RNA–Protein interactions for RNA: ENST00000439886.5

SMPD4-209, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 3,371 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-209ENST00000439886 C8orf34Q49A92 452 aa15.03■□□□□ -0
SMPD4-209ENST00000439886 RRAGDQ9NQL2 400 aaPredicted RBP15.03■□□□□ -0
SMPD4-209ENST00000439886 SPATA31E1Q6ZUB1 1445 aa15.02■□□□□ -0
SMPD4-209ENST00000439886 L1TD1Q5T7N2 865 aaKnown RBP15.02■□□□□ -0
SMPD4-209ENST00000439886 BBXQ8WY36 941 aaPredicted RBP15.01□□□□□ -0.01
SMPD4-209ENST00000439886 NBPF1Q3BBV0 1214 aa15.01□□□□□ -0.01
SMPD4-209ENST00000439886 CHMP4BQ9H444 224 aaKnown RBP15.01□□□□□ -0.01
SMPD4-209ENST00000439886 GOLGA2Q08379 1002 aa15.01□□□□□ -0.01
SMPD4-209ENST00000439886 GOLGA6L3A6NEY3 463 aa15□□□□□ -0.01
SMPD4-209ENST00000439886 BCAR3O75815 825 aa15□□□□□ -0.01
SMPD4-209ENST00000439886 KNSTRNQ9Y448 316 aa14.99□□□□□ -0.01
SMPD4-209ENST00000439886 SUPT6HQ7KZ85 1726 aaKnown RBP14.99□□□□□ -0.01
SMPD4-209ENST00000439886 FBLN2P98095 1184 aa14.99□□□□□ -0.01
SMPD4-209ENST00000439886 COG6Q9Y2V7 657 aa14.99□□□□□ -0.01
SMPD4-209ENST00000439886 EFCAB5A4FU69 1503 aa14.99□□□□□ -0.01
SMPD4-209ENST00000439886 NAP1L2Q9ULW6 460 aaPredicted RBP14.98□□□□□ -0.01
SMPD4-209ENST00000439886 MIA2Q96PC5 1412 aa14.98□□□□□ -0.01
SMPD4-209ENST00000439886 SEC24BO95487 1268 aa14.98□□□□□ -0.01
SMPD4-209ENST00000439886 TSPY4P0CV99 314 aa14.97□□□□□ -0.01
SMPD4-209ENST00000439886 TSPY10P0CW01 314 aa14.97□□□□□ -0.01
SMPD4-209ENST00000439886 CLUAP1Q96AJ1 413 aa14.97□□□□□ -0.01
SMPD4-209ENST00000439886 ARID3AQ99856 593 aa14.97□□□□□ -0.01
SMPD4-209ENST00000439886 PANK2Q9BZ23 570 aa14.97□□□□□ -0.01
SMPD4-209ENST00000439886 CDK13Q14004 1512 aaKnown RBP14.96□□□□□ -0.01
SMPD4-209ENST00000439886 SNAPC4Q5SXM2 1469 aa14.96□□□□□ -0.01
SMPD4-209ENST00000439886 TRIM44Q96DX7 344 aaPredicted RBP14.96□□□□□ -0.01
SMPD4-209ENST00000439886 PANK1Q8TE04 598 aa14.96□□□□□ -0.02
SMPD4-209ENST00000439886 BCL2L13Q9BXK5 485 aa14.96□□□□□ -0.02
SMPD4-209ENST00000439886 FANCD2Q9BXW9 1451 aa14.96□□□□□ -0.02
SMPD4-209ENST00000439886 LRPPRCP42704 1394 aaKnown RBP14.95□□□□□ -0.02
SMPD4-209ENST00000439886 TEX14Q8IWB6 1497 aa14.95□□□□□ -0.02
SMPD4-209ENST00000439886 TNNT2P45379 298 aaPredicted RBP14.95□□□□□ -0.02
SMPD4-209ENST00000439886 APAF1O14727 1248 aa14.95□□□□□ -0.02
SMPD4-209ENST00000439886 EHBP1L1Q8N3D4 1523 aa14.95□□□□□ -0.02
SMPD4-209ENST00000439886 DAPK1P53355 1430 aa14.93□□□□□ -0.02
SMPD4-209ENST00000439886 IGHDP01880 384 aa14.93□□□□□ -0.02
SMPD4-209ENST00000439886 MFAP1P55081 439 aaKnown RBP14.92□□□□□ -0.02
SMPD4-209ENST00000439886 DHX37Q8IY37 1157 aaKnown RBP14.92□□□□□ -0.02
SMPD4-209ENST00000439886 TMF1P82094 1093 aa14.91□□□□□ -0.02
SMPD4-209ENST00000439886 FOXD4L1Q9NU39 408 aa14.91□□□□□ -0.02
SMPD4-209ENST00000439886 ABCC5O15440 1437 aa14.9□□□□□ -0.02
SMPD4-209ENST00000439886 PDS5BQ9NTI5 1447 aa14.9□□□□□ -0.02
SMPD4-209ENST00000439886 RRP7AQ9Y3A4 280 aaKnown RBP14.9□□□□□ -0.02
SMPD4-209ENST00000439886 KDM2BQ8NHM5 1336 aa14.9□□□□□ -0.02
SMPD4-209ENST00000439886 DUSP27Q5VZP5 1158 aa14.9□□□□□ -0.02
SMPD4-209ENST00000439886 UGGT2Q9NYU1 1516 aa14.9□□□□□ -0.02
SMPD4-209ENST00000439886 POLA1P09884 1462 aaPredicted RBP14.89□□□□□ -0.03
SMPD4-209ENST00000439886 LAMC3Q9Y6N6 1575 aa14.89□□□□□ -0.03
SMPD4-209ENST00000439886 MAGI3Q5TCQ9 1506 aa14.89□□□□□ -0.03
SMPD4-209ENST00000439886 XRCC6P12956 609 aaKnown RBP eCLIP14.89□□□□□ -0.03
SMPD4-209ENST00000439886 MYH16Q9H6N6 1097 aa14.89□□□□□ -0.03
SMPD4-209ENST00000439886 HECW1Q76N89 1606 aa14.89□□□□□ -0.03
SMPD4-209ENST00000439886 BCORL1Q5H9F3 1711 aa14.89□□□□□ -0.03
SMPD4-209ENST00000439886 KIAA1107Q9UPP5 1409 aa14.89□□□□□ -0.03
SMPD4-209ENST00000439886 GRIN2BQ13224 1484 aa14.88□□□□□ -0.03
SMPD4-209ENST00000439886 HNRNPMP52272 730 aaKnown RBP eCLIP14.88□□□□□ -0.031e-6■■■■□ 22.6
SMPD4-209ENST00000439886 ERCC6Q03468 1493 aa14.87□□□□□ -0.03
SMPD4-209ENST00000439886 NCBP3Q53F19 620 aaKnown RBP14.86□□□□□ -0.03
SMPD4-209ENST00000439886 ZBTB7CA1YPR0 619 aa14.86□□□□□ -0.03
SMPD4-209ENST00000439886 ANKRD30AQ9BXX3 1397 aa14.85□□□□□ -0.03
SMPD4-209ENST00000439886 SPINK5Q9NQ38 1064 aaPredicted RBP14.85□□□□□ -0.03
SMPD4-209ENST00000439886 TRAK2O60296 914 aa14.85□□□□□ -0.03
SMPD4-209ENST00000439886 EPRSP07814 1512 aaKnown RBP14.84□□□□□ -0.03
SMPD4-209ENST00000439886 PPP2R1AP30153 589 aa14.84□□□□□ -0.03
SMPD4-209ENST00000439886 AMER1Q5JTC6 1135 aaPredicted RBP14.84□□□□□ -0.03
SMPD4-209ENST00000439886 TBC1D2Q9BYX2 928 aa14.84□□□□□ -0.03
SMPD4-209ENST00000439886 PER1O15534 1290 aaPredicted RBP14.84□□□□□ -0.03
SMPD4-209ENST00000439886 PLEKHH1Q9ULM0 1364 aa14.84□□□□□ -0.03
SMPD4-209ENST00000439886 CENPJQ9HC77 1338 aaPredicted RBP14.83□□□□□ -0.04
SMPD4-209ENST00000439886 NCLP19338 710 aaKnown RBP14.83□□□□□ -0.04
SMPD4-209ENST00000439886 MCM4P33991 863 aa14.82□□□□□ -0.04
SMPD4-209ENST00000439886 GAPVD1Q14C86 1478 aa14.82□□□□□ -0.04
SMPD4-209ENST00000439886 ANKRD50Q9ULJ7 1429 aa14.82□□□□□ -0.04
SMPD4-209ENST00000439886 PARD3Q8TEW0 1356 aa14.81□□□□□ -0.04
SMPD4-209ENST00000439886 SLFN5Q08AF3 891 aa14.81□□□□□ -0.04
SMPD4-209ENST00000439886 HSCBQ8IWL3 235 aa14.81□□□□□ -0.04
SMPD4-209ENST00000439886 THOC2Q8NI27 1593 aaKnown RBP14.8□□□□□ -0.04
SMPD4-209ENST00000439886 TOPBP1Q92547 1522 aa14.8□□□□□ -0.04
SMPD4-209ENST00000439886 MAPK8IP3Q9UPT6 1336 aa14.8□□□□□ -0.04
SMPD4-209ENST00000439886 PLCD3Q8N3E9 789 aa14.8□□□□□ -0.04
SMPD4-209ENST00000439886 ANP32BQ92688 251 aaKnown RBP14.8□□□□□ -0.04
SMPD4-209ENST00000439886 SENP3Q9H4L4 574 aaPredicted RBP14.8□□□□□ -0.04
SMPD4-209ENST00000439886 PDZRN3Q9UPQ7 1066 aa14.8□□□□□ -0.04
SMPD4-209ENST00000439886 ROCK1Q13464 1354 aa14.8□□□□□ -0.04
SMPD4-209ENST00000439886 DISP3Q9P2K9 1392 aa14.8□□□□□ -0.04
SMPD4-209ENST00000439886 ABCA10Q8WWZ4 1543 aa14.79□□□□□ -0.04
SMPD4-209ENST00000439886 PLEKHD1A6NEE1 506 aa14.79□□□□□ -0.04
SMPD4-209ENST00000439886 TNNQ9UQP3 1299 aa14.79□□□□□ -0.04
SMPD4-209ENST00000439886 HSP90AB1P08238 724 aaKnown RBP14.79□□□□□ -0.04
SMPD4-209ENST00000439886 FTSJ3Q8IY81 847 aaKnown RBP14.79□□□□□ -0.04
SMPD4-209ENST00000439886 TCOF1Q13428 1488 aaKnown RBP14.79□□□□□ -0.04
SMPD4-209ENST00000439886 PZPP20742 1482 aa14.79□□□□□ -0.04
SMPD4-209ENST00000439886 PRG4Q92954 1404 aaPredicted RBP14.78□□□□□ -0.04
SMPD4-209ENST00000439886 KIF21AQ7Z4S6 1674 aa14.77□□□□□ -0.04
SMPD4-209ENST00000439886 GCC2Q8IWJ2 1684 aa14.77□□□□□ -0.04
SMPD4-209ENST00000439886 CGNL1Q0VF96 1302 aa14.77□□□□□ -0.04
SMPD4-209ENST00000439886 ESPNB1AK53 854 aa14.77□□□□□ -0.04
SMPD4-209ENST00000439886 DMRT2Q9Y5R5 561 aa14.77□□□□□ -0.04
SMPD4-209ENST00000439886 GRPEL1Q9HAV7 217 aa14.76□□□□□ -0.05
SMPD4-209ENST00000439886 CHMP5Q9NZZ3 219 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms