RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 GLI2P10070 1586 aa10.42□□□□□ -0.74
CDC42BPA-208ENST00000442054 MIA2Q96PC5 1412 aa10.42□□□□□ -0.74
CDC42BPA-208ENST00000442054 PROSER2Q86WR7 435 aaPredicted RBP10.42□□□□□ -0.74
CDC42BPA-208ENST00000442054 NCKAP5LQ9HCH0 1330 aa10.41□□□□□ -0.74
CDC42BPA-208ENST00000442054 SYCP2Q9BX26 1530 aa10.41□□□□□ -0.74
CDC42BPA-208ENST00000442054 MAGI2Q86UL8 1455 aa10.41□□□□□ -0.74
CDC42BPA-208ENST00000442054 KIAA1107Q9UPP5 1409 aa10.41□□□□□ -0.74
CDC42BPA-208ENST00000442054 SLC26A8Q96RN1 970 aa10.41□□□□□ -0.74
CDC42BPA-208ENST00000442054 LMOD2Q6P5Q4 547 aa10.41□□□□□ -0.74
CDC42BPA-208ENST00000442054 TIMELESSQ9UNS1 1208 aa10.41□□□□□ -0.74
CDC42BPA-208ENST00000442054 POLR1AO95602 1720 aaPredicted RBP10.4□□□□□ -0.74
CDC42BPA-208ENST00000442054 CAMSAP2Q08AD1 1489 aa10.4□□□□□ -0.74
CDC42BPA-208ENST00000442054 STK26Q9P289 416 aa10.4□□□□□ -0.75
CDC42BPA-208ENST00000442054 ANKRD50Q9ULJ7 1429 aa10.4□□□□□ -0.75
CDC42BPA-208ENST00000442054 TNRQ92752 1358 aa10.39□□□□□ -0.75
CDC42BPA-208ENST00000442054 FOXD1Q16676 465 aa10.39□□□□□ -0.75
CDC42BPA-208ENST00000442054 CNTLNQ9NXG0 1405 aa10.39□□□□□ -0.75
CDC42BPA-208ENST00000442054 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.39□□□□□ -0.75
CDC42BPA-208ENST00000442054 ARAP3Q8WWN8 1544 aa10.39□□□□□ -0.75
CDC42BPA-208ENST00000442054 SLC52A1Q9NWF4 448 aa10.39□□□□□ -0.75
CDC42BPA-208ENST00000442054 POGKQ9P215 609 aa10.38□□□□□ -0.75
CDC42BPA-208ENST00000442054 YTHDC1Q96MU7 727 aaKnown RBP10.38□□□□□ -0.75
CDC42BPA-208ENST00000442054 CFAP74Q9C0B2 1584 aa10.37□□□□□ -0.75
CDC42BPA-208ENST00000442054 TTC37Q6PGP7 1564 aa10.37□□□□□ -0.75
CDC42BPA-208ENST00000442054 TOM1O60784 492 aa10.37□□□□□ -0.75
CDC42BPA-208ENST00000442054 SUPT16HQ9Y5B9 1047 aaKnown RBP10.36□□□□□ -0.75
CDC42BPA-208ENST00000442054 ATF3P18847 181 aa10.36□□□□□ -0.75
CDC42BPA-208ENST00000442054 SAFB2Q14151 953 aaKnown RBP eCLIP10.35□□□□□ -0.756e-6■■■□□ 18.1
CDC42BPA-208ENST00000442054 SIN3AQ96ST3 1273 aa10.35□□□□□ -0.75
CDC42BPA-208ENST00000442054 ABCA9Q8IUA7 1624 aa10.34□□□□□ -0.75
CDC42BPA-208ENST00000442054 IDI1Q13907 227 aa10.34□□□□□ -0.75
CDC42BPA-208ENST00000442054 VGFO15240 615 aaPredicted RBP10.34□□□□□ -0.75
CDC42BPA-208ENST00000442054 DAPK1P53355 1430 aa10.33□□□□□ -0.76
CDC42BPA-208ENST00000442054 PTPRMP28827 1452 aa10.33□□□□□ -0.76
CDC42BPA-208ENST00000442054 NUTM2FA1L443 756 aa10.33□□□□□ -0.76
CDC42BPA-208ENST00000442054 MPHOSPH9Q99550 1183 aa10.33□□□□□ -0.76
CDC42BPA-208ENST00000442054 DNMT1P26358 1616 aaKnown RBP10.32□□□□□ -0.76
CDC42BPA-208ENST00000442054 CROCC2H7BZ55 1655 aa10.32□□□□□ -0.76
CDC42BPA-208ENST00000442054 RBM33Q96EV2 1170 aaKnown RBP10.32□□□□□ -0.76
CDC42BPA-208ENST00000442054 MLH3Q9UHC1 1453 aa10.32□□□□□ -0.76
CDC42BPA-208ENST00000442054 MYO5CQ9NQX4 1742 aa10.32□□□□□ -0.76
CDC42BPA-208ENST00000442054 MEX3CQ5U5Q3 659 aaKnown RBP10.31□□□□□ -0.76
CDC42BPA-208ENST00000442054 FAM135AQ9P2D6 1515 aa10.31□□□□□ -0.76
CDC42BPA-208ENST00000442054 LMTK3Q96Q04 1460 aa10.31□□□□□ -0.76
CDC42BPA-208ENST00000442054 RTEL1-TNFRSF6BF6WH68 1400 aa10.31□□□□□ -0.76
CDC42BPA-208ENST00000442054 ABCC5O15440 1437 aa10.31□□□□□ -0.76
CDC42BPA-208ENST00000442054 A0A0G2JS52 829 aa10.3□□□□□ -0.76
CDC42BPA-208ENST00000442054 DCAF11Q8TEB1 546 aa10.3□□□□□ -0.76
CDC42BPA-208ENST00000442054 ATP7AQ04656 1500 aa10.3□□□□□ -0.76
CDC42BPA-208ENST00000442054 KIF13AQ9H1H9 1805 aa10.29□□□□□ -0.76
CDC42BPA-208ENST00000442054 CERKQ8TCT0 537 aa10.29□□□□□ -0.76
CDC42BPA-208ENST00000442054 ZBTB7CA1YPR0 619 aa10.29□□□□□ -0.76
CDC42BPA-208ENST00000442054 MAP3K4Q9Y6R4 1608 aa10.27□□□□□ -0.76
CDC42BPA-208ENST00000442054 ADGBQ8N7X0 1667 aa10.27□□□□□ -0.77
CDC42BPA-208ENST00000442054 CNGB1Q14028 1251 aaPredicted RBP10.26□□□□□ -0.77
CDC42BPA-208ENST00000442054 ITSN2Q9NZM3 1697 aa10.26□□□□□ -0.77
CDC42BPA-208ENST00000442054 NCOA1Q15788 1441 aa10.26□□□□□ -0.77
CDC42BPA-208ENST00000442054 MBD5Q9P267 1494 aa10.26□□□□□ -0.77
CDC42BPA-208ENST00000442054 ARHGEF12Q9NZN5 1544 aa10.26□□□□□ -0.77
CDC42BPA-208ENST00000442054 ABCC1P33527 1531 aa10.25□□□□□ -0.77
CDC42BPA-208ENST00000442054 HECW2Q9P2P5 1572 aa10.25□□□□□ -0.77
CDC42BPA-208ENST00000442054 CCDC144AA2RUR9 1427 aa10.25□□□□□ -0.77
CDC42BPA-208ENST00000442054 SPATA31E1Q6ZUB1 1445 aa10.25□□□□□ -0.77
CDC42BPA-208ENST00000442054 TONSLQ96HA7 1378 aa10.25□□□□□ -0.77
CDC42BPA-208ENST00000442054 ZNF335Q9H4Z2 1342 aaPredicted RBP10.25□□□□□ -0.77
CDC42BPA-208ENST00000442054 CCER2I3L3R5 266 aa10.25□□□□□ -0.77
CDC42BPA-208ENST00000442054 ROCK1Q13464 1354 aa10.23□□□□□ -0.77
CDC42BPA-208ENST00000442054 NUTM2BA6NNL0 878 aaPredicted RBP10.23□□□□□ -0.77
CDC42BPA-208ENST00000442054 NUTM2EB1AL46 878 aaPredicted RBP10.23□□□□□ -0.77
CDC42BPA-208ENST00000442054 NUTM2AQ8IVF1 878 aaPredicted RBP10.23□□□□□ -0.77
CDC42BPA-208ENST00000442054 CCDC9Q9Y3X0 531 aaKnown RBP10.23□□□□□ -0.77
CDC42BPA-208ENST00000442054 PAK3O75914 559 aaPredicted RBP10.23□□□□□ -0.77
CDC42BPA-208ENST00000442054 SAMD9LQ8IVG5 1584 aa10.23□□□□□ -0.77
CDC42BPA-208ENST00000442054 CDC42BPAQ5VT25 1732 aa10.22□□□□□ -0.77
CDC42BPA-208ENST00000442054 TSHZ2Q9NRE2 1034 aa10.22□□□□□ -0.77
CDC42BPA-208ENST00000442054 DUOX2Q9NRD8 1548 aa10.21□□□□□ -0.77
CDC42BPA-208ENST00000442054 RPRD2Q5VT52 1461 aaKnown RBP10.21□□□□□ -0.77
CDC42BPA-208ENST00000442054 TRAK1Q9UPV9 953 aa10.21□□□□□ -0.77
CDC42BPA-208ENST00000442054 AMOTL2Q9Y2J4 779 aa10.21□□□□□ -0.77
CDC42BPA-208ENST00000442054 ILDR1Q86SU0 546 aaPredicted RBP10.21□□□□□ -0.78
CDC42BPA-208ENST00000442054 ARHGEF40Q8TER5 1519 aa10.21□□□□□ -0.78
CDC42BPA-208ENST00000442054 ADGRL2O95490 1459 aa10.2□□□□□ -0.78
CDC42BPA-208ENST00000442054 PZPP20742 1482 aa10.2□□□□□ -0.78
CDC42BPA-208ENST00000442054 PREX2Q70Z35 1606 aa10.2□□□□□ -0.78
CDC42BPA-208ENST00000442054 SRPK2P78362 688 aaKnown RBP10.2□□□□□ -0.78
CDC42BPA-208ENST00000442054 TMC1Q8TDI8 760 aa10.2□□□□□ -0.78
CDC42BPA-208ENST00000442054 FBXO41Q8TF61 875 aa10.2□□□□□ -0.78
CDC42BPA-208ENST00000442054 BCORL1Q5H9F3 1711 aa10.2□□□□□ -0.78
CDC42BPA-208ENST00000442054 NGDNQ8NEJ9 315 aaKnown RBP10.2□□□□□ -0.78
CDC42BPA-208ENST00000442054 ANKRD30BQ9BXX2 1392 aa10.19□□□□□ -0.78
CDC42BPA-208ENST00000442054 ERBINQ96RT1 1412 aa10.19□□□□□ -0.78
CDC42BPA-208ENST00000442054 TMEM132EQ6IEE7 984 aa10.19□□□□□ -0.78
CDC42BPA-208ENST00000442054 DDX10Q13206 875 aaKnown RBP10.19□□□□□ -0.78
CDC42BPA-208ENST00000442054 MSH6P52701 1360 aa10.18□□□□□ -0.78
CDC42BPA-208ENST00000442054 CADPS2Q86UW7 1296 aa10.18□□□□□ -0.78
CDC42BPA-208ENST00000442054 ESCO1Q5FWF5 840 aa10.18□□□□□ -0.78
CDC42BPA-208ENST00000442054 LTKP29376 864 aa10.18□□□□□ -0.78
CDC42BPA-208ENST00000442054 RIMS1Q86UR5 1692 aaKnown RBP10.18□□□□□ -0.78
CDC42BPA-208ENST00000442054 WASHC2AQ641Q2 1341 aa10.17□□□□□ -0.78
CDC42BPA-208ENST00000442054 KDM5DQ9BY66 1539 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms