RNA–Protein interactions for RNA: ENST00000512813.5

CLCN3-208, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-208ENST00000512813 FAM135AQ9P2D6 1515 aa16.15■□□□□ 0.18
CLCN3-208ENST00000512813 ZC3H13Q5T200 1668 aaKnown RBP16.15■□□□□ 0.18
CLCN3-208ENST00000512813 THEMISQ8N1K5 641 aaPredicted RBP16.15■□□□□ 0.18
CLCN3-208ENST00000512813 CDK12Q9NYV4 1490 aaPredicted RBP16.15■□□□□ 0.18
CLCN3-208ENST00000512813 INO80Q9ULG1 1556 aaPredicted RBP16.14■□□□□ 0.17
CLCN3-208ENST00000512813 RANGAP1P46060 587 aaPredicted RBP16.14■□□□□ 0.17
CLCN3-208ENST00000512813 NLRP1Q9C000 1473 aa16.14■□□□□ 0.17
CLCN3-208ENST00000512813 GGT6Q6P531 493 aa16.13■□□□□ 0.17
CLCN3-208ENST00000512813 PZPP20742 1482 aa16.13■□□□□ 0.17
CLCN3-208ENST00000512813 SPAG9O60271 1321 aaKnown RBP16.12■□□□□ 0.17
CLCN3-208ENST00000512813 KDM5DQ9BY66 1539 aa16.11■□□□□ 0.17
CLCN3-208ENST00000512813 ZNF772Q68DY9 489 aaPredicted RBP16.11■□□□□ 0.17
CLCN3-208ENST00000512813 JCADQ9P266 1359 aa16.11■□□□□ 0.17
CLCN3-208ENST00000512813 SYCP2Q9BX26 1530 aa16.09■□□□□ 0.17
CLCN3-208ENST00000512813 FBXO31Q5XUX0 539 aaPredicted RBP16.09■□□□□ 0.17
CLCN3-208ENST00000512813 LRRC9Q6ZRR7 1453 aa16.09■□□□□ 0.17
CLCN3-208ENST00000512813 LRP6O75581 1613 aa16.08■□□□□ 0.17
CLCN3-208ENST00000512813 ADGBQ8N7X0 1667 aa16.08■□□□□ 0.16
CLCN3-208ENST00000512813 PHLPP1O60346 1717 aa16.07■□□□□ 0.16
CLCN3-208ENST00000512813 CDC42BPAQ5VT25 1732 aa16.07■□□□□ 0.16
CLCN3-208ENST00000512813 MIA2Q96PC5 1412 aa16.06■□□□□ 0.16
CLCN3-208ENST00000512813 SETBP1Q9Y6X0 1596 aa16.04■□□□□ 0.16
CLCN3-208ENST00000512813 FMN1Q68DA7 1419 aa16.04■□□□□ 0.16
CLCN3-208ENST00000512813 RXRBP28702 533 aa16.04■□□□□ 0.16
CLCN3-208ENST00000512813 COL16A1Q07092 1604 aaPredicted RBP16.03■□□□□ 0.16
CLCN3-208ENST00000512813 MAP3K1Q13233 1512 aa16.02■□□□□ 0.15
CLCN3-208ENST00000512813 LRRIQ1Q96JM4 1722 aa16.02■□□□□ 0.15
CLCN3-208ENST00000512813 SPATA31A6Q5VVP1 1343 aa16.01■□□□□ 0.15
CLCN3-208ENST00000512813 ATP1B4Q9UN42 357 aaPredicted RBP16.01■□□□□ 0.15
CLCN3-208ENST00000512813 SCAF11Q99590 1463 aaKnown RBP16■□□□□ 0.15
CLCN3-208ENST00000512813 FOXD1Q16676 465 aa16■□□□□ 0.15
CLCN3-208ENST00000512813 ZRANB1Q9UGI0 708 aa16■□□□□ 0.15
CLCN3-208ENST00000512813 FGD6Q6ZV73 1430 aa16■□□□□ 0.15
CLCN3-208ENST00000512813 TMEM94Q12767 1356 aa16■□□□□ 0.15
CLCN3-208ENST00000512813 KIAA1107Q9UPP5 1409 aa15.99■□□□□ 0.15
CLCN3-208ENST00000512813 RGS12O14924 1447 aa15.98■□□□□ 0.15
CLCN3-208ENST00000512813 MEX3CQ5U5Q3 659 aaKnown RBP15.98■□□□□ 0.15
CLCN3-208ENST00000512813 CSRNP3Q8WYN3 585 aa15.98■□□□□ 0.15
CLCN3-208ENST00000512813 HNRNPMP52272 730 aaKnown RBP eCLIP15.96■□□□□ 0.15
CLCN3-208ENST00000512813 PLEKHH2Q8IVE3 1493 aa15.96■□□□□ 0.14
CLCN3-208ENST00000512813 SHPRHQ149N8 1683 aa15.95■□□□□ 0.14
CLCN3-208ENST00000512813 ZNF777Q9ULD5 760 aaPredicted RBP15.94■□□□□ 0.14
CLCN3-208ENST00000512813 UBR1Q8IWV7 1749 aa15.94■□□□□ 0.14
CLCN3-208ENST00000512813 TIAM1Q13009 1591 aa15.93■□□□□ 0.14
CLCN3-208ENST00000512813 ARHGAP23Q9P227 1491 aa15.92■□□□□ 0.14
CLCN3-208ENST00000512813 SLIT1O75093 1534 aa15.92■□□□□ 0.14
CLCN3-208ENST00000512813 DHX29Q7Z478 1369 aaKnown RBP15.91■□□□□ 0.14
CLCN3-208ENST00000512813 GPATCH8Q9UKJ3 1502 aaKnown RBP15.9■□□□□ 0.14
CLCN3-208ENST00000512813 RBM33Q96EV2 1170 aaKnown RBP15.9■□□□□ 0.14
CLCN3-208ENST00000512813 LRP5O75197 1615 aa15.9■□□□□ 0.14
CLCN3-208ENST00000512813 PRDM15P57071 1507 aaPredicted RBP15.89■□□□□ 0.13
CLCN3-208ENST00000512813 ATAD2Q6PL18 1390 aa15.89■□□□□ 0.13
CLCN3-208ENST00000512813 NCOA2Q15596 1464 aa15.89■□□□□ 0.13
CLCN3-208ENST00000512813 WASHC2CQ9Y4E1 1318 aa15.89■□□□□ 0.13
CLCN3-208ENST00000512813 SLAIN2Q9P270 581 aa15.88■□□□□ 0.13
CLCN3-208ENST00000512813 NKTRP30414 1462 aaKnown RBP15.88■□□□□ 0.13
CLCN3-208ENST00000512813 CCDC18Q5T9S5 1454 aa15.88■□□□□ 0.13
CLCN3-208ENST00000512813 ABCC3O15438 1527 aa15.88■□□□□ 0.13
CLCN3-208ENST00000512813 AHDC1Q5TGY3 1603 aaPredicted RBP15.87■□□□□ 0.13
CLCN3-208ENST00000512813 NUTM2BA6NNL0 878 aaPredicted RBP15.87■□□□□ 0.13
CLCN3-208ENST00000512813 NUTM2EB1AL46 878 aaPredicted RBP15.87■□□□□ 0.13
CLCN3-208ENST00000512813 LTKP29376 864 aa15.87■□□□□ 0.13
CLCN3-208ENST00000512813 NUTM2DQ5VT03 806 aaPredicted RBP15.87■□□□□ 0.13
CLCN3-208ENST00000512813 NUTM2AQ8IVF1 878 aaPredicted RBP15.87■□□□□ 0.13
CLCN3-208ENST00000512813 MSH6P52701 1360 aa15.87■□□□□ 0.13
CLCN3-208ENST00000512813 RTEL1-TNFRSF6BF6WH68 1400 aa15.86■□□□□ 0.13
CLCN3-208ENST00000512813 ERVK-7P63135 1459 aa15.86■□□□□ 0.13
CLCN3-208ENST00000512813 ARHGAP35Q9NRY4 1499 aa15.86■□□□□ 0.13
CLCN3-208ENST00000512813 KIF3BO15066 747 aa15.86■□□□□ 0.13
CLCN3-208ENST00000512813 NWD1Q149M9 1564 aa15.86■□□□□ 0.13
CLCN3-208ENST00000512813 AFF2P51816 1311 aa15.86■□□□□ 0.13
CLCN3-208ENST00000512813 RBM6P78332 1123 aaKnown RBP15.85■□□□□ 0.13
CLCN3-208ENST00000512813 EP400Q96L91 3159 aa15.84■□□□□ 0.13
CLCN3-208ENST00000512813 KCNA6P17658 529 aa15.84■□□□□ 0.13
CLCN3-208ENST00000512813 TXNDC2Q86VQ3 553 aa15.84■□□□□ 0.13
CLCN3-208ENST00000512813 PROSER2Q86WR7 435 aaPredicted RBP15.84■□□□□ 0.13
CLCN3-208ENST00000512813 DIP2AQ14689 1571 aa15.83■□□□□ 0.12
CLCN3-208ENST00000512813 KDM5AP29375 1690 aaKnown RBP15.83■□□□□ 0.12
CLCN3-208ENST00000512813 EEA1Q15075 1411 aa15.81■□□□□ 0.12
CLCN3-208ENST00000512813 CAMSAP2Q08AD1 1489 aa15.79■□□□□ 0.12
CLCN3-208ENST00000512813 MBD5Q9P267 1494 aa15.79■□□□□ 0.12
CLCN3-208ENST00000512813 IFFO2Q5TF58 517 aa15.79■□□□□ 0.12
CLCN3-208ENST00000512813 CFDP1Q9UEE9 299 aaPredicted RBP15.78■□□□□ 0.12
CLCN3-208ENST00000512813 EID1Q9Y6B2 187 aa15.78■□□□□ 0.12
CLCN3-208ENST00000512813 QTRT2Q9H974 415 aaKnown RBP15.77■□□□□ 0.12
CLCN3-208ENST00000512813 TET3O43151 1660 aa15.76■□□□□ 0.11
CLCN3-208ENST00000512813 CASKIN1Q8WXD9 1431 aa15.76■□□□□ 0.11
CLCN3-208ENST00000512813 CCDC125Q86Z20 511 aa15.75■□□□□ 0.11
CLCN3-208ENST00000512813 NGLY1Q96IV0 654 aa15.74■□□□□ 0.11
CLCN3-208ENST00000512813 TMEM2Q9UHN6 1383 aa15.74■□□□□ 0.11
CLCN3-208ENST00000512813 NHSL1Q5SYE7 1610 aa15.73■□□□□ 0.11
CLCN3-208ENST00000512813 CCNB3Q8WWL7 1395 aa15.72■□□□□ 0.11
CLCN3-208ENST00000512813 PIK3C2BO00750 1634 aa15.7■□□□□ 0.1
CLCN3-208ENST00000512813 MAST1Q9Y2H9 1570 aa15.7■□□□□ 0.1
CLCN3-208ENST00000512813 C8orf37Q96NL8 207 aa15.69■□□□□ 0.1
CLCN3-208ENST00000512813 SETD5Q9C0A6 1442 aa15.68■□□□□ 0.1
CLCN3-208ENST00000512813 NCOA3Q9Y6Q9 1424 aa15.68■□□□□ 0.1
CLCN3-208ENST00000512813 SLC26A8Q96RN1 970 aa15.68■□□□□ 0.1
CLCN3-208ENST00000512813 ZNF644Q9H582 1327 aaPredicted RBP15.68■□□□□ 0.1
CLCN3-208ENST00000512813 CCDC141Q6ZP82 1450 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms