RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 TRAPPC8Q9Y2L5 1435 aa14.98□□□□□ -0.01
DDX56-203ENST00000421223 PREX2Q70Z35 1606 aa14.98□□□□□ -0.01
DDX56-203ENST00000421223 ARHGEF12Q9NZN5 1544 aa14.98□□□□□ -0.01
DDX56-203ENST00000421223 FAM135AQ9P2D6 1515 aa14.97□□□□□ -0.01
DDX56-203ENST00000421223 PLCH2O75038 1416 aa14.97□□□□□ -0.01
DDX56-203ENST00000421223 KIF3BO15066 747 aa14.97□□□□□ -0.01
DDX56-203ENST00000421223 ARHGEF5Q12774 1597 aa14.97□□□□□ -0.01
DDX56-203ENST00000421223 SHROOM2Q13796 1616 aa14.96□□□□□ -0.01
DDX56-203ENST00000421223 TMC1Q8TDI8 760 aa14.95□□□□□ -0.02
DDX56-203ENST00000421223 OSCARQ8IYS5 282 aa14.94□□□□□ -0.02
DDX56-203ENST00000421223 SALL2Q9Y467 1007 aaPredicted RBP14.93□□□□□ -0.02
DDX56-203ENST00000421223 ZCCHC11Q5TAX3 1644 aaKnown RBP14.92□□□□□ -0.02
DDX56-203ENST00000421223 CHGAP10645 457 aaKnown RBP14.91□□□□□ -0.02
DDX56-203ENST00000421223 MYO5CQ9NQX4 1742 aa14.91□□□□□ -0.02
DDX56-203ENST00000421223 SCAPERQ9BY12 1400 aa14.9□□□□□ -0.02
DDX56-203ENST00000421223 CLASP1Q7Z460 1538 aa14.9□□□□□ -0.02
DDX56-203ENST00000421223 SENP3Q9H4L4 574 aaPredicted RBP14.9□□□□□ -0.02
DDX56-203ENST00000421223 PLA2R1Q13018 1463 aa14.89□□□□□ -0.03
DDX56-203ENST00000421223 CC2D1BQ5T0F9 858 aaKnown RBP14.88□□□□□ -0.03
DDX56-203ENST00000421223 RALGAPBQ86X10 1494 aa14.88□□□□□ -0.03
DDX56-203ENST00000421223 BCORL1Q5H9F3 1711 aa14.88□□□□□ -0.03
DDX56-203ENST00000421223 UHRF1BP1Q6BDS2 1440 aa14.87□□□□□ -0.03
DDX56-203ENST00000421223 DHX29Q7Z478 1369 aaKnown RBP14.87□□□□□ -0.03
DDX56-203ENST00000421223 GGT6Q6P531 493 aa14.87□□□□□ -0.03
DDX56-203ENST00000421223 KDM5DQ9BY66 1539 aa14.86□□□□□ -0.03
DDX56-203ENST00000421223 FANCAO15360 1455 aa14.85□□□□□ -0.03
DDX56-203ENST00000421223 DUOX2Q9NRD8 1548 aa14.85□□□□□ -0.03
DDX56-203ENST00000421223 TSHZ2Q9NRE2 1034 aa14.85□□□□□ -0.03
DDX56-203ENST00000421223 UHRF1BP1LA0JNW5 1464 aa14.84□□□□□ -0.03
DDX56-203ENST00000421223 WDR7Q9Y4E6 1490 aa14.84□□□□□ -0.03
DDX56-203ENST00000421223 PRAG1Q86YV5 1406 aa14.84□□□□□ -0.03
DDX56-203ENST00000421223 ASXL2Q76L83 1435 aa14.84□□□□□ -0.03
DDX56-203ENST00000421223 KDM5CP41229 1560 aa14.84□□□□□ -0.03
DDX56-203ENST00000421223 A2MP01023 1474 aa14.83□□□□□ -0.04
DDX56-203ENST00000421223 PANK3Q9H999 370 aa14.82□□□□□ -0.04
DDX56-203ENST00000421223 KANK1Q14678 1352 aa14.82□□□□□ -0.04
DDX56-203ENST00000421223 ARID4BQ4LE39 1312 aaPredicted RBP14.82□□□□□ -0.04
DDX56-203ENST00000421223 ADGRL1O94910 1474 aa14.81□□□□□ -0.04
DDX56-203ENST00000421223 ERBINQ96RT1 1412 aa14.81□□□□□ -0.04
DDX56-203ENST00000421223 ABCC1P33527 1531 aa14.81□□□□□ -0.04
DDX56-203ENST00000421223 TMF1P82094 1093 aa14.81□□□□□ -0.04
DDX56-203ENST00000421223 ZBED9Q6R2W3 1325 aa14.8□□□□□ -0.04
DDX56-203ENST00000421223 RAPGEF3O95398 923 aa14.79□□□□□ -0.04
DDX56-203ENST00000421223 CYB5RLQ6IPT4 315 aa14.79□□□□□ -0.04
DDX56-203ENST00000421223 PNISRQ8TF01 805 aaKnown RBP14.79□□□□□ -0.04
DDX56-203ENST00000421223 DISP3Q9P2K9 1392 aa14.79□□□□□ -0.04
DDX56-203ENST00000421223 MAST1Q9Y2H9 1570 aa14.78□□□□□ -0.04
DDX56-203ENST00000421223 TESK2Q96S53 571 aa14.78□□□□□ -0.04
DDX56-203ENST00000421223 NUTM2DQ5VT03 806 aaPredicted RBP14.77□□□□□ -0.04
DDX56-203ENST00000421223 CFAP70Q5T0N1 1121 aa14.76□□□□□ -0.05
DDX56-203ENST00000421223 MYBBP1AQ9BQG0 1328 aaKnown RBP14.76□□□□□ -0.05
DDX56-203ENST00000421223 PLXNC1O60486 1568 aa14.76□□□□□ -0.05
DDX56-203ENST00000421223 B4GALNT3Q6L9W6 998 aa14.76□□□□□ -0.05
DDX56-203ENST00000421223 UNC13BO14795 1591 aa14.76□□□□□ -0.05
DDX56-203ENST00000421223 RALBP1Q15311 655 aa14.76□□□□□ -0.05
DDX56-203ENST00000421223 KTN1Q86UP2 1357 aaKnown RBP14.75□□□□□ -0.05
DDX56-203ENST00000421223 CD109Q6YHK3 1445 aa14.73□□□□□ -0.05
DDX56-203ENST00000421223 IQGAP3Q86VI3 1631 aa14.73□□□□□ -0.05
DDX56-203ENST00000421223 POLR1AO95602 1720 aaPredicted RBP14.73□□□□□ -0.05
DDX56-203ENST00000421223 RTEL1-TNFRSF6BF6WH68 1400 aa14.72□□□□□ -0.05
DDX56-203ENST00000421223 WASHC2CQ9Y4E1 1318 aa14.72□□□□□ -0.05
DDX56-203ENST00000421223 NLRP13Q86W25 1043 aa14.72□□□□□ -0.05
DDX56-203ENST00000421223 KNSTRNQ9Y448 316 aa14.72□□□□□ -0.05
DDX56-203ENST00000421223 ATP7AQ04656 1500 aa14.72□□□□□ -0.05
DDX56-203ENST00000421223 ZFYVE16Q7Z3T8 1539 aa14.72□□□□□ -0.05
DDX56-203ENST00000421223 ADGRF5Q8IZF2 1346 aa14.71□□□□□ -0.05
DDX56-203ENST00000421223 PER1O15534 1290 aaPredicted RBP14.71□□□□□ -0.05
DDX56-203ENST00000421223 ATP10AO60312 1499 aa14.7□□□□□ -0.06
DDX56-203ENST00000421223 NUDCQ9Y266 331 aa14.69□□□□□ -0.06
DDX56-203ENST00000421223 GPRASP1Q5JY77 1395 aa14.68□□□□□ -0.06
DDX56-203ENST00000421223 TRPM1Q7Z4N2 1603 aa14.68□□□□□ -0.06
DDX56-203ENST00000421223 PPP4R2Q9NY27 417 aa14.68□□□□□ -0.06
DDX56-203ENST00000421223 TRAK1Q9UPV9 953 aa14.68□□□□□ -0.06
DDX56-203ENST00000421223 UGGT1Q9NYU2 1555 aa14.68□□□□□ -0.06
DDX56-203ENST00000421223 DAXXQ9UER7 740 aaPredicted RBP14.68□□□□□ -0.06
DDX56-203ENST00000421223 CFAP65Q6ZU64 1925 aaKnown RBP14.68□□□□□ -0.06
DDX56-203ENST00000421223 TMEM132EQ6IEE7 984 aa14.67□□□□□ -0.06
DDX56-203ENST00000421223 BRD4O60885 1362 aaPredicted RBP14.66□□□□□ -0.06
DDX56-203ENST00000421223 MAGI2Q86UL8 1455 aa14.66□□□□□ -0.06
DDX56-203ENST00000421223 E9PCH4 1651 aa14.66□□□□□ -0.06
DDX56-203ENST00000421223 SAFB2Q14151 953 aaKnown RBP eCLIP14.65□□□□□ -0.06
DDX56-203ENST00000421223 RBM19Q9Y4C8 960 aaKnown RBP14.65□□□□□ -0.06
DDX56-203ENST00000421223 CDCA7LQ96GN5 454 aa14.64□□□□□ -0.07
DDX56-203ENST00000421223 CDCA8Q53HL2 280 aa14.63□□□□□ -0.07
DDX56-203ENST00000421223 ABCA9Q8IUA7 1624 aa14.63□□□□□ -0.07
DDX56-203ENST00000421223 COL17A1Q9UMD9 1497 aaPredicted RBP14.63□□□□□ -0.07
DDX56-203ENST00000421223 TNNT2P45379 298 aaPredicted RBP14.63□□□□□ -0.07
DDX56-203ENST00000421223 ZNF518AQ6AHZ1 1483 aa14.62□□□□□ -0.07
DDX56-203ENST00000421223 ARAP3Q8WWN8 1544 aa14.62□□□□□ -0.07
DDX56-203ENST00000421223 PARD3Q8TEW0 1356 aa14.61□□□□□ -0.07
DDX56-203ENST00000421223 WDR43Q15061 677 aaKnown RBP eCLIP14.61□□□□□ -0.07
DDX56-203ENST00000421223 PTPRTO14522 1441 aa14.61□□□□□ -0.07
DDX56-203ENST00000421223 FAM69CQ0P6D2 419 aa14.61□□□□□ -0.07
DDX56-203ENST00000421223 CCDC136Q96JN2 1154 aa14.61□□□□□ -0.07
DDX56-203ENST00000421223 CLTCL1P53675 1640 aa14.61□□□□□ -0.07
DDX56-203ENST00000421223 PRDM15P57071 1507 aaPredicted RBP14.61□□□□□ -0.07
DDX56-203ENST00000421223 ADAMTS8Q9UP79 889 aa14.6□□□□□ -0.07
DDX56-203ENST00000421223 MLECQ14165 292 aa14.6□□□□□ -0.07
DDX56-203ENST00000421223 AEBP2Q6ZN18 517 aaPredicted RBP14.6□□□□□ -0.07
DDX56-203ENST00000421223 STK26Q9P289 416 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms