RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 SLC4A5Q9BY07 1137 aa8.37□□□□□ -1.07
PTCD3-216ENST00000487043 ANO8Q9HCE9 1232 aaPredicted RBP8.37□□□□□ -1.07
PTCD3-216ENST00000487043 ADAM33Q9BZ11 813 aa8.36□□□□□ -1.07
PTCD3-216ENST00000487043 MRPL50Q8N5N7 158 aaKnown RBP8.35□□□□□ -1.07
PTCD3-216ENST00000487043 KCNV2Q8TDN2 545 aa8.35□□□□□ -1.07
PTCD3-216ENST00000487043 ZBED2Q9BTP6 218 aa8.35□□□□□ -1.07
PTCD3-216ENST00000487043 THSD4Q6ZMP0 1018 aa8.33□□□□□ -1.08
PTCD3-216ENST00000487043 WNT2BQ93097 391 aa8.33□□□□□ -1.08
PTCD3-216ENST00000487043 NBPF3Q9H094 633 aa8.33□□□□□ -1.08
PTCD3-216ENST00000487043 BHMG1C9JSJ3 638 aaPredicted RBP8.32□□□□□ -1.08
PTCD3-216ENST00000487043 EMILIN3Q9NT22 766 aa8.32□□□□□ -1.08
PTCD3-216ENST00000487043 PCDHGA10Q9Y5H3 936 aa8.29□□□□□ -1.08
PTCD3-216ENST00000487043 PPP1R3GB7ZBB8 358 aa8.28□□□□□ -1.08
PTCD3-216ENST00000487043 CAMK2BQ13554 666 aa8.27□□□□□ -1.09
PTCD3-216ENST00000487043 PROX2Q3B8N5 592 aa8.27□□□□□ -1.09
PTCD3-216ENST00000487043 TYW1BQ6NUM6 668 aa8.27□□□□□ -1.09
PTCD3-216ENST00000487043 LMOD2Q6P5Q4 547 aa8.27□□□□□ -1.09
PTCD3-216ENST00000487043 FBXW7Q969H0 707 aa8.27□□□□□ -1.09
PTCD3-216ENST00000487043 PHF14O94880 888 aa8.26□□□□□ -1.09
PTCD3-216ENST00000487043 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.26□□□□□ -1.09
PTCD3-216ENST00000487043 COL9A1P20849 921 aa8.25□□□□□ -1.09
PTCD3-216ENST00000487043 ANKK1Q8NFD2 765 aa8.25□□□□□ -1.09
PTCD3-216ENST00000487043 RABGEF1Q9UJ41 708 aa8.25□□□□□ -1.09
PTCD3-216ENST00000487043 TULP1O00294 542 aaPredicted RBP8.23□□□□□ -1.09
PTCD3-216ENST00000487043 DPYSL4O14531 572 aa8.23□□□□□ -1.09
PTCD3-216ENST00000487043 E2F4Q16254 413 aa8.23□□□□□ -1.09
PTCD3-216ENST00000487043 ARHGEF1Q92888 912 aaKnown RBP8.22□□□□□ -1.09
PTCD3-216ENST00000487043 IFFO2Q5TF58 517 aa8.21□□□□□ -1.1
PTCD3-216ENST00000487043 RBM33Q96EV2 1170 aaKnown RBP8.21□□□□□ -1.1
PTCD3-216ENST00000487043 EPAS1Q99814 870 aa8.21□□□□□ -1.1
PTCD3-216ENST00000487043 KIAA1468Q9P260 1216 aa8.21□□□□□ -1.1
PTCD3-216ENST00000487043 BCAMP50895 628 aa8.2□□□□□ -1.1
PTCD3-216ENST00000487043 C6orf132Q5T0Z8 1188 aa8.2□□□□□ -1.1
PTCD3-216ENST00000487043 LAPTM4BQ86VI4 370 aa8.2□□□□□ -1.1
PTCD3-216ENST00000487043 GTF3C3Q9Y5Q9 886 aa8.2□□□□□ -1.1
PTCD3-216ENST00000487043 A0A0G2JS52 829 aa8.19□□□□□ -1.1
PTCD3-216ENST00000487043 RGS20O76081 388 aa8.19□□□□□ -1.1
PTCD3-216ENST00000487043 DDX12PQ92771 950 aa8.19□□□□□ -1.1
PTCD3-216ENST00000487043 SEPT9Q9UHD8 586 aaPredicted RBP8.18□□□□□ -1.1
PTCD3-216ENST00000487043 SOWAHBA6NEL2 793 aa8.17□□□□□ -1.1
PTCD3-216ENST00000487043 SEMA3EO15041 775 aa8.17□□□□□ -1.1
PTCD3-216ENST00000487043 TMEM132AQ24JP5 1023 aa8.17□□□□□ -1.1
PTCD3-216ENST00000487043 ZFRQ96KR1 1074 aaKnown RBP8.17□□□□□ -1.1
PTCD3-216ENST00000487043 ONECUT3O60422 494 aaPredicted RBP8.16□□□□□ -1.1
PTCD3-216ENST00000487043 TIMELESSQ9UNS1 1208 aa8.16□□□□□ -1.1
PTCD3-216ENST00000487043 TRIM6-TRIM34B2RNG4 842 aa8.15□□□□□ -1.1
PTCD3-216ENST00000487043 IRX2Q9BZI1 471 aaPredicted RBP8.15□□□□□ -1.1
PTCD3-216ENST00000487043 TESPA1A2RU30 521 aaPredicted RBP8.14□□□□□ -1.11
PTCD3-216ENST00000487043 ZC3H15Q8WU90 426 aaKnown RBP8.14□□□□□ -1.11
PTCD3-216ENST00000487043 MAP3K7O43318 606 aa8.13□□□□□ -1.11
PTCD3-216ENST00000487043 FAM98CQ17RN3 349 aaKnown RBP8.13□□□□□ -1.11
PTCD3-216ENST00000487043 NYAP1Q6ZVC0 841 aa8.13□□□□□ -1.11
PTCD3-216ENST00000487043 WBP1LQ9NX94 342 aa8.13□□□□□ -1.11
PTCD3-216ENST00000487043 ARIH1Q9Y4X5 557 aaPredicted RBP8.13□□□□□ -1.11
PTCD3-216ENST00000487043 PDIA6Q15084 440 aa8.12□□□□□ -1.11
PTCD3-216ENST00000487043 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.12□□□□□ -1.11
PTCD3-216ENST00000487043 ITGBL1O95965 494 aaPredicted RBP8.11□□□□□ -1.11
PTCD3-216ENST00000487043 PACS2Q86VP3 889 aa8.11□□□□□ -1.11
PTCD3-216ENST00000487043 LRCH3Q96II8 777 aa8.11□□□□□ -1.11
PTCD3-216ENST00000487043 KCNC4Q03721 635 aa8.1□□□□□ -1.11
PTCD3-216ENST00000487043 EN1Q05925 392 aaPredicted RBP8.1□□□□□ -1.11
PTCD3-216ENST00000487043 TSR1Q2NL82 804 aaKnown RBP8.1□□□□□ -1.11
PTCD3-216ENST00000487043 HPS5Q9UPZ3 1129 aa8.1□□□□□ -1.11
PTCD3-216ENST00000487043 BRPF1P55201 1214 aaPredicted RBP8.09□□□□□ -1.11
PTCD3-216ENST00000487043 TSR3Q9UJK0 312 aaKnown RBP8.09□□□□□ -1.11
PTCD3-216ENST00000487043 SPDYE16A6NNV3 312 aaPredicted RBP8.08□□□□□ -1.12
PTCD3-216ENST00000487043 SMYD5Q6GMV2 418 aa8.08□□□□□ -1.12
PTCD3-216ENST00000487043 SLC24A3Q9HC58 644 aa8.08□□□□□ -1.12
PTCD3-216ENST00000487043 TSKSQ9UJT2 592 aa8.07□□□□□ -1.12
PTCD3-216ENST00000487043 GRXCR2A6NFK2 248 aa8.06□□□□□ -1.12
PTCD3-216ENST00000487043 NEUROD2Q15784 382 aa8.06□□□□□ -1.12
PTCD3-216ENST00000487043 PPP4CP60510 307 aa8.05□□□□□ -1.12
PTCD3-216ENST00000487043 SMAPO00193 183 aa8.04□□□□□ -1.12
PTCD3-216ENST00000487043 CDCA7LQ96GN5 454 aa8.04□□□□□ -1.12
PTCD3-216ENST00000487043 PRIM1P49642 420 aaKnown RBP8.03□□□□□ -1.12
PTCD3-216ENST00000487043 PRSS12P56730 875 aa8.03□□□□□ -1.12
PTCD3-216ENST00000487043 ERICH6Q7L0X2 663 aa8.03□□□□□ -1.12
PTCD3-216ENST00000487043 CERKQ8TCT0 537 aa8.03□□□□□ -1.12
PTCD3-216ENST00000487043 ZMYND10O75800 440 aa8.02□□□□□ -1.13
PTCD3-216ENST00000487043 SAMD7Q7Z3H4 446 aa8.02□□□□□ -1.13
PTCD3-216ENST00000487043 NBPF26B4DH59 902 aa8.01□□□□□ -1.13
PTCD3-216ENST00000487043 PNMA3Q9UL41 463 aa8.01□□□□□ -1.13
PTCD3-216ENST00000487043 RNF40O75150 1001 aa8□□□□□ -1.13
PTCD3-216ENST00000487043 Q6ZNB5 142 aa8□□□□□ -1.13
PTCD3-216ENST00000487043 C14orf37Q86TY3 774 aa8□□□□□ -1.13
PTCD3-216ENST00000487043 MLLT3P42568 568 aaPredicted RBP7.99□□□□□ -1.13
PTCD3-216ENST00000487043 HDGFP51858 240 aaKnown RBP7.99□□□□□ -1.13
PTCD3-216ENST00000487043 RBM26Q5T8P6 1007 aaKnown RBP7.99□□□□□ -1.13
PTCD3-216ENST00000487043 TATDN2Q93075 761 aa7.99□□□□□ -1.13
PTCD3-216ENST00000487043 FAM198AQ9UFP1 575 aa7.99□□□□□ -1.13
PTCD3-216ENST00000487043 OSBPP22059 807 aa7.98□□□□□ -1.13
PTCD3-216ENST00000487043 BARGINQ6ZT62 677 aa7.97□□□□□ -1.13
PTCD3-216ENST00000487043 GPIHBP1Q8IV16 184 aa7.97□□□□□ -1.13
PTCD3-216ENST00000487043 CDHR5Q9HBB8 845 aa7.97□□□□□ -1.13
PTCD3-216ENST00000487043 NUDT18Q6ZVK8 323 aa7.96□□□□□ -1.14
PTCD3-216ENST00000487043 C3orf80F5H4A9 247 aa7.95□□□□□ -1.14
PTCD3-216ENST00000487043 TJAP1Q5JTD0 557 aa7.95□□□□□ -1.14
PTCD3-216ENST00000487043 KRI1Q8N9T8 703 aaKnown RBP7.95□□□□□ -1.14
PTCD3-216ENST00000487043 MTRQ99707 1265 aa7.94□□□□□ -1.14
PTCD3-216ENST00000487043 IL21Q9HBE4 155 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms