RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.37□□□□□ -0.91
VPS50-216ENST00000484954 ITGBL1O95965 494 aaPredicted RBP9.36□□□□□ -0.91
VPS50-216ENST00000484954 RABGEF1Q9UJ41 708 aa9.35□□□□□ -0.91
VPS50-216ENST00000484954 COL9A1P20849 921 aa9.34□□□□□ -0.91
VPS50-216ENST00000484954 PPP1R3GB7ZBB8 358 aa9.33□□□□□ -0.92
VPS50-216ENST00000484954 PDE4AP27815 886 aa9.33□□□□□ -0.92
VPS50-216ENST00000484954 MAP3K9P80192 1104 aa9.33□□□□□ -0.92
VPS50-216ENST00000484954 SOWAHBA6NEL2 793 aa9.31□□□□□ -0.92
VPS50-216ENST00000484954 TRAF7Q6Q0C0 670 aa9.31□□□□□ -0.92
VPS50-216ENST00000484954 LARP6Q9BRS8 491 aaKnown RBP9.31□□□□□ -0.92
VPS50-216ENST00000484954 WBP1LQ9NX94 342 aa9.31□□□□□ -0.92
VPS50-216ENST00000484954 PCDHGA10Q9Y5H3 936 aa9.31□□□□□ -0.92
VPS50-216ENST00000484954 KCNC4Q03721 635 aa9.29□□□□□ -0.92
VPS50-216ENST00000484954 ZFRQ96KR1 1074 aaKnown RBP9.29□□□□□ -0.92
VPS50-216ENST00000484954 KIAA1468Q9P260 1216 aa9.29□□□□□ -0.92
VPS50-216ENST00000484954 SEPT9Q9UHD8 586 aaPredicted RBP9.28□□□□□ -0.92
VPS50-216ENST00000484954 MFSD10Q14728 455 aa9.27□□□□□ -0.93
VPS50-216ENST00000484954 DDX27Q96GQ7 796 aaKnown RBP9.27□□□□□ -0.93
VPS50-216ENST00000484954 EMILIN3Q9NT22 766 aa9.26□□□□□ -0.93
VPS50-216ENST00000484954 LAPTM4BQ86VI4 370 aa9.25□□□□□ -0.93
VPS50-216ENST00000484954 TYW1BQ6NUM6 668 aa9.24□□□□□ -0.93
VPS50-216ENST00000484954 GFRA3O60609 400 aa9.23□□□□□ -0.93
VPS50-216ENST00000484954 LAPTM4AQ15012 233 aa9.23□□□□□ -0.93
VPS50-216ENST00000484954 NYAP1Q6ZVC0 841 aa9.23□□□□□ -0.93
VPS50-216ENST00000484954 TSHZ2Q9NRE2 1034 aa9.23□□□□□ -0.93
VPS50-216ENST00000484954 HPS5Q9UPZ3 1129 aa9.22□□□□□ -0.93
VPS50-216ENST00000484954 FBXW7Q969H0 707 aa9.21□□□□□ -0.94
VPS50-216ENST00000484954 PHF14O94880 888 aa9.2□□□□□ -0.94
VPS50-216ENST00000484954 ZNF775Q96BV0 537 aaPredicted RBP9.2□□□□□ -0.94
VPS50-216ENST00000484954 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.2□□□□□ -0.94
VPS50-216ENST00000484954 TSR3Q9UJK0 312 aaKnown RBP9.19□□□□□ -0.94
VPS50-216ENST00000484954 C6orf132Q5T0Z8 1188 aa9.18□□□□□ -0.94
VPS50-216ENST00000484954 RBM33Q96EV2 1170 aaKnown RBP9.18□□□□□ -0.94
VPS50-216ENST00000484954 LRCH3Q96II8 777 aa9.18□□□□□ -0.94
VPS50-216ENST00000484954 TRIM6-TRIM34B2RNG4 842 aa9.17□□□□□ -0.94
VPS50-216ENST00000484954 FAM98CQ17RN3 349 aaKnown RBP9.17□□□□□ -0.94
VPS50-216ENST00000484954 LOC100996750A0A140TA64 210 aa9.16□□□□□ -0.94
VPS50-216ENST00000484954 ONECUT3O60422 494 aaPredicted RBP9.16□□□□□ -0.94
VPS50-216ENST00000484954 KRTAP4-6Q9BYQ5 205 aa9.16□□□□□ -0.94
VPS50-216ENST00000484954 PLCB2Q00722 1185 aa9.15□□□□□ -0.94
VPS50-216ENST00000484954 CAMK2BQ13554 666 aa9.15□□□□□ -0.94
VPS50-216ENST00000484954 PRKD2Q9BZL6 878 aa9.15□□□□□ -0.94
VPS50-216ENST00000484954 ZNF787Q6DD87 383 aa9.12□□□□□ -0.95
VPS50-216ENST00000484954 EPAS1Q99814 870 aa9.12□□□□□ -0.95
VPS50-216ENST00000484954 DPYSL4O14531 572 aa9.11□□□□□ -0.95
VPS50-216ENST00000484954 PPP4CP60510 307 aa9.11□□□□□ -0.95
VPS50-216ENST00000484954 DDX12PQ92771 950 aa9.1□□□□□ -0.95
VPS50-216ENST00000484954 NRG2O14511 850 aaPredicted RBP9.09□□□□□ -0.95
VPS50-216ENST00000484954 TJAP1Q5JTD0 557 aa9.09□□□□□ -0.95
VPS50-216ENST00000484954 TSKSQ9UJT2 592 aa9.09□□□□□ -0.95
VPS50-216ENST00000484954 SMAPO00193 183 aa9.08□□□□□ -0.96
VPS50-216ENST00000484954 PPP1R18Q6NYC8 613 aa9.07□□□□□ -0.96
VPS50-216ENST00000484954 E2F4Q16254 413 aa9.06□□□□□ -0.96
VPS50-216ENST00000484954 SAMD7Q7Z3H4 446 aa9.06□□□□□ -0.96
VPS50-216ENST00000484954 PACS2Q86VP3 889 aa9.06□□□□□ -0.96
VPS50-216ENST00000484954 MTRQ99707 1265 aa9.06□□□□□ -0.96
VPS50-216ENST00000484954 WDR70Q9NW82 654 aa9.06□□□□□ -0.96
VPS50-216ENST00000484954 TSR1Q2NL82 804 aaKnown RBP9.05□□□□□ -0.96
VPS50-216ENST00000484954 ZNF516Q92618 1163 aa9.04□□□□□ -0.96
VPS50-216ENST00000484954 MAP3K7O43318 606 aa9.03□□□□□ -0.96
VPS50-216ENST00000484954 IL21Q9HBE4 155 aa9.03□□□□□ -0.96
VPS50-216ENST00000484954 V9GY48 417 aaPredicted RBP9.03□□□□□ -0.96
VPS50-216ENST00000484954 HAP1P54257 671 aaPredicted RBP9.02□□□□□ -0.97
VPS50-216ENST00000484954 NBR1Q14596 966 aa9.02□□□□□ -0.97
VPS50-216ENST00000484954 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.02□□□□□ -0.97
VPS50-216ENST00000484954 PDZRN3Q9UPQ7 1066 aa9.02□□□□□ -0.97
VPS50-216ENST00000484954 RNF40O75150 1001 aa9.01□□□□□ -0.97
VPS50-216ENST00000484954 EN1Q05925 392 aaPredicted RBP9□□□□□ -0.97
VPS50-216ENST00000484954 KCNV2Q8TDN2 545 aa9□□□□□ -0.97
VPS50-216ENST00000484954 FAM198AQ9UFP1 575 aa9□□□□□ -0.97
VPS50-216ENST00000484954 PDIA6Q15084 440 aa8.99□□□□□ -0.97
VPS50-216ENST00000484954 NKX2-3Q8TAU0 364 aa8.99□□□□□ -0.97
VPS50-216ENST00000484954 C3orf80F5H4A9 247 aa8.98□□□□□ -0.97
VPS50-216ENST00000484954 CDCA7LQ96GN5 454 aa8.98□□□□□ -0.97
VPS50-216ENST00000484954 ARIH1Q9Y4X5 557 aaPredicted RBP8.98□□□□□ -0.97
VPS50-216ENST00000484954 LCE2AQ5TA79 106 aaPredicted RBP8.97□□□□□ -0.97
VPS50-216ENST00000484954 PNMA3Q9UL41 463 aa8.97□□□□□ -0.97
VPS50-216ENST00000484954 KDM2AQ9Y2K7 1162 aa8.97□□□□□ -0.97
VPS50-216ENST00000484954 APLP1P51693 650 aa8.96□□□□□ -0.98
VPS50-216ENST00000484954 PRSS12P56730 875 aa8.95□□□□□ -0.98
VPS50-216ENST00000484954 TATDN2Q93075 761 aa8.95□□□□□ -0.98
VPS50-216ENST00000484954 SPDYE16A6NNV3 312 aaPredicted RBP8.93□□□□□ -0.98
VPS50-216ENST00000484954 PRIM1P49642 420 aaKnown RBP8.93□□□□□ -0.98
VPS50-216ENST00000484954 COPS2P61201 443 aa8.93□□□□□ -0.98
VPS50-216ENST00000484954 NBPF26B4DH59 902 aa8.92□□□□□ -0.98
VPS50-216ENST00000484954 GRXCR2A6NFK2 248 aa8.9□□□□□ -0.98
VPS50-216ENST00000484954 GGCXP38435 758 aa8.9□□□□□ -0.98
VPS50-216ENST00000484954 HDGFP51858 240 aaKnown RBP8.9□□□□□ -0.98
VPS50-216ENST00000484954 NUDT18Q6ZVK8 323 aa8.9□□□□□ -0.98
VPS50-216ENST00000484954 ARHGEF1Q92888 912 aaKnown RBP8.89□□□□□ -0.99
VPS50-216ENST00000484954 CDHR5Q9HBB8 845 aa8.88□□□□□ -0.99
VPS50-216ENST00000484954 MLLT3P42568 568 aaPredicted RBP8.87□□□□□ -0.99
VPS50-216ENST00000484954 POTECB2RU33 542 aa8.86□□□□□ -0.99
VPS50-216ENST00000484954 TRIM67Q6ZTA4 783 aa8.86□□□□□ -0.99
VPS50-216ENST00000484954 CERKQ8TCT0 537 aa8.86□□□□□ -0.99
VPS50-216ENST00000484954 OSBPP22059 807 aa8.85□□□□□ -0.99
VPS50-216ENST00000484954 SWT1Q5T5J6 900 aaKnown RBP8.85□□□□□ -0.99
VPS50-216ENST00000484954 PKDCCQ504Y2 493 aa8.84□□□□□ -0.99
VPS50-216ENST00000484954 TREML4Q6UXN2 200 aa8.84□□□□□ -0.99
VPS50-216ENST00000484954 P3H3Q8IVL6 736 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 9442.1 ms