RNA–Protein interactions for RNA: ENST00000467114.2

PRPF40A-205, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 546 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-205ENST00000467114 ARIH1Q9Y4X5 557 aaPredicted RBP12.69□□□□□ -0.38
PRPF40A-205ENST00000467114 KCTD12Q96CX2 325 aaKnown RBP12.68□□□□□ -0.38
PRPF40A-205ENST00000467114 WDR70Q9NW82 654 aa12.68□□□□□ -0.38
PRPF40A-205ENST00000467114 SPDYE16A6NNV3 312 aaPredicted RBP12.67□□□□□ -0.38
PRPF40A-205ENST00000467114 COL9A1P20849 921 aa12.67□□□□□ -0.38
PRPF40A-205ENST00000467114 DDX12PQ92771 950 aa12.65□□□□□ -0.38
PRPF40A-205ENST00000467114 C6orf132Q5T0Z8 1188 aa12.64□□□□□ -0.39
PRPF40A-205ENST00000467114 MRPL50Q8N5N7 158 aaKnown RBP12.63□□□□□ -0.39
PRPF40A-205ENST00000467114 NBPF3Q9H094 633 aa12.63□□□□□ -0.39
PRPF40A-205ENST00000467114 RABGEF1Q9UJ41 708 aa12.63□□□□□ -0.39
PRPF40A-205ENST00000467114 PROX2Q3B8N5 592 aa12.62□□□□□ -0.39
PRPF40A-205ENST00000467114 EN1Q05925 392 aaPredicted RBP12.59□□□□□ -0.39
PRPF40A-205ENST00000467114 GOLGA8CPA6NN73 597 aa12.58□□□□□ -0.4
PRPF40A-205ENST00000467114 ONECUT3O60422 494 aaPredicted RBP12.58□□□□□ -0.4
PRPF40A-205ENST00000467114 NBR1Q14596 966 aa12.58□□□□□ -0.4
PRPF40A-205ENST00000467114 THSD4Q6ZMP0 1018 aa12.58□□□□□ -0.4
PRPF40A-205ENST00000467114 RBM33Q96EV2 1170 aaKnown RBP12.58□□□□□ -0.4
PRPF40A-205ENST00000467114 PLA2G2EQ9NZK7 142 aa12.58□□□□□ -0.4
PRPF40A-205ENST00000467114 WNT2BQ93097 391 aa12.57□□□□□ -0.4
PRPF40A-205ENST00000467114 TSHZ2Q9NRE2 1034 aa12.56□□□□□ -0.4
PRPF40A-205ENST00000467114 PTPN5P54829 565 aa12.55□□□□□ -0.4
PRPF40A-205ENST00000467114 LAPTM4BQ86VI4 370 aa12.54□□□□□ -0.4
PRPF40A-205ENST00000467114 KIAA1468Q9P260 1216 aa12.54□□□□□ -0.4
PRPF40A-205ENST00000467114 TRIM6-TRIM34B2RNG4 842 aa12.52□□□□□ -0.41
PRPF40A-205ENST00000467114 MAP3K7O43318 606 aa12.52□□□□□ -0.41
PRPF40A-205ENST00000467114 TSR1Q2NL82 804 aaKnown RBP12.52□□□□□ -0.41
PRPF40A-205ENST00000467114 PRIM1P49642 420 aaKnown RBP12.5□□□□□ -0.41
PRPF40A-205ENST00000467114 GRXCR2A6NFK2 248 aa12.49□□□□□ -0.41
PRPF40A-205ENST00000467114 OSBPP22059 807 aa12.47□□□□□ -0.41
PRPF40A-205ENST00000467114 ANKK1Q8NFD2 765 aa12.47□□□□□ -0.41
PRPF40A-205ENST00000467114 ZFRQ96KR1 1074 aaKnown RBP12.46□□□□□ -0.41
PRPF40A-205ENST00000467114 CERKQ8TCT0 537 aa12.45□□□□□ -0.42
PRPF40A-205ENST00000467114 TSKSQ9UJT2 592 aa12.45□□□□□ -0.42
PRPF40A-205ENST00000467114 FAM98CQ17RN3 349 aaKnown RBP12.44□□□□□ -0.42
PRPF40A-205ENST00000467114 ARHGEF1Q92888 912 aaKnown RBP12.44□□□□□ -0.42
PRPF40A-205ENST00000467114 SEPT9Q9UHD8 586 aaPredicted RBP12.44□□□□□ -0.42
PRPF40A-205ENST00000467114 SOWAHBA6NEL2 793 aa12.43□□□□□ -0.42
PRPF40A-205ENST00000467114 PACS2Q86VP3 889 aa12.43□□□□□ -0.42
PRPF40A-205ENST00000467114 PRSS12P56730 875 aa12.42□□□□□ -0.42
PRPF40A-205ENST00000467114 BCAMP50895 628 aa12.41□□□□□ -0.42
PRPF40A-205ENST00000467114 IFFO2Q5TF58 517 aa12.41□□□□□ -0.42
PRPF40A-205ENST00000467114 KCNV2Q8TDN2 545 aa12.41□□□□□ -0.42
PRPF40A-205ENST00000467114 CDCA7LQ96GN5 454 aa12.41□□□□□ -0.42
PRPF40A-205ENST00000467114 CDHR5Q9HBB8 845 aa12.38□□□□□ -0.43
PRPF40A-205ENST00000467114 FAM198AQ9UFP1 575 aa12.38□□□□□ -0.43
PRPF40A-205ENST00000467114 NYAP1Q6ZVC0 841 aa12.36□□□□□ -0.43
PRPF40A-205ENST00000467114 RBM27Q9P2N5 1060 aaKnown RBP12.36□□□□□ -0.43
PRPF40A-205ENST00000467114 PLCB2Q00722 1185 aa12.34□□□□□ -0.43
PRPF40A-205ENST00000467114 LRCH3Q96II8 777 aa12.33□□□□□ -0.44
PRPF40A-205ENST00000467114 NPDC1Q9NQX5 325 aaPredicted RBP12.33□□□□□ -0.44
PRPF40A-205ENST00000467114 WBP1LQ9NX94 342 aa12.33□□□□□ -0.44
PRPF40A-205ENST00000467114 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.33□□□□□ -0.44
PRPF40A-205ENST00000467114 MLLT3P42568 568 aaPredicted RBP12.32□□□□□ -0.44
PRPF40A-205ENST00000467114 TATDN2Q93075 761 aa12.32□□□□□ -0.44
PRPF40A-205ENST00000467114 NBPF26B4DH59 902 aa12.31□□□□□ -0.44
PRPF40A-205ENST00000467114 C3orf80F5H4A9 247 aa12.31□□□□□ -0.44
PRPF40A-205ENST00000467114 P3H3Q8IVL6 736 aa12.31□□□□□ -0.44
PRPF40A-205ENST00000467114 TSR3Q9UJK0 312 aaKnown RBP12.31□□□□□ -0.44
PRPF40A-205ENST00000467114 SMAPO00193 183 aa12.3□□□□□ -0.44
PRPF40A-205ENST00000467114 ITGBL1O95965 494 aaPredicted RBP12.3□□□□□ -0.44
PRPF40A-205ENST00000467114 TTC13Q8NBP0 860 aa12.3□□□□□ -0.44
PRPF40A-205ENST00000467114 PNMA3Q9UL41 463 aa12.29□□□□□ -0.44
PRPF40A-205ENST00000467114 HPS5Q9UPZ3 1129 aa12.29□□□□□ -0.44
PRPF40A-205ENST00000467114 A0A0G2JS52 829 aa12.26□□□□□ -0.45
PRPF40A-205ENST00000467114 NUDT18Q6ZVK8 323 aa12.26□□□□□ -0.45
PRPF40A-205ENST00000467114 SAMD7Q7Z3H4 446 aa12.26□□□□□ -0.45
PRPF40A-205ENST00000467114 PADI6Q6TGC4 694 aa12.25□□□□□ -0.45
PRPF40A-205ENST00000467114 RGS20O76081 388 aa12.23□□□□□ -0.45
PRPF40A-205ENST00000467114 PPP4CP60510 307 aa12.22□□□□□ -0.45
PRPF40A-205ENST00000467114 PTGDRQ13258 359 aa12.2□□□□□ -0.46
PRPF40A-205ENST00000467114 SEMA3EO15041 775 aa12.19□□□□□ -0.46
PRPF40A-205ENST00000467114 KCNC4Q03721 635 aa12.19□□□□□ -0.46
PRPF40A-205ENST00000467114 HDGFP51858 240 aaKnown RBP12.18□□□□□ -0.46
PRPF40A-205ENST00000467114 EYA1Q99502 592 aa12.17□□□□□ -0.46
PRPF40A-205ENST00000467114 NUTM2FA1L443 756 aa12.13□□□□□ -0.47
PRPF40A-205ENST00000467114 SWT1Q5T5J6 900 aaKnown RBP12.13□□□□□ -0.47
PRPF40A-205ENST00000467114 TJAP1Q5JTD0 557 aa12.11□□□□□ -0.47
PRPF40A-205ENST00000467114 NECTIN2Q92692 538 aa12.11□□□□□ -0.47
PRPF40A-205ENST00000467114 TESPA1A2RU30 521 aaPredicted RBP12.1□□□□□ -0.47
PRPF40A-205ENST00000467114 RNF40O75150 1001 aa12.1□□□□□ -0.47
PRPF40A-205ENST00000467114 HAP1P54257 671 aaPredicted RBP12.1□□□□□ -0.47
PRPF40A-205ENST00000467114 SLF2Q8IX21 1173 aa12.1□□□□□ -0.47
PRPF40A-205ENST00000467114 ADGRG1Q9Y653 693 aa12.09□□□□□ -0.47
PRPF40A-205ENST00000467114 FCHSD2O94868 740 aa12.08□□□□□ -0.48
PRPF40A-205ENST00000467114 APLP1P51693 650 aa12.08□□□□□ -0.48
PRPF40A-205ENST00000467114 RBM46Q8TBY0 533 aaKnown RBP12.07□□□□□ -0.48
PRPF40A-205ENST00000467114 MTRQ99707 1265 aa12.06□□□□□ -0.48
PRPF40A-205ENST00000467114 IL21Q9HBE4 155 aa12.06□□□□□ -0.48
PRPF40A-205ENST00000467114 DNAJB2P25686 324 aa12.05□□□□□ -0.48
PRPF40A-205ENST00000467114 SLC4A3P48751 1232 aa12.05□□□□□ -0.48
PRPF40A-205ENST00000467114 SMYD5Q6GMV2 418 aa12.05□□□□□ -0.48
PRPF40A-205ENST00000467114 KDM2AQ9Y2K7 1162 aa12.05□□□□□ -0.48
PRPF40A-205ENST00000467114 RBM26Q5T8P6 1007 aaKnown RBP12.03□□□□□ -0.48
PRPF40A-205ENST00000467114 TMEM134Q9H6X4 195 aa12.03□□□□□ -0.48
PRPF40A-205ENST00000467114 HIC1Q14526 733 aa12.01□□□□□ -0.49
PRPF40A-205ENST00000467114 FAM161AQ3B820 660 aa12.01□□□□□ -0.49
PRPF40A-205ENST00000467114 RCCD1A6NED2 376 aa12□□□□□ -0.49
PRPF40A-205ENST00000467114 ZNF516Q92618 1163 aa11.99□□□□□ -0.49
PRPF40A-205ENST00000467114 PRR14Q9BWN1 585 aa11.98□□□□□ -0.49
PRPF40A-205ENST00000467114 OATP04181 439 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms