SKP1-207ENST00000520417 LAPTM4BQ86VI4 370 aa11.37□□□□□ -0.59
SKP1-207ENST00000520417 ZFRQ96KR1 1074 aaKnown RBP11.37□□□□□ -0.59
SKP1-207ENST00000520417 SMYD5Q6GMV2 418 aa11.36□□□□□ -0.59
SKP1-207ENST00000520417 PNMA3Q9UL41 463 aa11.36□□□□□ -0.59
SKP1-207ENST00000520417 FAM98CQ17RN3 349 aaKnown RBP11.35□□□□□ -0.59
SKP1-207ENST00000520417 PADI6Q6TGC4 694 aa11.35□□□□□ -0.59
SKP1-207ENST00000520417 FAM198AQ9UFP1 575 aa11.35□□□□□ -0.59
SKP1-207ENST00000520417 NBPF26B4DH59 902 aa11.34□□□□□ -0.59
SKP1-207ENST00000520417 BCAMP50895 628 aa11.34□□□□□ -0.59
SKP1-207ENST00000520417 NPDC1Q9NQX5 325 aaPredicted RBP11.34□□□□□ -0.59
SKP1-207ENST00000520417 TESPA1A2RU30 521 aaPredicted RBP11.33□□□□□ -0.6
SKP1-207ENST00000520417 NUDT18Q6ZVK8 323 aa11.33□□□□□ -0.6
SKP1-207ENST00000520417 TATDN2Q93075 761 aa11.33□□□□□ -0.6
SKP1-207ENST00000520417 RBM26Q5T8P6 1007 aaKnown RBP11.32□□□□□ -0.6
SKP1-207ENST00000520417 C3orf80F5H4A9 247 aa11.3□□□□□ -0.6
SKP1-207ENST00000520417 PTGDRQ13258 359 aa11.3□□□□□ -0.6
SKP1-207ENST00000520417 LRCH3Q96II8 777 aa11.3□□□□□ -0.6
SKP1-207ENST00000520417 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.3□□□□□ -0.6
SKP1-207ENST00000520417 SOWAHBA6NEL2 793 aa11.29□□□□□ -0.6
SKP1-207ENST00000520417 RBM27Q9P2N5 1060 aaKnown RBP11.29□□□□□ -0.6
SKP1-207ENST00000520417 RNF40O75150 1001 aa11.28□□□□□ -0.6
SKP1-207ENST00000520417 PLA2G2EQ9NZK7 142 aa11.28□□□□□ -0.6
SKP1-207ENST00000520417 FCHSD2O94868 740 aa11.27□□□□□ -0.61
SKP1-207ENST00000520417 HDGFP51858 240 aaKnown RBP11.27□□□□□ -0.61
SKP1-207ENST00000520417 SAMD7Q7Z3H4 446 aa11.26□□□□□ -0.61
SKP1-207ENST00000520417 HPS5Q9UPZ3 1129 aa11.26□□□□□ -0.61
SKP1-207ENST00000520417 TULP1O00294 542 aaPredicted RBP11.24□□□□□ -0.61
SKP1-207ENST00000520417 WBP1LQ9NX94 342 aa11.24□□□□□ -0.61
SKP1-207ENST00000520417 FAM161AQ3B820 660 aa11.23□□□□□ -0.61
SKP1-207ENST00000520417 TTC13Q8NBP0 860 aa11.23□□□□□ -0.61
SKP1-207ENST00000520417 PPP4CP60510 307 aa11.22□□□□□ -0.61
SKP1-207ENST00000520417 TSR3Q9UJK0 312 aaKnown RBP11.22□□□□□ -0.61
SKP1-207ENST00000520417 GPIHBP1Q8IV16 184 aa11.2□□□□□ -0.62
SKP1-207ENST00000520417 RBM46Q8TBY0 533 aaKnown RBP11.19□□□□□ -0.62
SKP1-207ENST00000520417 HIC1Q14526 733 aa11.18□□□□□ -0.62
SKP1-207ENST00000520417 SWT1Q5T5J6 900 aaKnown RBP11.18□□□□□ -0.62
SKP1-207ENST00000520417 EYA1Q99502 592 aa11.17□□□□□ -0.62
SKP1-207ENST00000520417 SLC4A3P48751 1232 aa11.16□□□□□ -0.62
SKP1-207ENST00000520417 ADGRG1Q9Y653 693 aa11.16□□□□□ -0.62
SKP1-207ENST00000520417 GNPATO15228 680 aa11.15□□□□□ -0.62
SKP1-207ENST00000520417 FECHP22830 423 aa11.14□□□□□ -0.63
SKP1-207ENST00000520417 NYAP1Q6ZVC0 841 aa11.14□□□□□ -0.63
SKP1-207ENST00000520417 DNAJB2P25686 324 aa11.13□□□□□ -0.63
SKP1-207ENST00000520417 SLF2Q8IX21 1173 aa11.13□□□□□ -0.63
SKP1-207ENST00000520417 RCCD1A6NED2 376 aa11.12□□□□□ -0.63
SKP1-207ENST00000520417 OATP04181 439 aa11.1□□□□□ -0.63
SKP1-207ENST00000520417 GPR37O15354 613 aa11.09□□□□□ -0.63
SKP1-207ENST00000520417 PXYLP1Q8TE99 480 aa11.07□□□□□ -0.64
SKP1-207ENST00000520417 NECTIN2Q92692 538 aa11.07□□□□□ -0.64
SKP1-207ENST00000520417 TMEM134Q9H6X4 195 aa11.06□□□□□ -0.64
SKP1-207ENST00000520417 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.05□□□□□ -0.64
SKP1-207ENST00000520417 APLP1P51693 650 aa11.05□□□□□ -0.64
SKP1-207ENST00000520417 KCNC4Q03721 635 aa11.05□□□□□ -0.64
SKP1-207ENST00000520417 METTL3Q86U44 580 aaKnown RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms