RNA–Protein interactions for RNA: ENST00000440653.1

HDAC6-209, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 658 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-209ENST00000440653 ZNF142P52746 1687 aaPredicted RBP13.44□□□□□ -0.26
HDAC6-209ENST00000440653 CEP170BQ9Y4F5 1589 aaPredicted RBP13.43□□□□□ -0.26
HDAC6-209ENST00000440653 DNMT1P26358 1616 aaKnown RBP13.42□□□□□ -0.26
HDAC6-209ENST00000440653 ZNF518AQ6AHZ1 1483 aa13.42□□□□□ -0.26
HDAC6-209ENST00000440653 KDM5CP41229 1560 aa13.42□□□□□ -0.26
HDAC6-209ENST00000440653 EFCAB2Q5VUJ9 269 aa13.42□□□□□ -0.26
HDAC6-209ENST00000440653 ADGBQ8N7X0 1667 aa13.42□□□□□ -0.26
HDAC6-209ENST00000440653 KIF14Q15058 1648 aa13.41□□□□□ -0.26
HDAC6-209ENST00000440653 CROCC2H7BZ55 1655 aa13.4□□□□□ -0.26
HDAC6-209ENST00000440653 VWDEQ8N2E2 1590 aa13.4□□□□□ -0.26
HDAC6-209ENST00000440653 FAM50AQ14320 339 aaKnown RBP13.39□□□□□ -0.27
HDAC6-209ENST00000440653 NEURL4Q96JN8 1562 aa13.39□□□□□ -0.27
HDAC6-209ENST00000440653 MROH2AA6NES4 1674 aa13.39□□□□□ -0.27
HDAC6-209ENST00000440653 TROQ12816 1431 aaPredicted RBP13.39□□□□□ -0.27
HDAC6-209ENST00000440653 ACIN1Q9UKV3 1341 aaKnown RBP13.39□□□□□ -0.27
HDAC6-209ENST00000440653 CDK11AQ9UQ88 783 aaPredicted RBP13.36□□□□□ -0.27
HDAC6-209ENST00000440653 MLH3Q9UHC1 1453 aa13.36□□□□□ -0.27
HDAC6-209ENST00000440653 LRRC7Q96NW7 1537 aa13.34□□□□□ -0.27
HDAC6-209ENST00000440653 POLR1AO95602 1720 aaPredicted RBP13.34□□□□□ -0.27
HDAC6-209ENST00000440653 STRCP1A6NGW2 1772 aa13.34□□□□□ -0.27
HDAC6-209ENST00000440653 CLTCQ00610 1675 aaKnown RBP13.34□□□□□ -0.27
HDAC6-209ENST00000440653 MYO5CQ9NQX4 1742 aa13.33□□□□□ -0.27
HDAC6-209ENST00000440653 NAIPQ13075 1403 aa13.33□□□□□ -0.28
HDAC6-209ENST00000440653 ZNF316A6NFI3 1004 aaPredicted RBP13.33□□□□□ -0.28
HDAC6-209ENST00000440653 CDC42BPAQ5VT25 1732 aa13.33□□□□□ -0.28
HDAC6-209ENST00000440653 A2ML1A8K2U0 1454 aa13.32□□□□□ -0.28
HDAC6-209ENST00000440653 ITGAEP38570 1179 aa13.32□□□□□ -0.28
HDAC6-209ENST00000440653 TRIM52Q96A61 297 aa13.32□□□□□ -0.28
HDAC6-209ENST00000440653 ROCK1Q13464 1354 aa13.32□□□□□ -0.28
HDAC6-209ENST00000440653 RNF17Q9BXT8 1623 aaKnown RBP13.31□□□□□ -0.28
HDAC6-209ENST00000440653 KIDINS220Q9ULH0 1771 aa13.3□□□□□ -0.28
HDAC6-209ENST00000440653 CAMSAP2Q08AD1 1489 aa13.29□□□□□ -0.28
HDAC6-209ENST00000440653 ARHGAP5Q13017 1502 aa13.29□□□□□ -0.28
HDAC6-209ENST00000440653 PREX2Q70Z35 1606 aa13.29□□□□□ -0.28
HDAC6-209ENST00000440653 TIMELESSQ9UNS1 1208 aa13.29□□□□□ -0.28
HDAC6-209ENST00000440653 DAPK1P53355 1430 aa13.29□□□□□ -0.28
HDAC6-209ENST00000440653 DIEXFQ68CQ4 756 aaKnown RBP13.27□□□□□ -0.29
HDAC6-209ENST00000440653 ANKLE2Q86XL3 938 aa13.27□□□□□ -0.29
HDAC6-209ENST00000440653 ADGRL2O95490 1459 aa13.27□□□□□ -0.29
HDAC6-209ENST00000440653 NPHP4O75161 1426 aaPredicted RBP13.26□□□□□ -0.29
HDAC6-209ENST00000440653 ARHGEF5Q12774 1597 aa13.25□□□□□ -0.29
HDAC6-209ENST00000440653 GGT6Q6P531 493 aa13.24□□□□□ -0.29
HDAC6-209ENST00000440653 GPATCH8Q9UKJ3 1502 aaKnown RBP13.23□□□□□ -0.29
HDAC6-209ENST00000440653 FBXO31Q5XUX0 539 aaPredicted RBP13.23□□□□□ -0.29
HDAC6-209ENST00000440653 FAM135BQ49AJ0 1406 aa13.22□□□□□ -0.29
HDAC6-209ENST00000440653 MED14O60244 1454 aa13.22□□□□□ -0.29
HDAC6-209ENST00000440653 CDC42BPBQ9Y5S2 1711 aa13.21□□□□□ -0.3
HDAC6-209ENST00000440653 ABCC5O15440 1437 aa13.21□□□□□ -0.3
HDAC6-209ENST00000440653 SYNMO15061 1565 aa13.2□□□□□ -0.3
HDAC6-209ENST00000440653 ABCC1P33527 1531 aa13.2□□□□□ -0.3
HDAC6-209ENST00000440653 XIRP1Q702N8 1843 aaKnown RBP13.2□□□□□ -0.3
HDAC6-209ENST00000440653 IQGAP1P46940 1657 aa13.19□□□□□ -0.3
HDAC6-209ENST00000440653 MAST1Q9Y2H9 1570 aa13.18□□□□□ -0.3
HDAC6-209ENST00000440653 TNRQ92752 1358 aa13.18□□□□□ -0.3
HDAC6-209ENST00000440653 DEPDC5O75140 1603 aa13.17□□□□□ -0.3
HDAC6-209ENST00000440653 THEMISQ8N1K5 641 aaPredicted RBP13.17□□□□□ -0.3
HDAC6-209ENST00000440653 SETBP1Q9Y6X0 1596 aa13.16□□□□□ -0.3
HDAC6-209ENST00000440653 ROBO1Q9Y6N7 1651 aa13.16□□□□□ -0.3
HDAC6-209ENST00000440653 KDM5DQ9BY66 1539 aa13.16□□□□□ -0.3
HDAC6-209ENST00000440653 SAMD9LQ8IVG5 1584 aa13.15□□□□□ -0.3
HDAC6-209ENST00000440653 RXRBP28702 533 aa13.15□□□□□ -0.3
HDAC6-209ENST00000440653 TONSLQ96HA7 1378 aa13.15□□□□□ -0.3
HDAC6-209ENST00000440653 PLEKHH2Q8IVE3 1493 aa13.15□□□□□ -0.3
HDAC6-209ENST00000440653 PLXNC1O60486 1568 aa13.15□□□□□ -0.3
HDAC6-209ENST00000440653 LRP6O75581 1613 aa13.14□□□□□ -0.31
HDAC6-209ENST00000440653 ZNF772Q68DY9 489 aaPredicted RBP13.14□□□□□ -0.31
HDAC6-209ENST00000440653 CCDC141Q6ZP82 1450 aa13.13□□□□□ -0.31
HDAC6-209ENST00000440653 SPAG9O60271 1321 aaKnown RBP13.13□□□□□ -0.31
HDAC6-209ENST00000440653 A2MP01023 1474 aa13.12□□□□□ -0.31
HDAC6-209ENST00000440653 ANKRD30AQ9BXX3 1397 aa13.12□□□□□ -0.31
HDAC6-209ENST00000440653 JCADQ9P266 1359 aa13.12□□□□□ -0.31
HDAC6-209ENST00000440653 CFDP1Q9UEE9 299 aaPredicted RBP13.12□□□□□ -0.31
HDAC6-209ENST00000440653 UGGT1Q9NYU2 1555 aa13.11□□□□□ -0.31
HDAC6-209ENST00000440653 MEX3CQ5U5Q3 659 aaKnown RBP13.11□□□□□ -0.31
HDAC6-209ENST00000440653 ZRANB1Q9UGI0 708 aa13.11□□□□□ -0.31
HDAC6-209ENST00000440653 FAM135AQ9P2D6 1515 aa13.1□□□□□ -0.31
HDAC6-209ENST00000440653 ZC3H13Q5T200 1668 aaKnown RBP13.1□□□□□ -0.31
HDAC6-209ENST00000440653 HNRNPMP52272 730 aaKnown RBP eCLIP13.1□□□□□ -0.31
HDAC6-209ENST00000440653 PHLPP1O60346 1717 aa13.09□□□□□ -0.31
HDAC6-209ENST00000440653 RBM33Q96EV2 1170 aaKnown RBP13.09□□□□□ -0.31
HDAC6-209ENST00000440653 UNC13BO14795 1591 aa13.08□□□□□ -0.32
HDAC6-209ENST00000440653 ZNF777Q9ULD5 760 aaPredicted RBP13.08□□□□□ -0.32
HDAC6-209ENST00000440653 RPRD2Q5VT52 1461 aaKnown RBP13.08□□□□□ -0.32
HDAC6-209ENST00000440653 CDK12Q9NYV4 1490 aaPredicted RBP13.08□□□□□ -0.32
HDAC6-209ENST00000440653 CENPBP07199 599 aaPredicted RBP13.07□□□□□ -0.32
HDAC6-209ENST00000440653 ATP7AQ04656 1500 aa13.07□□□□□ -0.32
HDAC6-209ENST00000440653 SYCP2Q9BX26 1530 aa13.07□□□□□ -0.32
HDAC6-209ENST00000440653 PZPP20742 1482 aa13.06□□□□□ -0.32
HDAC6-209ENST00000440653 RRP7BPQ9NSQ0 103 aa13.06□□□□□ -0.32
HDAC6-209ENST00000440653 TMEM94Q12767 1356 aa13.06□□□□□ -0.32
HDAC6-209ENST00000440653 KIAA1107Q9UPP5 1409 aa13.05□□□□□ -0.32
HDAC6-209ENST00000440653 MBD5Q9P267 1494 aa13.05□□□□□ -0.32
HDAC6-209ENST00000440653 NUTM2BA6NNL0 878 aaPredicted RBP13.05□□□□□ -0.32
HDAC6-209ENST00000440653 NUTM2EB1AL46 878 aaPredicted RBP13.05□□□□□ -0.32
HDAC6-209ENST00000440653 NUTM2DQ5VT03 806 aaPredicted RBP13.05□□□□□ -0.32
HDAC6-209ENST00000440653 NUTM2AQ8IVF1 878 aaPredicted RBP13.05□□□□□ -0.32
HDAC6-209ENST00000440653 RGS12O14924 1447 aa13.05□□□□□ -0.32
HDAC6-209ENST00000440653 ANKRD50Q9ULJ7 1429 aa13.05□□□□□ -0.32
HDAC6-209ENST00000440653 NLRP1Q9C000 1473 aa13.04□□□□□ -0.32
HDAC6-209ENST00000440653 RSPH4AQ5TD94 716 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms