RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 COL9A1P20849 921 aa12.71□□□□□ -0.37
VPS50-219ENST00000495039 PROX2Q3B8N5 592 aa12.7□□□□□ -0.38
VPS50-219ENST00000495039 EPAS1Q99814 870 aa12.7□□□□□ -0.38
VPS50-219ENST00000495039 IFFO2Q5TF58 517 aa12.68□□□□□ -0.38
VPS50-219ENST00000495039 ANKK1Q8NFD2 765 aa12.67□□□□□ -0.38
VPS50-219ENST00000495039 C6orf132Q5T0Z8 1188 aa12.65□□□□□ -0.38
VPS50-219ENST00000495039 LAPTM4BQ86VI4 370 aa12.65□□□□□ -0.38
VPS50-219ENST00000495039 ONECUT3O60422 494 aaPredicted RBP12.64□□□□□ -0.39
VPS50-219ENST00000495039 KIAA1468Q9P260 1216 aa12.62□□□□□ -0.39
VPS50-219ENST00000495039 SPRYD3Q8NCJ5 442 aa12.61□□□□□ -0.39
VPS50-219ENST00000495039 RGS20O76081 388 aa12.6□□□□□ -0.39
VPS50-219ENST00000495039 DDX12PQ92771 950 aa12.6□□□□□ -0.39
VPS50-219ENST00000495039 RBM33Q96EV2 1170 aaKnown RBP12.6□□□□□ -0.39
VPS50-219ENST00000495039 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.6□□□□□ -0.39
VPS50-219ENST00000495039 A0A0G2JS52 829 aa12.58□□□□□ -0.4
VPS50-219ENST00000495039 TRIM6-TRIM34B2RNG4 842 aa12.58□□□□□ -0.4
VPS50-219ENST00000495039 ZFRQ96KR1 1074 aaKnown RBP12.58□□□□□ -0.4
VPS50-219ENST00000495039 SOWAHBA6NEL2 793 aa12.57□□□□□ -0.4
VPS50-219ENST00000495039 BCAMP50895 628 aa12.57□□□□□ -0.4
VPS50-219ENST00000495039 PDIA6Q15084 440 aa12.57□□□□□ -0.4
VPS50-219ENST00000495039 NBR1Q14596 966 aa12.56□□□□□ -0.4
VPS50-219ENST00000495039 SPDYE16A6NNV3 312 aaPredicted RBP12.55□□□□□ -0.4
VPS50-219ENST00000495039 EN1Q05925 392 aaPredicted RBP12.55□□□□□ -0.4
VPS50-219ENST00000495039 NYAP1Q6ZVC0 841 aa12.55□□□□□ -0.4
VPS50-219ENST00000495039 SEPT9Q9UHD8 586 aaPredicted RBP12.55□□□□□ -0.4
VPS50-219ENST00000495039 AMER1Q5JTC6 1135 aaPredicted RBP12.54□□□□□ -0.4
VPS50-219ENST00000495039 MAP3K7O43318 606 aa12.53□□□□□ -0.4
VPS50-219ENST00000495039 FAM98CQ17RN3 349 aaKnown RBP12.53□□□□□ -0.4
VPS50-219ENST00000495039 ITGBL1O95965 494 aaPredicted RBP12.52□□□□□ -0.41
VPS50-219ENST00000495039 E2F4Q16254 413 aa12.51□□□□□ -0.41
VPS50-219ENST00000495039 TSR1Q2NL82 804 aaKnown RBP12.49□□□□□ -0.41
VPS50-219ENST00000495039 WBP1LQ9NX94 342 aa12.49□□□□□ -0.41
VPS50-219ENST00000495039 PACS2Q86VP3 889 aa12.48□□□□□ -0.41
VPS50-219ENST00000495039 LRCH3Q96II8 777 aa12.48□□□□□ -0.41
VPS50-219ENST00000495039 WDR70Q9NW82 654 aa12.48□□□□□ -0.41
VPS50-219ENST00000495039 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.47□□□□□ -0.41
VPS50-219ENST00000495039 CFAP44Q96MT7 982 aa12.46□□□□□ -0.41
VPS50-219ENST00000495039 TSKSQ9UJT2 592 aa12.46□□□□□ -0.41
VPS50-219ENST00000495039 ARIH1Q9Y4X5 557 aaPredicted RBP12.46□□□□□ -0.41
VPS50-219ENST00000495039 PAXIP1Q6ZW49 1069 aaPredicted RBP12.45□□□□□ -0.42
VPS50-219ENST00000495039 TSR3Q9UJK0 312 aaKnown RBP12.45□□□□□ -0.42
VPS50-219ENST00000495039 HPS5Q9UPZ3 1129 aa12.44□□□□□ -0.42
VPS50-219ENST00000495039 CERKQ8TCT0 537 aa12.43□□□□□ -0.42
VPS50-219ENST00000495039 IRX2Q9BZI1 471 aaPredicted RBP12.43□□□□□ -0.42
VPS50-219ENST00000495039 GRXCR2A6NFK2 248 aa12.41□□□□□ -0.42
VPS50-219ENST00000495039 KCNC4Q03721 635 aa12.41□□□□□ -0.42
VPS50-219ENST00000495039 CDCA7LQ96GN5 454 aa12.41□□□□□ -0.42
VPS50-219ENST00000495039 PRSS12P56730 875 aa12.4□□□□□ -0.42
VPS50-219ENST00000495039 RTN4Q9NQC3 1192 aaKnown RBP12.4□□□□□ -0.42
VPS50-219ENST00000495039 PRIM1P49642 420 aaKnown RBP12.37□□□□□ -0.43
VPS50-219ENST00000495039 NBPF26B4DH59 902 aa12.36□□□□□ -0.43
VPS50-219ENST00000495039 SMAPO00193 183 aa12.35□□□□□ -0.43
VPS50-219ENST00000495039 PPP4CP60510 307 aa12.35□□□□□ -0.43
VPS50-219ENST00000495039 FAM198AQ9UFP1 575 aa12.34□□□□□ -0.43
VPS50-219ENST00000495039 OSBPP22059 807 aa12.33□□□□□ -0.44
VPS50-219ENST00000495039 SAMD7Q7Z3H4 446 aa12.33□□□□□ -0.44
VPS50-219ENST00000495039 TATDN2Q93075 761 aa12.33□□□□□ -0.44
VPS50-219ENST00000495039 RBM27Q9P2N5 1060 aaKnown RBP12.32□□□□□ -0.44
VPS50-219ENST00000495039 PNMA3Q9UL41 463 aa12.32□□□□□ -0.44
VPS50-219ENST00000495039 CDHR5Q9HBB8 845 aa12.31□□□□□ -0.44
VPS50-219ENST00000495039 NUDT18Q6ZVK8 323 aa12.27□□□□□ -0.45
VPS50-219ENST00000495039 C3orf80F5H4A9 247 aa12.26□□□□□ -0.45
VPS50-219ENST00000495039 HDGFP51858 240 aaKnown RBP12.26□□□□□ -0.45
VPS50-219ENST00000495039 RNF40O75150 1001 aa12.23□□□□□ -0.45
VPS50-219ENST00000495039 TJAP1Q5JTD0 557 aa12.23□□□□□ -0.45
VPS50-219ENST00000495039 IL21Q9HBE4 155 aa12.22□□□□□ -0.45
VPS50-219ENST00000495039 PADI6Q6TGC4 694 aa12.21□□□□□ -0.45
VPS50-219ENST00000495039 TTC13Q8NBP0 860 aa12.21□□□□□ -0.45
VPS50-219ENST00000495039 NECTIN2Q92692 538 aa12.21□□□□□ -0.45
VPS50-219ENST00000495039 MTRQ99707 1265 aa12.21□□□□□ -0.45
VPS50-219ENST00000495039 NPDC1Q9NQX5 325 aaPredicted RBP12.19□□□□□ -0.46
VPS50-219ENST00000495039 ARHGEF1Q92888 912 aaKnown RBP12.18□□□□□ -0.46
VPS50-219ENST00000495039 Q6ZNB5 142 aa12.17□□□□□ -0.46
VPS50-219ENST00000495039 APLP1P51693 650 aa12.16□□□□□ -0.46
VPS50-219ENST00000495039 SLF2Q8IX21 1173 aa12.16□□□□□ -0.46
VPS50-219ENST00000495039 SLC4A3P48751 1232 aa12.15□□□□□ -0.46
VPS50-219ENST00000495039 SWT1Q5T5J6 900 aaKnown RBP12.15□□□□□ -0.46
VPS50-219ENST00000495039 LAPTM4AQ15012 233 aa12.14□□□□□ -0.47
VPS50-219ENST00000495039 MLLT3P42568 568 aaPredicted RBP12.12□□□□□ -0.47
VPS50-219ENST00000495039 PPP1R18Q6NYC8 613 aa12.12□□□□□ -0.47
VPS50-219ENST00000495039 TSHZ2Q9NRE2 1034 aa12.12□□□□□ -0.47
VPS50-219ENST00000495039 KCNV2Q8TDN2 545 aa12.11□□□□□ -0.47
VPS50-219ENST00000495039 ZNF516Q92618 1163 aa12.11□□□□□ -0.47
VPS50-219ENST00000495039 EYA1Q99502 592 aa12.11□□□□□ -0.47
VPS50-219ENST00000495039 PRKD2Q9BZL6 878 aa12.1□□□□□ -0.47
VPS50-219ENST00000495039 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.08□□□□□ -0.48
VPS50-219ENST00000495039 PRR14Q9BWN1 585 aa12.07□□□□□ -0.48
VPS50-219ENST00000495039 V9GY48 417 aaPredicted RBP12.07□□□□□ -0.48
VPS50-219ENST00000495039 GFRA3O60609 400 aa12.06□□□□□ -0.48
VPS50-219ENST00000495039 COPS2P61201 443 aa12.06□□□□□ -0.48
VPS50-219ENST00000495039 PTGDRQ13258 359 aa12.06□□□□□ -0.48
VPS50-219ENST00000495039 GGCXP38435 758 aa12.05□□□□□ -0.48
VPS50-219ENST00000495039 DNAJB2P25686 324 aa12.03□□□□□ -0.48
VPS50-219ENST00000495039 NKX2-3Q8TAU0 364 aa12.03□□□□□ -0.48
VPS50-219ENST00000495039 RBM46Q8TBY0 533 aaKnown RBP12.03□□□□□ -0.48
VPS50-219ENST00000495039 P3H3Q8IVL6 736 aa12.02□□□□□ -0.49
VPS50-219ENST00000495039 PCDHB3Q9Y5E6 796 aa12.01□□□□□ -0.49
VPS50-219ENST00000495039 ZPR1O75312 459 aa12□□□□□ -0.49
VPS50-219ENST00000495039 NUTM2FA1L443 756 aa11.99□□□□□ -0.49
VPS50-219ENST00000495039 NRG2O14511 850 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms