RNA–Protein interactions for RNA: ENST00000475401.1

TM9SF3-204, Transcript of transmembrane 9 superfamily member 3, humanhuman

TSL 2

Gene TM9SF3, Length 511 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-204ENST00000475401 PRIM1P49642 420 aaKnown RBP12.78□□□□□ -0.36
TM9SF3-204ENST00000475401 TSR1Q2NL82 804 aaKnown RBP12.77□□□□□ -0.37
TM9SF3-204ENST00000475401 HIC1Q14526 733 aa12.76□□□□□ -0.37
TM9SF3-204ENST00000475401 PRKCSHP14314 528 aaPredicted RBP12.75□□□□□ -0.37
TM9SF3-204ENST00000475401 PTGDRQ13258 359 aa12.74□□□□□ -0.37
TM9SF3-204ENST00000475401 KRI1Q8N9T8 703 aaKnown RBP12.74□□□□□ -0.37
TM9SF3-204ENST00000475401 CDHR5Q9HBB8 845 aa12.74□□□□□ -0.37
TM9SF3-204ENST00000475401 KCNK17Q96T54 332 aa12.73□□□□□ -0.37
TM9SF3-204ENST00000475401 GNPATO15228 680 aa12.72□□□□□ -0.37
TM9SF3-204ENST00000475401 ZMYND10O75800 440 aa12.72□□□□□ -0.37
TM9SF3-204ENST00000475401 HS3ST6Q96QI5 342 aa12.72□□□□□ -0.37
TM9SF3-204ENST00000475401 PBX2P40425 430 aa12.71□□□□□ -0.37
TM9SF3-204ENST00000475401 ZNF687Q8N1G0 1237 aa12.71□□□□□ -0.37
TM9SF3-204ENST00000475401 PPP1R3GB7ZBB8 358 aa12.7□□□□□ -0.38
TM9SF3-204ENST00000475401 LCE2DQ5TA82 110 aaPredicted RBP12.7□□□□□ -0.38
TM9SF3-204ENST00000475401 BARGINQ6ZT62 677 aa12.7□□□□□ -0.38
TM9SF3-204ENST00000475401 ARHGAP33O14559 1287 aa12.69□□□□□ -0.38
TM9SF3-204ENST00000475401 GPR37O15354 613 aa12.68□□□□□ -0.38
TM9SF3-204ENST00000475401 NPDC1Q9NQX5 325 aaPredicted RBP12.67□□□□□ -0.38
TM9SF3-204ENST00000475401 RBM27Q9P2N5 1060 aaKnown RBP12.65□□□□□ -0.38
TM9SF3-204ENST00000475401 COL9A1P20849 921 aa12.64□□□□□ -0.39
TM9SF3-204ENST00000475401 PRSS12P56730 875 aa12.64□□□□□ -0.39
TM9SF3-204ENST00000475401 MINK1Q8N4C8 1332 aaPredicted RBP12.63□□□□□ -0.39
TM9SF3-204ENST00000475401 PSEN2P49810 448 aa12.63□□□□□ -0.39
TM9SF3-204ENST00000475401 MAP2K5Q13163 448 aa12.63□□□□□ -0.39
TM9SF3-204ENST00000475401 CDCA7LQ96GN5 454 aa12.63□□□□□ -0.39
TM9SF3-204ENST00000475401 AXIN2Q9Y2T1 843 aa12.62□□□□□ -0.39
TM9SF3-204ENST00000475401 PADI6Q6TGC4 694 aa12.61□□□□□ -0.39
TM9SF3-204ENST00000475401 PACS2Q86VP3 889 aa12.6□□□□□ -0.39
TM9SF3-204ENST00000475401 AK7Q96M32 723 aa12.6□□□□□ -0.39
TM9SF3-204ENST00000475401 SLC24A3Q9HC58 644 aa12.6□□□□□ -0.39
TM9SF3-204ENST00000475401 POTEB3A0JP26 581 aa12.59□□□□□ -0.39
TM9SF3-204ENST00000475401 POTEBQ6S5H4 581 aa12.59□□□□□ -0.39
TM9SF3-204ENST00000475401 IRF6O14896 467 aa12.58□□□□□ -0.4
TM9SF3-204ENST00000475401 FECHP22830 423 aa12.58□□□□□ -0.4
TM9SF3-204ENST00000475401 TRIM6-TRIM34B2RNG4 842 aa12.57□□□□□ -0.4
TM9SF3-204ENST00000475401 ONECUT3O60422 494 aaPredicted RBP12.56□□□□□ -0.4
TM9SF3-204ENST00000475401 OATP04181 439 aa12.56□□□□□ -0.4
TM9SF3-204ENST00000475401 POTEEQ6S8J3 1075 aa12.56□□□□□ -0.4
TM9SF3-204ENST00000475401 ZBED2Q9BTP6 218 aa12.56□□□□□ -0.4
TM9SF3-204ENST00000475401 NBPF26B4DH59 902 aa12.55□□□□□ -0.4
TM9SF3-204ENST00000475401 POTEGQ6S5H5 508 aa12.55□□□□□ -0.4
TM9SF3-204ENST00000475401 CCDC102AQ96A19 550 aa12.55□□□□□ -0.4
TM9SF3-204ENST00000475401 SLC4A5Q9BY07 1137 aa12.55□□□□□ -0.4
TM9SF3-204ENST00000475401 POTEMA6NI47 508 aa12.54□□□□□ -0.4
TM9SF3-204ENST00000475401 PROX2Q3B8N5 592 aa12.54□□□□□ -0.4
TM9SF3-204ENST00000475401 DMRTA1Q5VZB9 504 aa12.54□□□□□ -0.4
TM9SF3-204ENST00000475401 RBM46Q8TBY0 533 aaKnown RBP12.54□□□□□ -0.4
TM9SF3-204ENST00000475401 LSM11P83369 360 aaKnown RBP eCLIP12.53□□□□□ -0.4
TM9SF3-204ENST00000475401 TTC13Q8NBP0 860 aa12.53□□□□□ -0.4
TM9SF3-204ENST00000475401 TSKSQ9UJT2 592 aa12.53□□□□□ -0.4
TM9SF3-204ENST00000475401 TK2O00142 265 aa12.51□□□□□ -0.41
TM9SF3-204ENST00000475401 STAC3Q96MF2 364 aa12.51□□□□□ -0.41
TM9SF3-204ENST00000475401 KIAA1468Q9P260 1216 aa12.51□□□□□ -0.41
TM9SF3-204ENST00000475401 RABGEF1Q9UJ41 708 aa12.51□□□□□ -0.41
TM9SF3-204ENST00000475401 ADGRG1Q9Y653 693 aa12.51□□□□□ -0.41
TM9SF3-204ENST00000475401 ANKRD13DQ6ZTN6 518 aa12.5□□□□□ -0.41
TM9SF3-204ENST00000475401 NBPF3Q9H094 633 aa12.5□□□□□ -0.41
TM9SF3-204ENST00000475401 PNMA3Q9UL41 463 aa12.5□□□□□ -0.41
TM9SF3-204ENST00000475401 VPS9D1Q9Y2B5 631 aa12.5□□□□□ -0.41
TM9SF3-204ENST00000475401 NUDT18Q6ZVK8 323 aa12.48□□□□□ -0.41
TM9SF3-204ENST00000475401 TATDN2Q93075 761 aa12.48□□□□□ -0.41
TM9SF3-204ENST00000475401 TRIM66O15016 1216 aa12.47□□□□□ -0.41
TM9SF3-204ENST00000475401 FAM161AQ3B820 660 aa12.47□□□□□ -0.41
TM9SF3-204ENST00000475401 ADGRD1Q6QNK2 874 aa12.47□□□□□ -0.41
TM9SF3-204ENST00000475401 METTL3Q86U44 580 aaKnown RBP12.47□□□□□ -0.41
TM9SF3-204ENST00000475401 FAM198AQ9UFP1 575 aa12.47□□□□□ -0.41
TM9SF3-204ENST00000475401 CDAN1Q8IWY9 1227 aa12.46□□□□□ -0.41
TM9SF3-204ENST00000475401 PXYLP1Q8TE99 480 aa12.45□□□□□ -0.42
TM9SF3-204ENST00000475401 HDGFP51858 240 aaKnown RBP12.44□□□□□ -0.42
TM9SF3-204ENST00000475401 TTLL12Q14166 644 aaPredicted RBP12.43□□□□□ -0.42
TM9SF3-204ENST00000475401 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.42□□□□□ -0.42
TM9SF3-204ENST00000475401 NEUROD2Q15784 382 aa12.42□□□□□ -0.42
TM9SF3-204ENST00000475401 MRPL50Q8N5N7 158 aaKnown RBP12.42□□□□□ -0.42
TM9SF3-204ENST00000475401 SMAPO00193 183 aa12.41□□□□□ -0.42
TM9SF3-204ENST00000475401 DNAJB2P25686 324 aa12.41□□□□□ -0.42
TM9SF3-204ENST00000475401 PDE4DQ08499 809 aa12.41□□□□□ -0.42
TM9SF3-204ENST00000475401 AMHR2Q16671 573 aa12.41□□□□□ -0.42
TM9SF3-204ENST00000475401 LAPTM4BQ86VI4 370 aa12.41□□□□□ -0.42
TM9SF3-204ENST00000475401 EYA1Q99502 592 aa12.41□□□□□ -0.42
TM9SF3-204ENST00000475401 GOLGA8CPA6NN73 597 aa12.4□□□□□ -0.42
TM9SF3-204ENST00000475401 CLCN1P35523 988 aa12.4□□□□□ -0.42
TM9SF3-204ENST00000475401 SLC4A3P48751 1232 aa12.4□□□□□ -0.42
TM9SF3-204ENST00000475401 FAM98CQ17RN3 349 aaKnown RBP12.4□□□□□ -0.42
TM9SF3-204ENST00000475401 SEPT9Q9UHD8 586 aaPredicted RBP12.4□□□□□ -0.42
TM9SF3-204ENST00000475401 RCCD1A6NED2 376 aa12.39□□□□□ -0.43
TM9SF3-204ENST00000475401 MDM2Q00987 491 aaPredicted RBP12.38□□□□□ -0.43
TM9SF3-204ENST00000475401 KRTAP3-3Q9BYR6 98 aa12.38□□□□□ -0.43
TM9SF3-204ENST00000475401 KRTAP3-2Q9BYR7 98 aa12.38□□□□□ -0.43
TM9SF3-204ENST00000475401 GPCPD1Q9NPB8 672 aa12.37□□□□□ -0.43
TM9SF3-204ENST00000475401 PCDH10Q9P2E7 1040 aa12.37□□□□□ -0.43
TM9SF3-204ENST00000475401 BHMG1C9JSJ3 638 aaPredicted RBP12.36□□□□□ -0.43
TM9SF3-204ENST00000475401 PHOX2BQ99453 314 aa12.36□□□□□ -0.43
TM9SF3-204ENST00000475401 C3orf80F5H4A9 247 aa12.35□□□□□ -0.43
TM9SF3-204ENST00000475401 HRO43593 1189 aa12.34□□□□□ -0.43
TM9SF3-204ENST00000475401 BRPF1P55201 1214 aaPredicted RBP12.34□□□□□ -0.43
TM9SF3-204ENST00000475401 RSPH4AQ5TD94 716 aa12.33□□□□□ -0.44
TM9SF3-204ENST00000475401 TMEM134Q9H6X4 195 aa12.33□□□□□ -0.44
TM9SF3-204ENST00000475401 DAXXQ9UER7 740 aaPredicted RBP12.33□□□□□ -0.44
TM9SF3-204ENST00000475401 PARP9Q8IXQ6 854 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms