RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TCERG1O14776 1098 aaKnown RBP8.49□□□□□ -1.05
SCN1A-204ENST00000423058 H3BQV1 296 aa8.49□□□□□ -1.05
SCN1A-204ENST00000423058 IFFO2Q5TF58 517 aa8.49□□□□□ -1.05
SCN1A-204ENST00000423058 VPS37DQ86XT2 251 aa8.49□□□□□ -1.05
SCN1A-204ENST00000423058 HOOK1Q9UJC3 728 aaKnown RBP8.48□□□□□ -1.05
SCN1A-204ENST00000423058 TIMELESSQ9UNS1 1208 aa8.48□□□□□ -1.05
SCN1A-204ENST00000423058 ST18O60284 1047 aa8.48□□□□□ -1.05
SCN1A-204ENST00000423058 WWC2Q6AWC2 1192 aa8.48□□□□□ -1.05
SCN1A-204ENST00000423058 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.48□□□□□ -1.05
SCN1A-204ENST00000423058 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.48□□□□□ -1.05
SCN1A-204ENST00000423058 ANKRD20A12PQ8NF67 263 aa8.48□□□□□ -1.05
SCN1A-204ENST00000423058 SMC4Q9NTJ3 1288 aa8.48□□□□□ -1.05
SCN1A-204ENST00000423058 SPRYD3Q8NCJ5 442 aa8.47□□□□□ -1.05
SCN1A-204ENST00000423058 R3HCC1Q9Y3T6 440 aaKnown RBP8.47□□□□□ -1.05
SCN1A-204ENST00000423058 CPLX2Q6PUV4 134 aaKnown RBP8.47□□□□□ -1.05
SCN1A-204ENST00000423058 PHF23Q9BUL5 403 aaPredicted RBP8.47□□□□□ -1.05
SCN1A-204ENST00000423058 GPS2Q13227 327 aa8.46□□□□□ -1.05
SCN1A-204ENST00000423058 TRIM29Q14134 588 aa8.46□□□□□ -1.05
SCN1A-204ENST00000423058 ATP6V1DQ9Y5K8 247 aa8.46□□□□□ -1.05
SCN1A-204ENST00000423058 UACAQ9BZF9 1416 aa8.46□□□□□ -1.05
SCN1A-204ENST00000423058 RALBP1Q15311 655 aa8.46□□□□□ -1.05
SCN1A-204ENST00000423058 FAM184AQ8NB25 1140 aa8.46□□□□□ -1.05
SCN1A-204ENST00000423058 IPO7O95373 1038 aaKnown RBP8.46□□□□□ -1.06
SCN1A-204ENST00000423058 ODF2Q5BJF6 829 aa8.46□□□□□ -1.06
SCN1A-204ENST00000423058 EFCAB2Q5VUJ9 269 aa8.46□□□□□ -1.06
SCN1A-204ENST00000423058 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.46□□□□□ -1.06
SCN1A-204ENST00000423058 NEXNQ0ZGT2 675 aa8.46□□□□□ -1.06
SCN1A-204ENST00000423058 SLC4A10Q6U841 1118 aa8.45□□□□□ -1.06
SCN1A-204ENST00000423058 RDXP35241 583 aaKnown RBP8.45□□□□□ -1.06
SCN1A-204ENST00000423058 GOLGA6L19H0YKK7 550 aa8.45□□□□□ -1.06
SCN1A-204ENST00000423058 BAZ1AQ9NRL2 1556 aaPredicted RBP8.45□□□□□ -1.06
SCN1A-204ENST00000423058 RAD21O60216 631 aa8.45□□□□□ -1.06
SCN1A-204ENST00000423058 B4GALNT3Q6L9W6 998 aa8.45□□□□□ -1.06
SCN1A-204ENST00000423058 TTC5Q8N0Z6 440 aa8.45□□□□□ -1.06
SCN1A-204ENST00000423058 SENP3-EIF4A1A0A087X0R7 540 aa8.45□□□□□ -1.06
SCN1A-204ENST00000423058 PRDM2Q13029 1718 aa8.45□□□□□ -1.06
SCN1A-204ENST00000423058 RRP12Q5JTH9 1297 aaKnown RBP8.44□□□□□ -1.06
SCN1A-204ENST00000423058 WWC1Q8IX03 1113 aa8.44□□□□□ -1.06
SCN1A-204ENST00000423058 PHLDB1Q86UU1 1377 aa8.44□□□□□ -1.06
SCN1A-204ENST00000423058 ANKRD30AQ9BXX3 1397 aa8.43□□□□□ -1.06
SCN1A-204ENST00000423058 PDS5BQ9NTI5 1447 aa8.43□□□□□ -1.06
SCN1A-204ENST00000423058 ERICH2A1L162 156 aa8.43□□□□□ -1.06
SCN1A-204ENST00000423058 WASHC2CQ9Y4E1 1318 aa8.43□□□□□ -1.06
SCN1A-204ENST00000423058 CCAR1Q8IX12 1150 aaKnown RBP8.43□□□□□ -1.06
SCN1A-204ENST00000423058 FBXW7Q969H0 707 aa8.43□□□□□ -1.06
SCN1A-204ENST00000423058 PCMTD1Q96MG8 357 aaPredicted RBP8.43□□□□□ -1.06
SCN1A-204ENST00000423058 RSPH4AQ5TD94 716 aa8.42□□□□□ -1.06
SCN1A-204ENST00000423058 RBM33Q96EV2 1170 aaKnown RBP8.42□□□□□ -1.06
SCN1A-204ENST00000423058 CT47A1Q5JQC4 288 aaPredicted RBP8.42□□□□□ -1.06
SCN1A-204ENST00000423058 RUFY2Q8WXA3 655 aa8.42□□□□□ -1.06
SCN1A-204ENST00000423058 TRDNQ13061 729 aa8.42□□□□□ -1.06
SCN1A-204ENST00000423058 DHX16O60231 1041 aaKnown RBP8.41□□□□□ -1.06
SCN1A-204ENST00000423058 AMER1Q5JTC6 1135 aaPredicted RBP8.41□□□□□ -1.06
SCN1A-204ENST00000423058 LTV1Q96GA3 475 aaPredicted RBP8.41□□□□□ -1.06
SCN1A-204ENST00000423058 CDR1P51861 262 aa8.41□□□□□ -1.06
SCN1A-204ENST00000423058 DDX58O95786 925 aaKnown RBP8.4□□□□□ -1.06
SCN1A-204ENST00000423058 CUX2O14529 1486 aa8.4□□□□□ -1.06
SCN1A-204ENST00000423058 SMARCA2P51531 1590 aa8.4□□□□□ -1.06
SCN1A-204ENST00000423058 FMN1Q68DA7 1419 aa8.4□□□□□ -1.06
SCN1A-204ENST00000423058 FBXO3Q9UK99 471 aa8.4□□□□□ -1.06
SCN1A-204ENST00000423058 TNIKQ9UKE5 1360 aa8.4□□□□□ -1.06
SCN1A-204ENST00000423058 EPS15P42566 896 aa8.4□□□□□ -1.06
SCN1A-204ENST00000423058 TEFQ10587 303 aa8.4□□□□□ -1.06
SCN1A-204ENST00000423058 KLHL34Q8N239 644 aa8.4□□□□□ -1.06
SCN1A-204ENST00000423058 RCAN3Q9UKA8 241 aa8.4□□□□□ -1.06
SCN1A-204ENST00000423058 CCDC18Q5T9S5 1454 aa8.4□□□□□ -1.06
SCN1A-204ENST00000423058 CARMIL1Q5VZK9 1371 aa8.4□□□□□ -1.07
SCN1A-204ENST00000423058 BECN2A8MW95 431 aa8.4□□□□□ -1.07
SCN1A-204ENST00000423058 APPP05067 770 aa8.39□□□□□ -1.07
SCN1A-204ENST00000423058 ROCK1Q13464 1354 aa8.39□□□□□ -1.07
SCN1A-204ENST00000423058 SF3B2Q13435 895 aaKnown RBP8.39□□□□□ -1.07
SCN1A-204ENST00000423058 C9orf78Q9NZ63 289 aaPredicted RBP8.39□□□□□ -1.07
SCN1A-204ENST00000423058 PKD2Q13563 968 aa8.39□□□□□ -1.07
SCN1A-204ENST00000423058 MYO6Q9UM54 1294 aa8.39□□□□□ -1.07
SCN1A-204ENST00000423058 SETD5Q9C0A6 1442 aa8.39□□□□□ -1.07
SCN1A-204ENST00000423058 COG3Q96JB2 828 aa8.39□□□□□ -1.07
SCN1A-204ENST00000423058 HMGB2P26583 209 aaKnown RBP8.38□□□□□ -1.07
SCN1A-204ENST00000423058 NUP155O75694 1391 aa8.38□□□□□ -1.07
SCN1A-204ENST00000423058 SYTL4Q96C24 671 aaPredicted RBP8.38□□□□□ -1.07
SCN1A-204ENST00000423058 MFAP1P55081 439 aaKnown RBP8.38□□□□□ -1.07
SCN1A-204ENST00000423058 BRMS1Q9HCU9 246 aa8.38□□□□□ -1.07
SCN1A-204ENST00000423058 GOLGA6L3A6NEY3 463 aa8.38□□□□□ -1.07
SCN1A-204ENST00000423058 CCER2I3L3R5 266 aa8.38□□□□□ -1.07
SCN1A-204ENST00000423058 CALRP27797 417 aaKnown RBP8.38□□□□□ -1.07
SCN1A-204ENST00000423058 PSME1Q06323 249 aa8.38□□□□□ -1.07
SCN1A-204ENST00000423058 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.38□□□□□ -1.07
SCN1A-204ENST00000423058 CCDC173Q0VFZ6 552 aa8.38□□□□□ -1.07
SCN1A-204ENST00000423058 RNF20Q5VTR2 975 aa8.38□□□□□ -1.07
SCN1A-204ENST00000423058 PAF1Q8N7H5 531 aa8.38□□□□□ -1.07
SCN1A-204ENST00000423058 RTN4Q9NQC3 1192 aaKnown RBP8.38□□□□□ -1.07
SCN1A-204ENST00000423058 DIAPH3Q9NSV4 1193 aa8.38□□□□□ -1.07
SCN1A-204ENST00000423058 DDX11L8A8MPP1 907 aa8.37□□□□□ -1.07
SCN1A-204ENST00000423058 KIF3BO15066 747 aa8.37□□□□□ -1.07
SCN1A-204ENST00000423058 MCTP1Q6DN14 999 aa8.37□□□□□ -1.07
SCN1A-204ENST00000423058 CPLX1O14810 134 aa8.37□□□□□ -1.07
SCN1A-204ENST00000423058 CCAR2Q8N163 923 aaKnown RBP8.37□□□□□ -1.07
SCN1A-204ENST00000423058 RILPL2Q969X0 211 aa8.37□□□□□ -1.07
SCN1A-204ENST00000423058 CENPJQ9HC77 1338 aaPredicted RBP8.37□□□□□ -1.07
SCN1A-204ENST00000423058 GZF1Q9H116 711 aaPredicted RBP8.37□□□□□ -1.07
SCN1A-204ENST00000423058 SAFBQ15424 915 aaKnown RBP eCLIP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms