RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 RUSC2Q8N2Y8 1516 aa9.78□□□□□ -0.84
PTPN4-210ENST00000485247 ASXL2Q76L83 1435 aa9.76□□□□□ -0.85
PTPN4-210ENST00000485247 SOCS7O14512 581 aa9.76□□□□□ -0.85
PTPN4-210ENST00000485247 ILDR2Q71H61 639 aa9.76□□□□□ -0.85
PTPN4-210ENST00000485247 SNPHO15079 494 aa9.75□□□□□ -0.85
PTPN4-210ENST00000485247 GLI2P10070 1586 aa9.75□□□□□ -0.85
PTPN4-210ENST00000485247 PTPRGP23470 1445 aa9.74□□□□□ -0.85
PTPN4-210ENST00000485247 PLB1Q6P1J6 1458 aa9.74□□□□□ -0.85
PTPN4-210ENST00000485247 HOXB3P14651 431 aaPredicted RBP9.74□□□□□ -0.85
PTPN4-210ENST00000485247 TOP2BQ02880 1626 aa9.74□□□□□ -0.85
PTPN4-210ENST00000485247 ABCC2Q92887 1545 aa9.72□□□□□ -0.85
PTPN4-210ENST00000485247 KIF3CO14782 793 aa9.71□□□□□ -0.86
PTPN4-210ENST00000485247 DISP3Q9P2K9 1392 aa9.71□□□□□ -0.86
PTPN4-210ENST00000485247 TEX14Q8IWB6 1497 aa9.71□□□□□ -0.86
PTPN4-210ENST00000485247 KIAA0586Q9BVV6 1533 aa9.71□□□□□ -0.86
PTPN4-210ENST00000485247 GTPBP6O43824 516 aaPredicted RBP9.69□□□□□ -0.86
PTPN4-210ENST00000485247 EPRSP07814 1512 aaKnown RBP9.69□□□□□ -0.86
PTPN4-210ENST00000485247 CUL7Q14999 1698 aa9.68□□□□□ -0.86
PTPN4-210ENST00000485247 MAP3K4Q9Y6R4 1608 aa9.68□□□□□ -0.86
PTPN4-210ENST00000485247 BIVM-ERCC5R4GMW8 1640 aa9.68□□□□□ -0.86
PTPN4-210ENST00000485247 C2orf72A6NCS6 295 aa9.68□□□□□ -0.86
PTPN4-210ENST00000485247 TNIKQ9UKE5 1360 aa9.67□□□□□ -0.86
PTPN4-210ENST00000485247 MARVELD3Q96A59 401 aa9.67□□□□□ -0.86
PTPN4-210ENST00000485247 DOK7Q18PE1 504 aa9.65□□□□□ -0.86
PTPN4-210ENST00000485247 UACAQ9BZF9 1416 aa9.65□□□□□ -0.87
PTPN4-210ENST00000485247 UHRF1BP1LA0JNW5 1464 aa9.64□□□□□ -0.87
PTPN4-210ENST00000485247 PTPRMP28827 1452 aa9.64□□□□□ -0.87
PTPN4-210ENST00000485247 CARMIL2Q6F5E8 1435 aa9.64□□□□□ -0.87
PTPN4-210ENST00000485247 KIF21BO75037 1637 aa9.64□□□□□ -0.87
PTPN4-210ENST00000485247 CERKQ8TCT0 537 aa9.63□□□□□ -0.87
PTPN4-210ENST00000485247 RYDENQ9NUL5 291 aaKnown RBP9.63□□□□□ -0.87
PTPN4-210ENST00000485247 KDM5BQ9UGL1 1544 aa9.61□□□□□ -0.87
PTPN4-210ENST00000485247 HOXB1P14653 301 aaPredicted RBP9.61□□□□□ -0.87
PTPN4-210ENST00000485247 ZNF710Q8N1W2 664 aa9.61□□□□□ -0.87
PTPN4-210ENST00000485247 TMC2Q8TDI7 906 aa9.61□□□□□ -0.87
PTPN4-210ENST00000485247 PCF11O94913 1555 aaKnown RBP9.61□□□□□ -0.87
PTPN4-210ENST00000485247 IGF1RP08069 1367 aa9.61□□□□□ -0.87
PTPN4-210ENST00000485247 EMP3P54852 163 aa9.6□□□□□ -0.87
PTPN4-210ENST00000485247 CD109Q6YHK3 1445 aa9.59□□□□□ -0.87
PTPN4-210ENST00000485247 POTEB3A0JP26 581 aa9.59□□□□□ -0.87
PTPN4-210ENST00000485247 HSPA2P54652 639 aa9.59□□□□□ -0.87
PTPN4-210ENST00000485247 POTEBQ6S5H4 581 aa9.59□□□□□ -0.87
PTPN4-210ENST00000485247 KCNH8Q96L42 1107 aa9.59□□□□□ -0.87
PTPN4-210ENST00000485247 ZCCHC11Q5TAX3 1644 aaKnown RBP9.59□□□□□ -0.87
PTPN4-210ENST00000485247 GPR153Q6NV75 609 aa9.58□□□□□ -0.88
PTPN4-210ENST00000485247 WDR7Q9Y4E6 1490 aa9.58□□□□□ -0.88
PTPN4-210ENST00000485247 RIMBP2O15034 1052 aa9.57□□□□□ -0.88
PTPN4-210ENST00000485247 CDAN1Q8IWY9 1227 aa9.57□□□□□ -0.88
PTPN4-210ENST00000485247 BBXQ8WY36 941 aaPredicted RBP9.57□□□□□ -0.88
PTPN4-210ENST00000485247 ZSWIM6Q9HCJ5 1215 aa9.57□□□□□ -0.88
PTPN4-210ENST00000485247 GPHNQ9NQX3 736 aaPredicted RBP9.57□□□□□ -0.88
PTPN4-210ENST00000485247 ADAMTSL3P82987 1691 aa9.57□□□□□ -0.88
PTPN4-210ENST00000485247 MAGI3Q5TCQ9 1506 aa9.56□□□□□ -0.88
PTPN4-210ENST00000485247 PCDH10Q9P2E7 1040 aa9.56□□□□□ -0.88
PTPN4-210ENST00000485247 FAM205CA6NFA0 338 aa9.55□□□□□ -0.88
PTPN4-210ENST00000485247 FOXK1P85037 733 aa9.55□□□□□ -0.88
PTPN4-210ENST00000485247 DSG2Q14126 1118 aa9.55□□□□□ -0.88
PTPN4-210ENST00000485247 KHSRPQ92945 711 aaKnown RBP eCLIP9.55□□□□□ -0.883e-6■■■■□ 21.2
PTPN4-210ENST00000485247 HS3ST6Q96QI5 342 aa9.55□□□□□ -0.88
PTPN4-210ENST00000485247 CRISPLD2Q9H0B8 497 aa9.55□□□□□ -0.88
PTPN4-210ENST00000485247 DISP1Q96F81 1524 aa9.55□□□□□ -0.88
PTPN4-210ENST00000485247 ARID4BQ4LE39 1312 aaPredicted RBP9.55□□□□□ -0.88
PTPN4-210ENST00000485247 NCKAP5LQ9HCH0 1330 aa9.55□□□□□ -0.88
PTPN4-210ENST00000485247 ARSIQ5FYB1 569 aa9.54□□□□□ -0.88
PTPN4-210ENST00000485247 IQGAP2Q13576 1575 aa9.54□□□□□ -0.88
PTPN4-210ENST00000485247 SPATA31D1Q6ZQQ2 1576 aa9.54□□□□□ -0.88
PTPN4-210ENST00000485247 CARMIL1Q5VZK9 1371 aa9.53□□□□□ -0.88
PTPN4-210ENST00000485247 SLC34A2O95436 690 aa9.53□□□□□ -0.88
PTPN4-210ENST00000485247 KIF27Q86VH2 1401 aa9.53□□□□□ -0.88
PTPN4-210ENST00000485247 CFAP43Q8NDM7 1665 aa9.52□□□□□ -0.89
PTPN4-210ENST00000485247 CADPS2Q86UW7 1296 aa9.52□□□□□ -0.89
PTPN4-210ENST00000485247 PLPP6Q8IY26 295 aa9.52□□□□□ -0.89
PTPN4-210ENST00000485247 MADDQ8WXG6 1647 aa9.52□□□□□ -0.89
PTPN4-210ENST00000485247 SUPT5HO00267 1087 aaKnown RBP9.51□□□□□ -0.89
PTPN4-210ENST00000485247 RAPGEF3O95398 923 aa9.51□□□□□ -0.89
PTPN4-210ENST00000485247 ARAP3Q8WWN8 1544 aa9.51□□□□□ -0.89
PTPN4-210ENST00000485247 PCDHGA4Q9Y5G9 962 aa9.5□□□□□ -0.89
PTPN4-210ENST00000485247 BCORL1Q5H9F3 1711 aa9.5□□□□□ -0.89
PTPN4-210ENST00000485247 ERBB3P21860 1342 aa9.48□□□□□ -0.89
PTPN4-210ENST00000485247 RIMS1Q86UR5 1692 aaKnown RBP9.48□□□□□ -0.89
PTPN4-210ENST00000485247 NUDT7P0C024 238 aa9.47□□□□□ -0.89
PTPN4-210ENST00000485247 VARS2Q5ST30 1063 aaKnown RBP9.47□□□□□ -0.89
PTPN4-210ENST00000485247 PPP1R15BQ5SWA1 713 aa9.46□□□□□ -0.9
PTPN4-210ENST00000485247 PTCD2Q8WV60 388 aaKnown RBP9.46□□□□□ -0.9
PTPN4-210ENST00000485247 KRTAP3-3Q9BYR6 98 aa9.46□□□□□ -0.9
PTPN4-210ENST00000485247 KRTAP3-2Q9BYR7 98 aa9.46□□□□□ -0.9
PTPN4-210ENST00000485247 UGGT2Q9NYU1 1516 aa9.46□□□□□ -0.9
PTPN4-210ENST00000485247 KIAA0556O60303 1618 aa9.45□□□□□ -0.9
PTPN4-210ENST00000485247 PDE4AP27815 886 aa9.45□□□□□ -0.9
PTPN4-210ENST00000485247 PLSCR2Q9NRY7 297 aa9.45□□□□□ -0.9
PTPN4-210ENST00000485247 ARID3CA6NKF2 412 aa9.44□□□□□ -0.9
PTPN4-210ENST00000485247 MFSD10Q14728 455 aa9.44□□□□□ -0.9
PTPN4-210ENST00000485247 SPRYD3Q8NCJ5 442 aa9.44□□□□□ -0.9
PTPN4-210ENST00000485247 LARP6Q9BRS8 491 aaKnown RBP9.44□□□□□ -0.9
PTPN4-210ENST00000485247 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.44□□□□□ -0.9
PTPN4-210ENST00000485247 PHLDB1Q86UU1 1377 aa9.43□□□□□ -0.9
PTPN4-210ENST00000485247 ZNF316A6NFI3 1004 aaPredicted RBP9.43□□□□□ -0.9
PTPN4-210ENST00000485247 PAXIP1Q6ZW49 1069 aaPredicted RBP9.43□□□□□ -0.9
PTPN4-210ENST00000485247 DDX27Q96GQ7 796 aaKnown RBP9.42□□□□□ -0.9
PTPN4-210ENST00000485247 MLECQ14165 292 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms