RNA–Protein interactions for RNA: ENST00000413333.1

HMGB3P31-201, Transcript of high mobility group box 3 pseudogene 31, humanhuman

BASIC

Gene HMGB3P31, Length 595 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P31-201ENST00000413333 SLAIN1Q8ND83 568 aa9.25□□□□□ -0.93
HMGB3P31-201ENST00000413333 TYW1BQ6NUM6 668 aa9.24□□□□□ -0.93
HMGB3P31-201ENST00000413333 REPIN1Q9BWE0 567 aaKnown RBP9.24□□□□□ -0.93
HMGB3P31-201ENST00000413333 ZMYND15Q9H091 742 aa9.24□□□□□ -0.93
HMGB3P31-201ENST00000413333 MS4A1P11836 297 aa9.23□□□□□ -0.93
HMGB3P31-201ENST00000413333 HOMEZQ8IX15 550 aa9.23□□□□□ -0.93
HMGB3P31-201ENST00000413333 MDM2Q00987 491 aaPredicted RBP9.21□□□□□ -0.94
HMGB3P31-201ENST00000413333 CLCN1P35523 988 aa9.19□□□□□ -0.94
HMGB3P31-201ENST00000413333 FAM161AQ3B820 660 aa9.19□□□□□ -0.94
HMGB3P31-201ENST00000413333 FBXW7Q969H0 707 aa9.19□□□□□ -0.94
HMGB3P31-201ENST00000413333 JPH4Q96JJ6 628 aa9.19□□□□□ -0.94
HMGB3P31-201ENST00000413333 PCMTD1Q96MG8 357 aaPredicted RBP9.19□□□□□ -0.94
HMGB3P31-201ENST00000413333 PHOX2BQ99453 314 aa9.18□□□□□ -0.94
HMGB3P31-201ENST00000413333 RSPH6AQ9H0K4 717 aa9.18□□□□□ -0.94
HMGB3P31-201ENST00000413333 GPCPD1Q9NPB8 672 aa9.18□□□□□ -0.94
HMGB3P31-201ENST00000413333 ZNF454Q8N9F8 522 aa9.17□□□□□ -0.94
HMGB3P31-201ENST00000413333 SSTR3P32745 418 aaPredicted RBP9.16□□□□□ -0.94
HMGB3P31-201ENST00000413333 FOSBP53539 338 aa9.16□□□□□ -0.94
HMGB3P31-201ENST00000413333 LHX8Q68G74 356 aa9.16□□□□□ -0.94
HMGB3P31-201ENST00000413333 PADI6Q6TGC4 694 aa9.16□□□□□ -0.94
HMGB3P31-201ENST00000413333 GOPCQ9HD26 462 aa9.16□□□□□ -0.94
HMGB3P31-201ENST00000413333 ATP1B4Q9UN42 357 aaPredicted RBP9.16□□□□□ -0.94
HMGB3P31-201ENST00000413333 NUDT7P0C024 238 aa9.15□□□□□ -0.94
HMGB3P31-201ENST00000413333 C6orf132Q5T0Z8 1188 aa9.15□□□□□ -0.94
HMGB3P31-201ENST00000413333 NLRP7Q8WX94 980 aa9.15□□□□□ -0.94
HMGB3P31-201ENST00000413333 TMUB1Q9BVT8 246 aa9.15□□□□□ -0.94
HMGB3P31-201ENST00000413333 KDM4FA0A1W2PPD8 638 aa9.14□□□□□ -0.95
HMGB3P31-201ENST00000413333 KHSRPQ92945 711 aaKnown RBP eCLIP9.14□□□□□ -0.95
HMGB3P31-201ENST00000413333 ZDHHC16Q969W1 377 aa9.14□□□□□ -0.95
HMGB3P31-201ENST00000413333 OATP04181 439 aa9.13□□□□□ -0.95
HMGB3P31-201ENST00000413333 FLIIQ13045 1269 aa9.13□□□□□ -0.95
HMGB3P31-201ENST00000413333 ARSIQ5FYB1 569 aa9.13□□□□□ -0.95
HMGB3P31-201ENST00000413333 CERKQ8TCT0 537 aa9.13□□□□□ -0.95
HMGB3P31-201ENST00000413333 DOK7Q18PE1 504 aa9.12□□□□□ -0.95
HMGB3P31-201ENST00000413333 SH3D19Q5HYK7 790 aa9.12□□□□□ -0.95
HMGB3P31-201ENST00000413333 METTL3Q86U44 580 aaKnown RBP9.12□□□□□ -0.95
HMGB3P31-201ENST00000413333 BEGAINQ9BUH8 593 aa9.12□□□□□ -0.95
HMGB3P31-201ENST00000413333 ADAM33Q9BZ11 813 aa9.11□□□□□ -0.95
HMGB3P31-201ENST00000413333 PXYLP1Q8TE99 480 aa9.1□□□□□ -0.95
HMGB3P31-201ENST00000413333 ADGRG1Q9Y653 693 aa9.1□□□□□ -0.95
HMGB3P31-201ENST00000413333 RIMBP2O15034 1052 aa9.09□□□□□ -0.95
HMGB3P31-201ENST00000413333 FAM217BQ9NTX9 383 aaPredicted RBP9.09□□□□□ -0.95
HMGB3P31-201ENST00000413333 SKIV2LQ15477 1246 aaKnown RBP9.08□□□□□ -0.96
HMGB3P31-201ENST00000413333 ARID3AQ99856 593 aa9.08□□□□□ -0.96
HMGB3P31-201ENST00000413333 POLR3EQ9NVU0 708 aa9.08□□□□□ -0.96
HMGB3P31-201ENST00000413333 PRSS12P56730 875 aa9.07□□□□□ -0.96
HMGB3P31-201ENST00000413333 ZNF710Q8N1W2 664 aa9.07□□□□□ -0.96
HMGB3P31-201ENST00000413333 HOXB3P14651 431 aaPredicted RBP9.06□□□□□ -0.96
HMGB3P31-201ENST00000413333 PROCA1Q8NCQ7 364 aaPredicted RBP9.06□□□□□ -0.96
HMGB3P31-201ENST00000413333 RBM46Q8TBY0 533 aaKnown RBP9.06□□□□□ -0.96
HMGB3P31-201ENST00000413333 CDCA7LQ96GN5 454 aa9.06□□□□□ -0.96
HMGB3P31-201ENST00000413333 RBM27Q9P2N5 1060 aaKnown RBP9.06□□□□□ -0.96
HMGB3P31-201ENST00000413333 ARID3CA6NKF2 412 aa9.05□□□□□ -0.96
HMGB3P31-201ENST00000413333 ONECUT3O60422 494 aaPredicted RBP9.05□□□□□ -0.96
HMGB3P31-201ENST00000413333 POTEJP0CG39 1038 aa9.05□□□□□ -0.96
HMGB3P31-201ENST00000413333 GPR153Q6NV75 609 aa9.05□□□□□ -0.96
HMGB3P31-201ENST00000413333 TTC13Q8NBP0 860 aa9.05□□□□□ -0.96
HMGB3P31-201ENST00000413333 CLUAP1Q96AJ1 413 aa9.04□□□□□ -0.96
HMGB3P31-201ENST00000413333 LHX6Q9UPM6 363 aa9.04□□□□□ -0.96
HMGB3P31-201ENST00000413333 UBTFP17480 764 aaKnown RBP9.03□□□□□ -0.96
HMGB3P31-201ENST00000413333 ZSWIM6Q9HCJ5 1215 aa9.03□□□□□ -0.96
HMGB3P31-201ENST00000413333 PPP4R3BQ5MIZ7 849 aa9.02□□□□□ -0.97
HMGB3P31-201ENST00000413333 MYSM1Q5VVJ2 828 aa9.02□□□□□ -0.97
HMGB3P31-201ENST00000413333 POTEB2H3BUK9 544 aa9.01□□□□□ -0.97
HMGB3P31-201ENST00000413333 APBB1O00213 710 aa9.01□□□□□ -0.97
HMGB3P31-201ENST00000413333 COL9A1P20849 921 aa9.01□□□□□ -0.97
HMGB3P31-201ENST00000413333 TBC1D2Q9BYX2 928 aa9.01□□□□□ -0.97
HMGB3P31-201ENST00000413333 SCUBE2Q9NQ36 999 aa9.01□□□□□ -0.97
HMGB3P31-201ENST00000413333 FAM198AQ9UFP1 575 aa9.01□□□□□ -0.97
HMGB3P31-201ENST00000413333 RCCD1A6NED2 376 aa9□□□□□ -0.97
HMGB3P31-201ENST00000413333 CLK2P49760 499 aaKnown RBP9□□□□□ -0.97
HMGB3P31-201ENST00000413333 MCM6Q14566 821 aa9□□□□□ -0.97
HMGB3P31-201ENST00000413333 C1orf115Q9H7X2 142 aa9□□□□□ -0.97
HMGB3P31-201ENST00000413333 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.99□□□□□ -0.97
HMGB3P31-201ENST00000413333 PTPREP23469 700 aa8.98□□□□□ -0.97
HMGB3P31-201ENST00000413333 BCL2L12Q9HB09 334 aa8.98□□□□□ -0.97
HMGB3P31-201ENST00000413333 A6NJR5 290 aa8.97□□□□□ -0.97
HMGB3P31-201ENST00000413333 DIXDC1Q155Q3 683 aa8.97□□□□□ -0.97
HMGB3P31-201ENST00000413333 NUDT18Q6ZVK8 323 aa8.97□□□□□ -0.97
HMGB3P31-201ENST00000413333 EYA1Q99502 592 aa8.97□□□□□ -0.97
HMGB3P31-201ENST00000413333 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.97□□□□□ -0.97
HMGB3P31-201ENST00000413333 TSKSQ9UJT2 592 aa8.97□□□□□ -0.97
HMGB3P31-201ENST00000413333 PNMA3Q9UL41 463 aa8.97□□□□□ -0.97
HMGB3P31-201ENST00000413333 PSDA5PKW4 1024 aaPredicted RBP8.96□□□□□ -0.98
HMGB3P31-201ENST00000413333 PPP1R3GB7ZBB8 358 aa8.96□□□□□ -0.98
HMGB3P31-201ENST00000413333 MAMSTRQ6ZN01 415 aa8.96□□□□□ -0.98
HMGB3P31-201ENST00000413333 DDX11L8A8MPP1 907 aa8.95□□□□□ -0.98
HMGB3P31-201ENST00000413333 TRAK2O60296 914 aa8.95□□□□□ -0.98
HMGB3P31-201ENST00000413333 NBPF26B4DH59 902 aa8.94□□□□□ -0.98
HMGB3P31-201ENST00000413333 C3orf80F5H4A9 247 aa8.94□□□□□ -0.98
HMGB3P31-201ENST00000413333 RIC3Q7Z5B4 369 aa8.94□□□□□ -0.98
HMGB3P31-201ENST00000413333 NUTM1Q86Y26 1132 aa8.94□□□□□ -0.98
HMGB3P31-201ENST00000413333 SPIRE2Q8WWL2 714 aa8.94□□□□□ -0.98
HMGB3P31-201ENST00000413333 LIMD1Q9UGP4 676 aa8.94□□□□□ -0.98
HMGB3P31-201ENST00000413333 RAD21O60216 631 aa8.93□□□□□ -0.98
HMGB3P31-201ENST00000413333 CD46P15529 392 aa8.93□□□□□ -0.98
HMGB3P31-201ENST00000413333 DNAJB2P25686 324 aa8.93□□□□□ -0.98
HMGB3P31-201ENST00000413333 RFC5P40937 340 aa8.93□□□□□ -0.98
HMGB3P31-201ENST00000413333 CSPP1Q1MSJ5 1256 aa8.93□□□□□ -0.98
HMGB3P31-201ENST00000413333 PACS2Q86VP3 889 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms