RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 MIA2Q96PC5 1412 aa17.67■□□□□ 0.42
GPC1-209ENST00000495100 NUP153P49790 1475 aaKnown RBP17.66■□□□□ 0.42
GPC1-209ENST00000495100 C9orf84Q5VXU9 1444 aa17.66■□□□□ 0.42
GPC1-209ENST00000495100 TMEM132EQ6IEE7 984 aa17.65■□□□□ 0.42
GPC1-209ENST00000495100 RPRD2Q5VT52 1461 aaKnown RBP17.65■□□□□ 0.42
GPC1-209ENST00000495100 CAMSAP2Q08AD1 1489 aa17.65■□□□□ 0.42
GPC1-209ENST00000495100 HECW1Q76N89 1606 aa17.65■□□□□ 0.42
GPC1-209ENST00000495100 MRC2Q9UBG0 1479 aa17.64■□□□□ 0.41
GPC1-209ENST00000495100 PDE4AP27815 886 aa17.64■□□□□ 0.41
GPC1-209ENST00000495100 CTTNBP2Q8WZ74 1663 aa17.64■□□□□ 0.41
GPC1-209ENST00000495100 CFAP70Q5T0N1 1121 aa17.64■□□□□ 0.41
GPC1-209ENST00000495100 KIF21AQ7Z4S6 1674 aa17.63■□□□□ 0.41
GPC1-209ENST00000495100 U2SURPO15042 1029 aaKnown RBP17.63■□□□□ 0.41
GPC1-209ENST00000495100 IPO9Q96P70 1041 aaKnown RBP17.62■□□□□ 0.41
GPC1-209ENST00000495100 FANCIQ9NVI1 1328 aa17.62■□□□□ 0.41
GPC1-209ENST00000495100 EFCAB2Q5VUJ9 269 aa17.62■□□□□ 0.41
GPC1-209ENST00000495100 DENND4BO75064 1496 aaPredicted RBP17.62■□□□□ 0.41
GPC1-209ENST00000495100 SPAG9O60271 1321 aaKnown RBP17.62■□□□□ 0.41
GPC1-209ENST00000495100 SLC24A1O60721 1099 aa17.61■□□□□ 0.41
GPC1-209ENST00000495100 STAG3Q9UJ98 1225 aa17.61■□□□□ 0.41
GPC1-209ENST00000495100 MLECQ14165 292 aa17.6■□□□□ 0.41
GPC1-209ENST00000495100 KIAA0586Q9BVV6 1533 aa17.6■□□□□ 0.41
GPC1-209ENST00000495100 GPATCH8Q9UKJ3 1502 aaKnown RBP17.59■□□□□ 0.41
GPC1-209ENST00000495100 NPM1P06748 294 aaKnown RBP eCLIP17.59■□□□□ 0.41
GPC1-209ENST00000495100 SOX12O15370 315 aa17.58■□□□□ 0.4
GPC1-209ENST00000495100 GRIN2AQ12879 1464 aa17.57■□□□□ 0.4
GPC1-209ENST00000495100 BCAR3O75815 825 aa17.56■□□□□ 0.4
GPC1-209ENST00000495100 COG6Q9Y2V7 657 aa17.55■□□□□ 0.4
GPC1-209ENST00000495100 ERICH6BQ5W0A0 696 aa17.55■□□□□ 0.4
GPC1-209ENST00000495100 MORC1Q86VD1 984 aa17.55■□□□□ 0.4
GPC1-209ENST00000495100 DISP3Q9P2K9 1392 aa17.54■□□□□ 0.4
GPC1-209ENST00000495100 GOLGA2Q08379 1002 aa17.54■□□□□ 0.4
GPC1-209ENST00000495100 SLKQ9H2G2 1235 aaPredicted RBP17.54■□□□□ 0.4
GPC1-209ENST00000495100 DHX29Q7Z478 1369 aaKnown RBP17.54■□□□□ 0.4
GPC1-209ENST00000495100 ROCK1Q13464 1354 aa17.52■□□□□ 0.4
GPC1-209ENST00000495100 TCERG1O14776 1098 aaKnown RBP17.52■□□□□ 0.39
GPC1-209ENST00000495100 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.52■□□□□ 0.39
GPC1-209ENST00000495100 PANK1Q8TE04 598 aa17.52■□□□□ 0.39
GPC1-209ENST00000495100 PZPP20742 1482 aa17.52■□□□□ 0.39
GPC1-209ENST00000495100 IFT140Q96RY7 1462 aa17.52■□□□□ 0.39
GPC1-209ENST00000495100 DISP1Q96F81 1524 aa17.51■□□□□ 0.39
GPC1-209ENST00000495100 U2AF1L5P0DN76 240 aaPredicted RBP17.51■□□□□ 0.39
GPC1-209ENST00000495100 U2AF1Q01081 240 aaKnown RBP eCLIP17.51■□□□□ 0.39
GPC1-209ENST00000495100 PPP2R1AP30153 589 aa17.51■□□□□ 0.39
GPC1-209ENST00000495100 NUTM2FA1L443 756 aa17.5■□□□□ 0.39
GPC1-209ENST00000495100 SRPK2P78362 688 aaKnown RBP17.5■□□□□ 0.39
GPC1-209ENST00000495100 SLC12A5Q9H2X9 1139 aa17.5■□□□□ 0.39
GPC1-209ENST00000495100 WDR62O43379 1518 aa17.49■□□□□ 0.39
GPC1-209ENST00000495100 ARHGAP5Q13017 1502 aa17.49■□□□□ 0.39
GPC1-209ENST00000495100 EIF5BO60841 1220 aaKnown RBP17.48■□□□□ 0.39
GPC1-209ENST00000495100 TEX14Q8IWB6 1497 aa17.48■□□□□ 0.39
GPC1-209ENST00000495100 PLEKHH2Q8IVE3 1493 aa17.48■□□□□ 0.39
GPC1-209ENST00000495100 ABCA5Q8WWZ7 1642 aa17.48■□□□□ 0.39
GPC1-209ENST00000495100 SAMD9Q5K651 1589 aa17.47■□□□□ 0.39
GPC1-209ENST00000495100 LRRIQ1Q96JM4 1722 aa17.47■□□□□ 0.39
GPC1-209ENST00000495100 SMG6Q86US8 1419 aaKnown RBP17.47■□□□□ 0.39
GPC1-209ENST00000495100 ELL2O00472 640 aaPredicted RBP17.47■□□□□ 0.39
GPC1-209ENST00000495100 MAGI1Q96QZ7 1491 aaPredicted RBP17.47■□□□□ 0.39
GPC1-209ENST00000495100 ATP10BO94823 1461 aa17.47■□□□□ 0.39
GPC1-209ENST00000495100 KIF14Q15058 1648 aa17.46■□□□□ 0.39
GPC1-209ENST00000495100 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.45■□□□□ 0.38
GPC1-209ENST00000495100 TCOF1Q13428 1488 aaKnown RBP17.45■□□□□ 0.38
GPC1-209ENST00000495100 KDM5BQ9UGL1 1544 aa17.44■□□□□ 0.38
GPC1-209ENST00000495100 CDCA8Q53HL2 280 aa17.44■□□□□ 0.38
GPC1-209ENST00000495100 BRD4O60885 1362 aaPredicted RBP17.44■□□□□ 0.38
GPC1-209ENST00000495100 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.43■□□□□ 0.38
GPC1-209ENST00000495100 FBLN1P23142 703 aa17.43■□□□□ 0.38
GPC1-209ENST00000495100 SPINK5Q9NQ38 1064 aaPredicted RBP17.43■□□□□ 0.38
GPC1-209ENST00000495100 IL27Q8NEV9 243 aa17.42■□□□□ 0.38
GPC1-209ENST00000495100 CABP2Q9NPB3 220 aa17.42■□□□□ 0.38
GPC1-209ENST00000495100 POGKQ9P215 609 aa17.42■□□□□ 0.38
GPC1-209ENST00000495100 SPATA31E1Q6ZUB1 1445 aa17.42■□□□□ 0.38
GPC1-209ENST00000495100 FTSJ3Q8IY81 847 aaKnown RBP17.42■□□□□ 0.38
GPC1-209ENST00000495100 TESK2Q96S53 571 aa17.41■□□□□ 0.38
GPC1-209ENST00000495100 WASHC2CQ9Y4E1 1318 aa17.4■□□□□ 0.38
GPC1-209ENST00000495100 ADAMTS12P58397 1594 aa17.4■□□□□ 0.38
GPC1-209ENST00000495100 MINK1Q8N4C8 1332 aaPredicted RBP17.4■□□□□ 0.38
GPC1-209ENST00000495100 GGNBP2Q9H3C7 697 aa17.4■□□□□ 0.38
GPC1-209ENST00000495100 RAPGEF6Q8TEU7 1601 aa17.4■□□□□ 0.38
GPC1-209ENST00000495100 PER1O15534 1290 aaPredicted RBP17.39■□□□□ 0.38
GPC1-209ENST00000495100 DMRT2Q9Y5R5 561 aa17.39■□□□□ 0.38
GPC1-209ENST00000495100 SYNJ2O15056 1496 aa17.39■□□□□ 0.37
GPC1-209ENST00000495100 ADGRF5Q8IZF2 1346 aa17.39■□□□□ 0.37
GPC1-209ENST00000495100 SCAPERQ9BY12 1400 aa17.39■□□□□ 0.37
GPC1-209ENST00000495100 APBB1O00213 710 aa17.39■□□□□ 0.37
GPC1-209ENST00000495100 TNNQ9UQP3 1299 aa17.39■□□□□ 0.37
GPC1-209ENST00000495100 RSPH4AQ5TD94 716 aa17.39■□□□□ 0.37
GPC1-209ENST00000495100 RAPGEF3O95398 923 aa17.38■□□□□ 0.37
GPC1-209ENST00000495100 GZF1Q9H116 711 aaPredicted RBP17.38■□□□□ 0.37
GPC1-209ENST00000495100 KIAA0556O60303 1618 aa17.38■□□□□ 0.37
GPC1-209ENST00000495100 TARBP1Q13395 1621 aaKnown RBP17.38■□□□□ 0.37
GPC1-209ENST00000495100 PDE3BQ13370 1112 aa17.38■□□□□ 0.37
GPC1-209ENST00000495100 TSR2Q969E8 191 aaKnown RBP17.37■□□□□ 0.37
GPC1-209ENST00000495100 ERBINQ96RT1 1412 aa17.37■□□□□ 0.37
GPC1-209ENST00000495100 BACH2Q9BYV9 841 aa17.37■□□□□ 0.37
GPC1-209ENST00000495100 MTHFSP49914 203 aa17.36■□□□□ 0.37
GPC1-209ENST00000495100 TPRNQ4KMQ1 711 aa17.35■□□□□ 0.37
GPC1-209ENST00000495100 KANK1Q14678 1352 aa17.35■□□□□ 0.37
GPC1-209ENST00000495100 CENPJQ9HC77 1338 aaPredicted RBP17.34■□□□□ 0.37
GPC1-209ENST00000495100 FOXD4L1Q9NU39 408 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms