RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 CHMP4AQ9BY43 222 aa19.2■□□□□ 0.66
PTPRF-206ENST00000429895 CCDC34Q96HJ3 373 aa19.19■□□□□ 0.66
PTPRF-206ENST00000429895 RRP7AQ9Y3A4 280 aaKnown RBP19.19■□□□□ 0.66
PTPRF-206ENST00000429895 TRAK1Q9UPV9 953 aa19.17■□□□□ 0.66
PTPRF-206ENST00000429895 HDAC5Q9UQL6 1122 aa19.17■□□□□ 0.66
PTPRF-206ENST00000429895 ANKRD30AQ9BXX3 1397 aa19.17■□□□□ 0.66
PTPRF-206ENST00000429895 WWC1Q8IX03 1113 aa19.17■□□□□ 0.66
PTPRF-206ENST00000429895 PES1O00541 588 aaKnown RBP19.17■□□□□ 0.66
PTPRF-206ENST00000429895 TIMELESSQ9UNS1 1208 aa19.17■□□□□ 0.66
PTPRF-206ENST00000429895 RAD21O60216 631 aa19.16■□□□□ 0.66
PTPRF-206ENST00000429895 NGEFQ8N5V2 710 aa19.16■□□□□ 0.66
PTPRF-206ENST00000429895 EVA1CP58658 441 aa19.15■□□□□ 0.66
PTPRF-206ENST00000429895 CENPJQ9HC77 1338 aaPredicted RBP19.15■□□□□ 0.66
PTPRF-206ENST00000429895 ELL2O00472 640 aaPredicted RBP19.15■□□□□ 0.66
PTPRF-206ENST00000429895 CEP89Q96ST8 783 aa19.15■□□□□ 0.66
PTPRF-206ENST00000429895 SF3A1Q15459 793 aaKnown RBP19.14■□□□□ 0.65
PTPRF-206ENST00000429895 KIF16BQ96L93 1317 aa19.14■□□□□ 0.65
PTPRF-206ENST00000429895 LMOD3Q0VAK6 560 aa19.13■□□□□ 0.65
PTPRF-206ENST00000429895 RILPL2Q969X0 211 aa19.13■□□□□ 0.65
PTPRF-206ENST00000429895 TCERG1O14776 1098 aaKnown RBP19.13■□□□□ 0.65
PTPRF-206ENST00000429895 CSPP1Q1MSJ5 1256 aa19.13■□□□□ 0.65
PTPRF-206ENST00000429895 NACADO15069 1562 aa19.12■□□□□ 0.65
PTPRF-206ENST00000429895 GOLGA6L3A6NEY3 463 aa19.11■□□□□ 0.65
PTPRF-206ENST00000429895 TDRD9Q8NDG6 1382 aaKnown RBP19.11■□□□□ 0.65
PTPRF-206ENST00000429895 C1orf141Q5JVX7 400 aa19.1■□□□□ 0.65
PTPRF-206ENST00000429895 RAB3GAP2Q9H2M9 1393 aa19.1■□□□□ 0.65
PTPRF-206ENST00000429895 GOLGA6L1Q8N7Z2 621 aa19.1■□□□□ 0.65
PTPRF-206ENST00000429895 H3BQV1 296 aa19.09■□□□□ 0.65
PTPRF-206ENST00000429895 FOXD4L6Q3SYB3 417 aaPredicted RBP19.09■□□□□ 0.65
PTPRF-206ENST00000429895 IFFO2Q5TF58 517 aa19.09■□□□□ 0.65
PTPRF-206ENST00000429895 FOXD4L3Q6VB84 417 aaPredicted RBP19.09■□□□□ 0.65
PTPRF-206ENST00000429895 TPD52L1Q16890 204 aaPredicted RBP19.09■□□□□ 0.65
PTPRF-206ENST00000429895 TPM3P06753 285 aa19.08■□□□□ 0.65
PTPRF-206ENST00000429895 BCL2L13Q9BXK5 485 aa19.08■□□□□ 0.64
PTPRF-206ENST00000429895 ST18O60284 1047 aa19.07■□□□□ 0.64
PTPRF-206ENST00000429895 FBXW7Q969H0 707 aa19.06■□□□□ 0.64
PTPRF-206ENST00000429895 L3MBTL2Q969R5 705 aa19.05■□□□□ 0.64
PTPRF-206ENST00000429895 EIF2S2P20042 333 aaKnown RBP19.05■□□□□ 0.64
PTPRF-206ENST00000429895 AKAP17AQ02040 695 aaKnown RBP19.05■□□□□ 0.64
PTPRF-206ENST00000429895 SYTL4Q96C24 671 aaPredicted RBP19.05■□□□□ 0.64
PTPRF-206ENST00000429895 TRIM34Q9BYJ4 488 aa19.05■□□□□ 0.64
PTPRF-206ENST00000429895 BAZ1AQ9NRL2 1556 aaPredicted RBP19.05■□□□□ 0.64
PTPRF-206ENST00000429895 FAM184AQ8NB25 1140 aa19.05■□□□□ 0.64
PTPRF-206ENST00000429895 NECTIN2Q92692 538 aa19.04■□□□□ 0.64
PTPRF-206ENST00000429895 FBXO3Q9UK99 471 aa19.04■□□□□ 0.64
PTPRF-206ENST00000429895 ANKRD45Q5TZF3 282 aa19.03■□□□□ 0.64
PTPRF-206ENST00000429895 MEX3CQ5U5Q3 659 aaKnown RBP19.03■□□□□ 0.64
PTPRF-206ENST00000429895 TCEAL9Q9UHQ7 104 aa19.03■□□□□ 0.64
PTPRF-206ENST00000429895 CTDP1Q9Y5B0 961 aaPredicted RBP19.03■□□□□ 0.64
PTPRF-206ENST00000429895 CECR2Q9BXF3 1484 aa19.03■□□□□ 0.64
PTPRF-206ENST00000429895 COG3Q96JB2 828 aa19.03■□□□□ 0.64
PTPRF-206ENST00000429895 KIF3AQ9Y496 699 aa19.03■□□□□ 0.64
PTPRF-206ENST00000429895 TNNT3P45378 269 aaPredicted RBP19.02■□□□□ 0.63
PTPRF-206ENST00000429895 KLHL34Q8N239 644 aa19.02■□□□□ 0.63
PTPRF-206ENST00000429895 MCTP1Q6DN14 999 aa19.01■□□□□ 0.63
PTPRF-206ENST00000429895 TTC5Q8N0Z6 440 aa19.01■□□□□ 0.63
PTPRF-206ENST00000429895 VPS8Q8N3P4 1428 aa19.01■□□□□ 0.63
PTPRF-206ENST00000429895 NOL10Q9BSC4 688 aaKnown RBP19.01■□□□□ 0.63
PTPRF-206ENST00000429895 TEFQ10587 303 aa19■□□□□ 0.63
PTPRF-206ENST00000429895 NLRP13Q86W25 1043 aa19■□□□□ 0.63
PTPRF-206ENST00000429895 PANK3Q9H999 370 aa18.99■□□□□ 0.63
PTPRF-206ENST00000429895 ABCC8Q09428 1581 aa18.99■□□□□ 0.63
PTPRF-206ENST00000429895 PHF14O94880 888 aa18.99■□□□□ 0.63
PTPRF-206ENST00000429895 SYNE3Q6ZMZ3 975 aa18.99■□□□□ 0.63
PTPRF-206ENST00000429895 FMN1Q68DA7 1419 aa18.98■□□□□ 0.63
PTPRF-206ENST00000429895 CCAR2Q8N163 923 aaKnown RBP18.98■□□□□ 0.63
PTPRF-206ENST00000429895 MINK1Q8N4C8 1332 aaPredicted RBP18.98■□□□□ 0.63
PTPRF-206ENST00000429895 DHX16O60231 1041 aaKnown RBP18.97■□□□□ 0.63
PTPRF-206ENST00000429895 AMOTL1Q8IY63 956 aa18.97■□□□□ 0.63
PTPRF-206ENST00000429895 PDS5BQ9NTI5 1447 aa18.97■□□□□ 0.63
PTPRF-206ENST00000429895 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.97■□□□□ 0.63
PTPRF-206ENST00000429895 TSR1Q2NL82 804 aaKnown RBP18.97■□□□□ 0.63
PTPRF-206ENST00000429895 PLIN1O60240 522 aa18.97■□□□□ 0.63
PTPRF-206ENST00000429895 APPP05067 770 aa18.97■□□□□ 0.63
PTPRF-206ENST00000429895 SAMD1Q6SPF0 538 aaPredicted RBP18.96■□□□□ 0.63
PTPRF-206ENST00000429895 C9orf78Q9NZ63 289 aaPredicted RBP18.96■□□□□ 0.63
PTPRF-206ENST00000429895 IPO9Q96P70 1041 aaKnown RBP18.96■□□□□ 0.63
PTPRF-206ENST00000429895 DIAPH3Q9NSV4 1193 aa18.95■□□□□ 0.62
PTPRF-206ENST00000429895 VPS37DQ86XT2 251 aa18.95■□□□□ 0.62
PTPRF-206ENST00000429895 NEXNQ0ZGT2 675 aa18.95■□□□□ 0.62
PTPRF-206ENST00000429895 TPM2P07951 284 aa18.94■□□□□ 0.62
PTPRF-206ENST00000429895 PCMTD1Q96MG8 357 aaPredicted RBP18.94■□□□□ 0.62
PTPRF-206ENST00000429895 ST20-MTHFSA0A0A6YYL1 179 aa18.93■□□□□ 0.62
PTPRF-206ENST00000429895 SLC4A3P48751 1232 aa18.93■□□□□ 0.62
PTPRF-206ENST00000429895 FHOD3Q2V2M9 1422 aa18.93■□□□□ 0.62
PTPRF-206ENST00000429895 GOLGA6L19H0YKK7 550 aa18.93■□□□□ 0.62
PTPRF-206ENST00000429895 KRI1Q8N9T8 703 aaKnown RBP18.93■□□□□ 0.62
PTPRF-206ENST00000429895 CNKSR2Q8WXI2 1034 aa18.92■□□□□ 0.62
PTPRF-206ENST00000429895 BECN2A8MW95 431 aa18.91■□□□□ 0.62
PTPRF-206ENST00000429895 KIF15Q9NS87 1388 aa18.91■□□□□ 0.62
PTPRF-206ENST00000429895 CWC22Q9HCG8 908 aaKnown RBP18.91■□□□□ 0.62
PTPRF-206ENST00000429895 ANO2Q9NQ90 1003 aa18.91■□□□□ 0.62
PTPRF-206ENST00000429895 TRIM29Q14134 588 aa18.91■□□□□ 0.62
PTPRF-206ENST00000429895 CGNL1Q0VF96 1302 aa18.9■□□□□ 0.62
PTPRF-206ENST00000429895 PSME1Q06323 249 aa18.9■□□□□ 0.62
PTPRF-206ENST00000429895 PDE3BQ13370 1112 aa18.9■□□□□ 0.62
PTPRF-206ENST00000429895 ZKSCAN2Q63HK3 967 aa18.9■□□□□ 0.62
PTPRF-206ENST00000429895 EVC2Q86UK5 1308 aa18.9■□□□□ 0.62
PTPRF-206ENST00000429895 MYBBP1AQ9BQG0 1328 aaKnown RBP18.9■□□□□ 0.62
PTPRF-206ENST00000429895 AEBP2Q6ZN18 517 aaPredicted RBP18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms