RNA–Protein interactions for RNA: ENST00000444061.7

SMARCA4-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 4,938 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-204ENST00000444061 MINK1Q8N4C8 1332 aaPredicted RBP18.61■□□□□ 0.57
SMARCA4-204ENST00000444061 ST20-MTHFSA0A0A6YYL1 179 aa18.61■□□□□ 0.57
SMARCA4-204ENST00000444061 CSB-PGBD3P0DP91 1061 aa18.61■□□□□ 0.57
SMARCA4-204ENST00000444061 RAPGEF6Q8TEU7 1601 aa18.6■□□□□ 0.57
SMARCA4-204ENST00000444061 ABCA5Q8WWZ7 1642 aa18.6■□□□□ 0.57
SMARCA4-204ENST00000444061 CAMSAP2Q08AD1 1489 aa18.59■□□□□ 0.57
SMARCA4-204ENST00000444061 AKNAQ7Z591 1439 aa18.59■□□□□ 0.57
SMARCA4-204ENST00000444061 EVC2Q86UK5 1308 aa18.59■□□□□ 0.57
SMARCA4-204ENST00000444061 KIAA0556O60303 1618 aa18.59■□□□□ 0.57
SMARCA4-204ENST00000444061 TEX14Q8IWB6 1497 aa18.59■□□□□ 0.57
SMARCA4-204ENST00000444061 MAP3K1Q13233 1512 aa18.58■□□□□ 0.57
SMARCA4-204ENST00000444061 PBRM1Q86U86 1689 aa18.58■□□□□ 0.57
SMARCA4-204ENST00000444061 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.58■□□□□ 0.561e-8■■□□□ 13.7
SMARCA4-204ENST00000444061 WDR7Q9Y4E6 1490 aa18.58■□□□□ 0.56
SMARCA4-204ENST00000444061 NUP153P49790 1475 aaKnown RBP18.57■□□□□ 0.56
SMARCA4-204ENST00000444061 ARXQ96QS3 562 aa18.56■□□□□ 0.56
SMARCA4-204ENST00000444061 KTN1Q86UP2 1357 aaKnown RBP18.56■□□□□ 0.56
SMARCA4-204ENST00000444061 TARBP1Q13395 1621 aaKnown RBP18.56■□□□□ 0.56
SMARCA4-204ENST00000444061 SENP3-EIF4A1A0A087X0R7 540 aa18.56■□□□□ 0.56
SMARCA4-204ENST00000444061 HFM1A2PYH4 1435 aa18.55■□□□□ 0.56
SMARCA4-204ENST00000444061 LAS1LQ9Y4W2 734 aaKnown RBP18.55■□□□□ 0.56
SMARCA4-204ENST00000444061 CTTNBP2Q8WZ74 1663 aa18.54■□□□□ 0.56
SMARCA4-204ENST00000444061 ANKLE2Q86XL3 938 aa18.54■□□□□ 0.56
SMARCA4-204ENST00000444061 THOC2Q8NI27 1593 aaKnown RBP18.54■□□□□ 0.56
SMARCA4-204ENST00000444061 CCDC9Q9Y3X0 531 aaKnown RBP18.54■□□□□ 0.56
SMARCA4-204ENST00000444061 ROCK1Q13464 1354 aa18.53■□□□□ 0.56
SMARCA4-204ENST00000444061 ATF3P18847 181 aa18.53■□□□□ 0.56
SMARCA4-204ENST00000444061 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.53■□□□□ 0.563e-7■■■■□ 26.2
SMARCA4-204ENST00000444061 PLCH2O75038 1416 aa18.53■□□□□ 0.56
SMARCA4-204ENST00000444061 ABCC2Q92887 1545 aa18.52■□□□□ 0.56
SMARCA4-204ENST00000444061 ABCC5O15440 1437 aa18.51■□□□□ 0.55
SMARCA4-204ENST00000444061 TMEM132EQ6IEE7 984 aa18.51■□□□□ 0.55
SMARCA4-204ENST00000444061 CEP170Q5SW79 1584 aa18.51■□□□□ 0.55
SMARCA4-204ENST00000444061 CENPJQ9HC77 1338 aaPredicted RBP18.5■□□□□ 0.55
SMARCA4-204ENST00000444061 KIAA1107Q9UPP5 1409 aa18.5■□□□□ 0.55
SMARCA4-204ENST00000444061 PROSER2Q86WR7 435 aaPredicted RBP18.49■□□□□ 0.55
SMARCA4-204ENST00000444061 GPATCH8Q9UKJ3 1502 aaKnown RBP18.49■□□□□ 0.55
SMARCA4-204ENST00000444061 USP47Q96K76 1375 aa18.49■□□□□ 0.55
SMARCA4-204ENST00000444061 AMPHP49418 695 aa18.48■□□□□ 0.55
SMARCA4-204ENST00000444061 CFAP70Q5T0N1 1121 aa18.48■□□□□ 0.55
SMARCA4-204ENST00000444061 DISP1Q96F81 1524 aa18.47■□□□□ 0.55
SMARCA4-204ENST00000444061 PPP6R1Q9UPN7 881 aa18.47■□□□□ 0.55
SMARCA4-204ENST00000444061 PTPN23Q9H3S7 1636 aa18.46■□□□□ 0.55
SMARCA4-204ENST00000444061 RALBP1Q15311 655 aa18.46■□□□□ 0.55
SMARCA4-204ENST00000444061 U2AF1L5P0DN76 240 aaPredicted RBP18.46■□□□□ 0.55
SMARCA4-204ENST00000444061 U2AF1Q01081 240 aaKnown RBP eCLIP18.46■□□□□ 0.55
SMARCA4-204ENST00000444061 PSME1Q06323 249 aa18.46■□□□□ 0.55
SMARCA4-204ENST00000444061 RTF1Q92541 710 aaKnown RBP18.45■□□□□ 0.54
SMARCA4-204ENST00000444061 CEBPAP49715 358 aaPredicted RBP18.45■□□□□ 0.54
SMARCA4-204ENST00000444061 NAIPQ13075 1403 aa18.44■□□□□ 0.54
SMARCA4-204ENST00000444061 SLC26A8Q96RN1 970 aa18.44■□□□□ 0.54
SMARCA4-204ENST00000444061 DHX29Q7Z478 1369 aaKnown RBP18.43■□□□□ 0.54
SMARCA4-204ENST00000444061 FKBP8Q14318 412 aa18.43■□□□□ 0.54
SMARCA4-204ENST00000444061 COG3Q96JB2 828 aa18.42■□□□□ 0.54
SMARCA4-204ENST00000444061 RPGRIP1LQ68CZ1 1315 aa18.42■□□□□ 0.54
SMARCA4-204ENST00000444061 NCOA1Q15788 1441 aa18.42■□□□□ 0.54
SMARCA4-204ENST00000444061 MYH16Q9H6N6 1097 aa18.42■□□□□ 0.54
SMARCA4-204ENST00000444061 PANK3Q9H999 370 aa18.42■□□□□ 0.54
SMARCA4-204ENST00000444061 LTV1Q96GA3 475 aaPredicted RBP18.41■□□□□ 0.54
SMARCA4-204ENST00000444061 CGNL1Q0VF96 1302 aa18.39■□□□□ 0.54
SMARCA4-204ENST00000444061 FBXO31Q5XUX0 539 aaPredicted RBP18.39■□□□□ 0.54
SMARCA4-204ENST00000444061 ERBINQ96RT1 1412 aa18.38■□□□□ 0.53
SMARCA4-204ENST00000444061 ZNF518AQ6AHZ1 1483 aa18.38■□□□□ 0.53
SMARCA4-204ENST00000444061 ANKRD30BQ9BXX2 1392 aa18.37■□□□□ 0.53
SMARCA4-204ENST00000444061 NPHP1O15259 732 aa18.37■□□□□ 0.53
SMARCA4-204ENST00000444061 PRAM1Q96QH2 718 aa18.35■□□□□ 0.53
SMARCA4-204ENST00000444061 CCER2I3L3R5 266 aa18.35■□□□□ 0.53
SMARCA4-204ENST00000444061 EVA1CP58658 441 aa18.35■□□□□ 0.53
SMARCA4-204ENST00000444061 CCDC136Q96JN2 1154 aa18.34■□□□□ 0.53
SMARCA4-204ENST00000444061 IDI1Q13907 227 aa18.33■□□□□ 0.52
SMARCA4-204ENST00000444061 NLRP13Q86W25 1043 aa18.33■□□□□ 0.52
SMARCA4-204ENST00000444061 CABP2Q9NPB3 220 aa18.33■□□□□ 0.52
SMARCA4-204ENST00000444061 FTSJ3Q8IY81 847 aaKnown RBP18.32■□□□□ 0.52
SMARCA4-204ENST00000444061 TRAPPC8Q9Y2L5 1435 aa18.32■□□□□ 0.52
SMARCA4-204ENST00000444061 ABCC10Q5T3U5 1492 aa18.32■□□□□ 0.52
SMARCA4-204ENST00000444061 ESCO1Q5FWF5 840 aa18.31■□□□□ 0.52
SMARCA4-204ENST00000444061 NBPF1Q3BBV0 1214 aa18.31■□□□□ 0.52
SMARCA4-204ENST00000444061 A2MP01023 1474 aa18.31■□□□□ 0.52
SMARCA4-204ENST00000444061 SYCP2Q9BX26 1530 aa18.31■□□□□ 0.52
SMARCA4-204ENST00000444061 MEX3CQ5U5Q3 659 aaKnown RBP18.31■□□□□ 0.52
SMARCA4-204ENST00000444061 CALD1Q05682 793 aaKnown RBP18.3■□□□□ 0.52
SMARCA4-204ENST00000444061 GPRASP1Q5JY77 1395 aa18.29■□□□□ 0.52
SMARCA4-204ENST00000444061 KDM5BQ9UGL1 1544 aa18.28■□□□□ 0.52
SMARCA4-204ENST00000444061 ITSN2Q9NZM3 1697 aa18.27■□□□□ 0.52
SMARCA4-204ENST00000444061 FRAT1Q92837 279 aaPredicted RBP18.27■□□□□ 0.51
SMARCA4-204ENST00000444061 IRX6P78412 446 aaPredicted RBP18.26■□□□□ 0.51
SMARCA4-204ENST00000444061 TNRQ92752 1358 aa18.26■□□□□ 0.51
SMARCA4-204ENST00000444061 DMRT2Q9Y5R5 561 aa18.25■□□□□ 0.51
SMARCA4-204ENST00000444061 NLRP6P59044 892 aa18.25■□□□□ 0.51
SMARCA4-204ENST00000444061 CHD1O14646 1710 aa18.24■□□□□ 0.51
SMARCA4-204ENST00000444061 PMFBP1Q8TBY8 1022 aa18.24■□□□□ 0.51
SMARCA4-204ENST00000444061 DNAJC5Q9H3Z4 198 aa18.23■□□□□ 0.51
SMARCA4-204ENST00000444061 NUTM2GQ5VZR2 741 aa18.22■□□□□ 0.51
SMARCA4-204ENST00000444061 MS4A1P11836 297 aa18.22■□□□□ 0.51
SMARCA4-204ENST00000444061 NBPF8Q3BBV2 869 aa18.21■□□□□ 0.51
SMARCA4-204ENST00000444061 DUOX2Q9NRD8 1548 aa18.21■□□□□ 0.51
SMARCA4-204ENST00000444061 LMOD3Q0VAK6 560 aa18.21■□□□□ 0.51
SMARCA4-204ENST00000444061 CHMP4AQ9BY43 222 aa18.21■□□□□ 0.51
SMARCA4-204ENST00000444061 MYBBP1AQ9BQG0 1328 aaKnown RBP18.21■□□□□ 0.51
SMARCA4-204ENST00000444061 CDK19Q9BWU1 502 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms