RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 RBM33Q96EV2 1170 aaKnown RBP11.58□□□□□ -0.56
CCDC88A-210ENST00000468534 PPP1R3GB7ZBB8 358 aa11.56□□□□□ -0.56
CCDC88A-210ENST00000468534 PROX2Q3B8N5 592 aa11.56□□□□□ -0.56
CCDC88A-210ENST00000468534 GOLGA8CPA6NN73 597 aa11.55□□□□□ -0.56
CCDC88A-210ENST00000468534 MRPL50Q8N5N7 158 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-210ENST00000468534 EPAS1Q99814 870 aa11.55□□□□□ -0.56
CCDC88A-210ENST00000468534 BHMG1C9JSJ3 638 aaPredicted RBP11.54□□□□□ -0.56
CCDC88A-210ENST00000468534 PTPN5P54829 565 aa11.53□□□□□ -0.56
CCDC88A-210ENST00000468534 NBR1Q14596 966 aa11.53□□□□□ -0.56
CCDC88A-210ENST00000468534 PDIA6Q15084 440 aa11.53□□□□□ -0.56
CCDC88A-210ENST00000468534 C6orf132Q5T0Z8 1188 aa11.52□□□□□ -0.57
CCDC88A-210ENST00000468534 NBPF3Q9H094 633 aa11.52□□□□□ -0.57
CCDC88A-210ENST00000468534 WNT2BQ93097 391 aa11.5□□□□□ -0.57
CCDC88A-210ENST00000468534 TSHZ2Q9NRE2 1034 aa11.5□□□□□ -0.57
CCDC88A-210ENST00000468534 PLA2G2EQ9NZK7 142 aa11.5□□□□□ -0.57
CCDC88A-210ENST00000468534 SPDYE16A6NNV3 312 aaPredicted RBP11.49□□□□□ -0.57
CCDC88A-210ENST00000468534 MAP3K7O43318 606 aa11.48□□□□□ -0.57
CCDC88A-210ENST00000468534 RABGEF1Q9UJ41 708 aa11.48□□□□□ -0.57
CCDC88A-210ENST00000468534 GRXCR2A6NFK2 248 aa11.47□□□□□ -0.57
CCDC88A-210ENST00000468534 TSR1Q2NL82 804 aaKnown RBP11.47□□□□□ -0.57
CCDC88A-210ENST00000468534 EN1Q05925 392 aaPredicted RBP11.46□□□□□ -0.57
CCDC88A-210ENST00000468534 THSD4Q6ZMP0 1018 aa11.46□□□□□ -0.57
CCDC88A-210ENST00000468534 KIAA1468Q9P260 1216 aa11.46□□□□□ -0.57
CCDC88A-210ENST00000468534 SEPT9Q9UHD8 586 aaPredicted RBP11.43□□□□□ -0.58
CCDC88A-210ENST00000468534 ARIH1Q9Y4X5 557 aaPredicted RBP11.42□□□□□ -0.58
CCDC88A-210ENST00000468534 TRIM6-TRIM34B2RNG4 842 aa11.41□□□□□ -0.58
CCDC88A-210ENST00000468534 PRIM1P49642 420 aaKnown RBP11.41□□□□□ -0.58
CCDC88A-210ENST00000468534 ANKK1Q8NFD2 765 aa11.4□□□□□ -0.58
CCDC88A-210ENST00000468534 BCAMP50895 628 aa11.38□□□□□ -0.59
CCDC88A-210ENST00000468534 ZFRQ96KR1 1074 aaKnown RBP11.37□□□□□ -0.59
CCDC88A-210ENST00000468534 ONECUT3O60422 494 aaPredicted RBP11.36□□□□□ -0.59
CCDC88A-210ENST00000468534 LAPTM4BQ86VI4 370 aa11.36□□□□□ -0.59
CCDC88A-210ENST00000468534 TSKSQ9UJT2 592 aa11.36□□□□□ -0.59
CCDC88A-210ENST00000468534 CDHR5Q9HBB8 845 aa11.35□□□□□ -0.59
CCDC88A-210ENST00000468534 OSBPP22059 807 aa11.34□□□□□ -0.59
CCDC88A-210ENST00000468534 KCNV2Q8TDN2 545 aa11.34□□□□□ -0.59
CCDC88A-210ENST00000468534 PACS2Q86VP3 889 aa11.33□□□□□ -0.6
CCDC88A-210ENST00000468534 SOWAHBA6NEL2 793 aa11.32□□□□□ -0.6
CCDC88A-210ENST00000468534 FAM98CQ17RN3 349 aaKnown RBP11.32□□□□□ -0.6
CCDC88A-210ENST00000468534 CDCA7LQ96GN5 454 aa11.32□□□□□ -0.6
CCDC88A-210ENST00000468534 SMAPO00193 183 aa11.3□□□□□ -0.6
CCDC88A-210ENST00000468534 PRSS12P56730 875 aa11.3□□□□□ -0.6
CCDC88A-210ENST00000468534 ARHGEF1Q92888 912 aaKnown RBP11.3□□□□□ -0.6
CCDC88A-210ENST00000468534 CERKQ8TCT0 537 aa11.29□□□□□ -0.6
CCDC88A-210ENST00000468534 FAM198AQ9UFP1 575 aa11.29□□□□□ -0.6
CCDC88A-210ENST00000468534 MLLT3P42568 568 aaPredicted RBP11.28□□□□□ -0.6
CCDC88A-210ENST00000468534 LRCH3Q96II8 777 aa11.28□□□□□ -0.6
CCDC88A-210ENST00000468534 WBP1LQ9NX94 342 aa11.27□□□□□ -0.61
CCDC88A-210ENST00000468534 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.27□□□□□ -0.61
CCDC88A-210ENST00000468534 PNMA3Q9UL41 463 aa11.26□□□□□ -0.61
CCDC88A-210ENST00000468534 C3orf80F5H4A9 247 aa11.25□□□□□ -0.61
CCDC88A-210ENST00000468534 PLCB2Q00722 1185 aa11.25□□□□□ -0.61
CCDC88A-210ENST00000468534 HPS5Q9UPZ3 1129 aa11.25□□□□□ -0.61
CCDC88A-210ENST00000468534 NBPF26B4DH59 902 aa11.24□□□□□ -0.61
CCDC88A-210ENST00000468534 TATDN2Q93075 761 aa11.23□□□□□ -0.61
CCDC88A-210ENST00000468534 TSR3Q9UJK0 312 aaKnown RBP11.23□□□□□ -0.61
CCDC88A-210ENST00000468534 NUDT18Q6ZVK8 323 aa11.22□□□□□ -0.61
CCDC88A-210ENST00000468534 PADI6Q6TGC4 694 aa11.21□□□□□ -0.61
CCDC88A-210ENST00000468534 SAMD7Q7Z3H4 446 aa11.21□□□□□ -0.61
CCDC88A-210ENST00000468534 P3H3Q8IVL6 736 aa11.2□□□□□ -0.62
CCDC88A-210ENST00000468534 NPDC1Q9NQX5 325 aaPredicted RBP11.2□□□□□ -0.62
CCDC88A-210ENST00000468534 RNF40O75150 1001 aa11.19□□□□□ -0.62
CCDC88A-210ENST00000468534 NYAP1Q6ZVC0 841 aa11.19□□□□□ -0.62
CCDC88A-210ENST00000468534 PPP4CP60510 307 aa11.18□□□□□ -0.62
CCDC88A-210ENST00000468534 IFFO2Q5TF58 517 aa11.17□□□□□ -0.62
CCDC88A-210ENST00000468534 RBM27Q9P2N5 1060 aaKnown RBP11.17□□□□□ -0.62
CCDC88A-210ENST00000468534 A0A0G2JS52 829 aa11.16□□□□□ -0.62
CCDC88A-210ENST00000468534 SEMA3EO15041 775 aa11.16□□□□□ -0.62
CCDC88A-210ENST00000468534 HAP1P54257 671 aaPredicted RBP11.16□□□□□ -0.62
CCDC88A-210ENST00000468534 ITGBL1O95965 494 aaPredicted RBP11.15□□□□□ -0.62
CCDC88A-210ENST00000468534 NUTM2FA1L443 756 aa11.14□□□□□ -0.63
CCDC88A-210ENST00000468534 HDGFP51858 240 aaKnown RBP11.13□□□□□ -0.63
CCDC88A-210ENST00000468534 KCNC4Q03721 635 aa11.12□□□□□ -0.63
CCDC88A-210ENST00000468534 TTC13Q8NBP0 860 aa11.12□□□□□ -0.63
CCDC88A-210ENST00000468534 PTGDRQ13258 359 aa11.1□□□□□ -0.63
CCDC88A-210ENST00000468534 SWT1Q5T5J6 900 aaKnown RBP11.09□□□□□ -0.63
CCDC88A-210ENST00000468534 FAM161AQ3B820 660 aa11.06□□□□□ -0.64
CCDC88A-210ENST00000468534 EYA1Q99502 592 aa11.06□□□□□ -0.64
CCDC88A-210ENST00000468534 APLP1P51693 650 aa11.04□□□□□ -0.64
CCDC88A-210ENST00000468534 SLF2Q8IX21 1173 aa11.04□□□□□ -0.64
CCDC88A-210ENST00000468534 RGS20O76081 388 aa11.03□□□□□ -0.64
CCDC88A-210ENST00000468534 MTRQ99707 1265 aa11.03□□□□□ -0.64
CCDC88A-210ENST00000468534 SLC4A3P48751 1232 aa11.02□□□□□ -0.65
CCDC88A-210ENST00000468534 TJAP1Q5JTD0 557 aa11.02□□□□□ -0.65
CCDC88A-210ENST00000468534 RBM26Q5T8P6 1007 aaKnown RBP11.02□□□□□ -0.65
CCDC88A-210ENST00000468534 FCHSD2O94868 740 aa11.01□□□□□ -0.65
CCDC88A-210ENST00000468534 RBM46Q8TBY0 533 aaKnown RBP11.01□□□□□ -0.65
CCDC88A-210ENST00000468534 ADGRG1Q9Y653 693 aa11.01□□□□□ -0.65
CCDC88A-210ENST00000468534 TESPA1A2RU30 521 aaPredicted RBP11□□□□□ -0.65
CCDC88A-210ENST00000468534 KDM2AQ9Y2K7 1162 aa11□□□□□ -0.65
CCDC88A-210ENST00000468534 DNAJB2P25686 324 aa10.99□□□□□ -0.65
CCDC88A-210ENST00000468534 IL21Q9HBE4 155 aa10.99□□□□□ -0.65
CCDC88A-210ENST00000468534 COPS2P61201 443 aa10.98□□□□□ -0.65
CCDC88A-210ENST00000468534 ZNF516Q92618 1163 aa10.98□□□□□ -0.65
CCDC88A-210ENST00000468534 NECTIN2Q92692 538 aa10.98□□□□□ -0.65
CCDC88A-210ENST00000468534 SMYD5Q6GMV2 418 aa10.97□□□□□ -0.65
CCDC88A-210ENST00000468534 RCCD1A6NED2 376 aa10.96□□□□□ -0.65
CCDC88A-210ENST00000468534 IRX2Q9BZI1 471 aaPredicted RBP10.96□□□□□ -0.65
CCDC88A-210ENST00000468534 TMEM134Q9H6X4 195 aa10.94□□□□□ -0.66
CCDC88A-210ENST00000468534 HIC1Q14526 733 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms