RNA–Protein interactions for RNA: ENST00000494016.1

CPSF7-213, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 2

Gene CPSF7, Length 656 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-213ENST00000494016 MRC2Q9UBG0 1479 aa9.65□□□□□ -0.87
CPSF7-213ENST00000494016 PRDM2Q13029 1718 aa9.65□□□□□ -0.87
CPSF7-213ENST00000494016 ARHGEF1Q92888 912 aaKnown RBP9.64□□□□□ -0.87
CPSF7-213ENST00000494016 PCDHGA4Q9Y5G9 962 aa9.64□□□□□ -0.87
CPSF7-213ENST00000494016 TBC1D12O60347 775 aa9.63□□□□□ -0.87
CPSF7-213ENST00000494016 GPR153Q6NV75 609 aa9.63□□□□□ -0.87
CPSF7-213ENST00000494016 CFTRP13569 1480 aa9.62□□□□□ -0.87
CPSF7-213ENST00000494016 CEP164Q9UPV0 1460 aa9.62□□□□□ -0.87
CPSF7-213ENST00000494016 DPYSL4O14531 572 aa9.62□□□□□ -0.87
CPSF7-213ENST00000494016 MAP3K9P80192 1104 aa9.62□□□□□ -0.87
CPSF7-213ENST00000494016 VARS2Q5ST30 1063 aaKnown RBP9.62□□□□□ -0.87
CPSF7-213ENST00000494016 FANCD2Q9BXW9 1451 aa9.61□□□□□ -0.87
CPSF7-213ENST00000494016 ARSIQ5FYB1 569 aa9.61□□□□□ -0.87
CPSF7-213ENST00000494016 KDM4FA0A1W2PPD8 638 aa9.59□□□□□ -0.87
CPSF7-213ENST00000494016 KHSRPQ92945 711 aaKnown RBP eCLIP9.58□□□□□ -0.88
CPSF7-213ENST00000494016 SOGA1O94964 1423 aa9.57□□□□□ -0.88
CPSF7-213ENST00000494016 WRNQ14191 1432 aaPredicted RBP eCLIP9.57□□□□□ -0.88
CPSF7-213ENST00000494016 SPDYE16A6NNV3 312 aaPredicted RBP9.57□□□□□ -0.88
CPSF7-213ENST00000494016 PDIA6Q15084 440 aa9.57□□□□□ -0.88
CPSF7-213ENST00000494016 URB2Q14146 1524 aaKnown RBP9.56□□□□□ -0.88
CPSF7-213ENST00000494016 EVI5O60447 810 aa9.56□□□□□ -0.88
CPSF7-213ENST00000494016 PCGF6Q9BYE7 350 aa9.56□□□□□ -0.88
CPSF7-213ENST00000494016 ANO8Q9HCE9 1232 aaPredicted RBP9.56□□□□□ -0.88
CPSF7-213ENST00000494016 RUSC2Q8N2Y8 1516 aa9.56□□□□□ -0.88
CPSF7-213ENST00000494016 SYNJ1O43426 1573 aa9.55□□□□□ -0.88
CPSF7-213ENST00000494016 NUDT7P0C024 238 aa9.55□□□□□ -0.88
CPSF7-213ENST00000494016 ZNF316A6NFI3 1004 aaPredicted RBP9.53□□□□□ -0.88
CPSF7-213ENST00000494016 ZNF687Q8N1G0 1237 aa9.53□□□□□ -0.88
CPSF7-213ENST00000494016 PTGER2P43116 358 aa9.52□□□□□ -0.89
CPSF7-213ENST00000494016 EEA1Q15075 1411 aa9.52□□□□□ -0.89
CPSF7-213ENST00000494016 TRIM26Q12899 539 aaPredicted RBP9.5□□□□□ -0.89
CPSF7-213ENST00000494016 ANKRD13DQ6ZTN6 518 aa9.49□□□□□ -0.89
CPSF7-213ENST00000494016 LHX6Q9UPM6 363 aa9.49□□□□□ -0.89
CPSF7-213ENST00000494016 TOP2BQ02880 1626 aa9.48□□□□□ -0.89
CPSF7-213ENST00000494016 SEMA3EO15041 775 aa9.47□□□□□ -0.89
CPSF7-213ENST00000494016 TOPBP1Q92547 1522 aa9.46□□□□□ -0.89
CPSF7-213ENST00000494016 BIVM-ERCC5R4GMW8 1640 aa9.46□□□□□ -0.89
CPSF7-213ENST00000494016 TESPA1A2RU30 521 aaPredicted RBP9.46□□□□□ -0.9
CPSF7-213ENST00000494016 NBR1Q14596 966 aa9.46□□□□□ -0.9
CPSF7-213ENST00000494016 TNIKQ9UKE5 1360 aa9.46□□□□□ -0.9
CPSF7-213ENST00000494016 PSDA5PKW4 1024 aaPredicted RBP9.45□□□□□ -0.9
CPSF7-213ENST00000494016 HRCP23327 699 aa9.45□□□□□ -0.9
CPSF7-213ENST00000494016 FOSBP53539 338 aa9.45□□□□□ -0.9
CPSF7-213ENST00000494016 JPH4Q96JJ6 628 aa9.45□□□□□ -0.9
CPSF7-213ENST00000494016 DNMBPQ6XZF7 1577 aa9.45□□□□□ -0.9
CPSF7-213ENST00000494016 PHF14O94880 888 aa9.44□□□□□ -0.9
CPSF7-213ENST00000494016 MLLT3P42568 568 aaPredicted RBP9.44□□□□□ -0.9
CPSF7-213ENST00000494016 DDX12PQ92771 950 aa9.44□□□□□ -0.9
CPSF7-213ENST00000494016 EIF4G3O43432 1585 aaKnown RBP9.43□□□□□ -0.9
CPSF7-213ENST00000494016 CUX1P39880 1505 aa9.43□□□□□ -0.9
CPSF7-213ENST00000494016 ZNF608Q9ULD9 1512 aaPredicted RBP9.43□□□□□ -0.9
CPSF7-213ENST00000494016 BCANQ96GW7 911 aa9.43□□□□□ -0.9
CPSF7-213ENST00000494016 PCDHGA10Q9Y5H3 936 aa9.43□□□□□ -0.9
CPSF7-213ENST00000494016 GRXCR2A6NFK2 248 aa9.42□□□□□ -0.9
CPSF7-213ENST00000494016 ZNF454Q8N9F8 522 aa9.42□□□□□ -0.9
CPSF7-213ENST00000494016 PPP4R3BQ5MIZ7 849 aa9.41□□□□□ -0.9
CPSF7-213ENST00000494016 EPAS1Q99814 870 aa9.41□□□□□ -0.9
CPSF7-213ENST00000494016 DAXXQ9UER7 740 aaPredicted RBP9.41□□□□□ -0.9
CPSF7-213ENST00000494016 TARBP1Q13395 1621 aaKnown RBP9.41□□□□□ -0.9
CPSF7-213ENST00000494016 IFT140Q96RY7 1462 aa9.4□□□□□ -0.9
CPSF7-213ENST00000494016 UBTFP17480 764 aaKnown RBP9.4□□□□□ -0.9
CPSF7-213ENST00000494016 TYW1BQ6NUM6 668 aa9.4□□□□□ -0.9
CPSF7-213ENST00000494016 KIF21BO75037 1637 aa9.4□□□□□ -0.9
CPSF7-213ENST00000494016 GOLGA3Q08378 1498 aa9.4□□□□□ -0.91
CPSF7-213ENST00000494016 OSBPP22059 807 aa9.39□□□□□ -0.91
CPSF7-213ENST00000494016 SMYD5Q6GMV2 418 aa9.39□□□□□ -0.91
CPSF7-213ENST00000494016 FBXW7Q969H0 707 aa9.39□□□□□ -0.91
CPSF7-213ENST00000494016 ZDHHC16Q969W1 377 aa9.39□□□□□ -0.91
CPSF7-213ENST00000494016 PLA2G2EQ9NZK7 142 aa9.39□□□□□ -0.91
CPSF7-213ENST00000494016 CEP162Q5TB80 1403 aa9.39□□□□□ -0.91
CPSF7-213ENST00000494016 POLA1P09884 1462 aaPredicted RBP9.37□□□□□ -0.91
CPSF7-213ENST00000494016 PRIM1P49642 420 aaKnown RBP9.37□□□□□ -0.91
CPSF7-213ENST00000494016 LSM11P83369 360 aaKnown RBP eCLIP9.36□□□□□ -0.91
CPSF7-213ENST00000494016 EN1Q05925 392 aaPredicted RBP9.36□□□□□ -0.91
CPSF7-213ENST00000494016 PPARGC1BQ86YN6 1023 aaKnown RBP9.36□□□□□ -0.91
CPSF7-213ENST00000494016 ADAM33Q9BZ11 813 aa9.36□□□□□ -0.91
CPSF7-213ENST00000494016 CHD1O14646 1710 aa9.36□□□□□ -0.91
CPSF7-213ENST00000494016 BCL2L12Q9HB09 334 aa9.35□□□□□ -0.91
CPSF7-213ENST00000494016 WDR97A6NE52 1622 aa9.34□□□□□ -0.91
CPSF7-213ENST00000494016 RAPGEF2Q9Y4G8 1499 aa9.34□□□□□ -0.91
CPSF7-213ENST00000494016 TULP1O00294 542 aaPredicted RBP9.34□□□□□ -0.91
CPSF7-213ENST00000494016 FGD5Q6ZNL6 1462 aa9.34□□□□□ -0.91
CPSF7-213ENST00000494016 RAD54L2Q9Y4B4 1467 aa9.34□□□□□ -0.91
CPSF7-213ENST00000494016 POTEEQ6S8J3 1075 aa9.32□□□□□ -0.92
CPSF7-213ENST00000494016 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.32□□□□□ -0.92
CPSF7-213ENST00000494016 RBM33Q96EV2 1170 aaKnown RBP9.32□□□□□ -0.92
CPSF7-213ENST00000494016 PRXQ9BXM0 1461 aa9.32□□□□□ -0.92
CPSF7-213ENST00000494016 MAP3K7O43318 606 aa9.31□□□□□ -0.92
CPSF7-213ENST00000494016 PBX2P40425 430 aa9.31□□□□□ -0.92
CPSF7-213ENST00000494016 C6orf132Q5T0Z8 1188 aa9.31□□□□□ -0.92
CPSF7-213ENST00000494016 RBM26Q5T8P6 1007 aaKnown RBP9.31□□□□□ -0.92
CPSF7-213ENST00000494016 AQRO60306 1485 aaKnown RBP eCLIP9.31□□□□□ -0.921e-7■■■■■ 38.9
CPSF7-213ENST00000494016 KIF27Q86VH2 1401 aa9.31□□□□□ -0.92
CPSF7-213ENST00000494016 PTPREP23469 700 aa9.3□□□□□ -0.92
CPSF7-213ENST00000494016 RIMBP3CA6NJZ7 1639 aa9.3□□□□□ -0.92
CPSF7-213ENST00000494016 RIMBP3BA6NNM3 1639 aa9.3□□□□□ -0.92
CPSF7-213ENST00000494016 RIMBP3Q9UFD9 1639 aa9.3□□□□□ -0.92
CPSF7-213ENST00000494016 ARHGAP33O14559 1287 aa9.29□□□□□ -0.92
CPSF7-213ENST00000494016 TSR1Q2NL82 804 aaKnown RBP9.29□□□□□ -0.92
CPSF7-213ENST00000494016 CYB5RLQ6IPT4 315 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms