RNA–Protein interactions for RNA: ENST00000412272.6

HERC4-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-205ENST00000412272 VIRMAQ69YN4 1812 aaKnown RBP6.71□□□□□ -1.33
HERC4-205ENST00000412272 TNNT2P45379 298 aaPredicted RBP6.71□□□□□ -1.33
HERC4-205ENST00000412272 EP400NLQ6ZTU2 488 aa6.71□□□□□ -1.33
HERC4-205ENST00000412272 MPNDQ8N594 471 aa6.71□□□□□ -1.34
HERC4-205ENST00000412272 FHAD1B1AJZ9 1412 aa6.71□□□□□ -1.34
HERC4-205ENST00000412272 CWC22Q9HCG8 908 aaKnown RBP6.71□□□□□ -1.34
HERC4-205ENST00000412272 TERF1P54274 439 aa6.71□□□□□ -1.34
HERC4-205ENST00000412272 KIAA1211Q6ZU35 1233 aa6.71□□□□□ -1.34
HERC4-205ENST00000412272 GPATCH11Q8N954 259 aa6.71□□□□□ -1.34
HERC4-205ENST00000412272 L1TD1Q5T7N2 865 aaKnown RBP6.7□□□□□ -1.34
HERC4-205ENST00000412272 MAFGO15525 162 aa6.7□□□□□ -1.34
HERC4-205ENST00000412272 KDM5BQ9UGL1 1544 aa6.7□□□□□ -1.34
HERC4-205ENST00000412272 TCERG1O14776 1098 aaKnown RBP6.69□□□□□ -1.34
HERC4-205ENST00000412272 MTERF4Q7Z6M4 381 aaKnown RBP6.69□□□□□ -1.34
HERC4-205ENST00000412272 ZBTB9Q96C00 473 aa6.69□□□□□ -1.34
HERC4-205ENST00000412272 ZNF526Q8TF50 670 aaPredicted RBP6.69□□□□□ -1.34
HERC4-205ENST00000412272 TRIM44Q96DX7 344 aaPredicted RBP6.69□□□□□ -1.34
HERC4-205ENST00000412272 TMC1Q8TDI8 760 aa6.69□□□□□ -1.34
HERC4-205ENST00000412272 SCRIBQ14160 1630 aa6.68□□□□□ -1.34
HERC4-205ENST00000412272 ESPNB1AK53 854 aa6.68□□□□□ -1.34
HERC4-205ENST00000412272 FRAT2O75474 233 aaPredicted RBP6.68□□□□□ -1.34
HERC4-205ENST00000412272 DDX10Q13206 875 aaKnown RBP6.68□□□□□ -1.34
HERC4-205ENST00000412272 NBPF11Q86T75 865 aa6.68□□□□□ -1.34
HERC4-205ENST00000412272 CCDC94Q9BW85 323 aaPredicted RBP6.68□□□□□ -1.34
HERC4-205ENST00000412272 ARAP1Q96P48 1450 aa6.68□□□□□ -1.34
HERC4-205ENST00000412272 XRCC6P12956 609 aaKnown RBP eCLIP6.68□□□□□ -1.34
HERC4-205ENST00000412272 FAM13BQ9NYF5 915 aa6.68□□□□□ -1.34
HERC4-205ENST00000412272 CGNQ9P2M7 1197 aaKnown RBP6.68□□□□□ -1.34
HERC4-205ENST00000412272 NBPF1Q3BBV0 1214 aa6.68□□□□□ -1.34
HERC4-205ENST00000412272 RUSC2Q8N2Y8 1516 aa6.67□□□□□ -1.34
HERC4-205ENST00000412272 GOLGA6L3A6NEY3 463 aa6.67□□□□□ -1.34
HERC4-205ENST00000412272 MLECQ14165 292 aa6.66□□□□□ -1.34
HERC4-205ENST00000412272 RGL3Q3MIN7 710 aa6.66□□□□□ -1.34
HERC4-205ENST00000412272 LOC102724159A0A0B4J2E5 919 aa6.66□□□□□ -1.34
HERC4-205ENST00000412272 PWP2Q15269 919 aaKnown RBP6.66□□□□□ -1.34
HERC4-205ENST00000412272 BACH2Q9BYV9 841 aa6.66□□□□□ -1.34
HERC4-205ENST00000412272 CCNB3Q8WWL7 1395 aa6.66□□□□□ -1.34
HERC4-205ENST00000412272 FSD2A1L4K1 749 aa6.66□□□□□ -1.34
HERC4-205ENST00000412272 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.66□□□□□ -1.34
HERC4-205ENST00000412272 POGKQ9P215 609 aa6.66□□□□□ -1.34
HERC4-205ENST00000412272 RAB3GAP2Q9H2M9 1393 aa6.65□□□□□ -1.34
HERC4-205ENST00000412272 TTC36A6NLP5 189 aa6.65□□□□□ -1.34
HERC4-205ENST00000412272 HSP90AB3PQ58FF7 597 aa6.65□□□□□ -1.34
HERC4-205ENST00000412272 STK26Q9P289 416 aa6.65□□□□□ -1.34
HERC4-205ENST00000412272 SETD5Q9C0A6 1442 aa6.65□□□□□ -1.34
HERC4-205ENST00000412272 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.65□□□□□ -1.343e-7■■■□□ 17.8
HERC4-205ENST00000412272 BANK1Q8NDB2 785 aa6.65□□□□□ -1.34
HERC4-205ENST00000412272 BORCS6Q96GS4 357 aa6.65□□□□□ -1.34
HERC4-205ENST00000412272 CNTLNQ9NXG0 1405 aa6.65□□□□□ -1.35
HERC4-205ENST00000412272 ZNF500O60304 480 aaPredicted RBP6.65□□□□□ -1.35
HERC4-205ENST00000412272 SIRT1Q96EB6 747 aa6.65□□□□□ -1.35
HERC4-205ENST00000412272 PANK2Q9BZ23 570 aa6.65□□□□□ -1.35
HERC4-205ENST00000412272 CT47A1Q5JQC4 288 aaPredicted RBP6.64□□□□□ -1.35
HERC4-205ENST00000412272 RNF217Q8TC41 542 aa6.64□□□□□ -1.35
HERC4-205ENST00000412272 HNRNPUQ00839 825 aaKnown RBP eCLIP6.64□□□□□ -1.35
HERC4-205ENST00000412272 OFD1O75665 1012 aa6.64□□□□□ -1.35
HERC4-205ENST00000412272 CAPN2P17655 700 aa6.63□□□□□ -1.35
HERC4-205ENST00000412272 CFAP43Q8NDM7 1665 aa6.63□□□□□ -1.35
HERC4-205ENST00000412272 CECR2Q9BXF3 1484 aa6.63□□□□□ -1.35
HERC4-205ENST00000412272 TULP2O00295 520 aa6.63□□□□□ -1.35
HERC4-205ENST00000412272 CCDC144AA2RUR9 1427 aa6.63□□□□□ -1.35
HERC4-205ENST00000412272 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.62□□□□□ -1.35
HERC4-205ENST00000412272 SATB1Q01826 763 aa6.62□□□□□ -1.35
HERC4-205ENST00000412272 PLEKHD1A6NEE1 506 aa6.62□□□□□ -1.35
HERC4-205ENST00000412272 MAP2K1Q02750 393 aaPredicted RBP6.62□□□□□ -1.35
HERC4-205ENST00000412272 LMOD3Q0VAK6 560 aa6.62□□□□□ -1.35
HERC4-205ENST00000412272 NBPF9Q3BBW0 867 aa6.62□□□□□ -1.35
HERC4-205ENST00000412272 KCNJ4P48050 445 aa6.61□□□□□ -1.35
HERC4-205ENST00000412272 PDE4AP27815 886 aa6.61□□□□□ -1.35
HERC4-205ENST00000412272 NBPF10Q6P3W6 841 aaKnown RBP6.61□□□□□ -1.35
HERC4-205ENST00000412272 OTUD6BQ8N6M0 293 aa6.61□□□□□ -1.35
HERC4-205ENST00000412272 RAI14Q9P0K7 980 aa6.61□□□□□ -1.35
HERC4-205ENST00000412272 ZMYM4Q5VZL5 1548 aa6.6□□□□□ -1.35
HERC4-205ENST00000412272 TIAM1Q13009 1591 aa6.6□□□□□ -1.35
HERC4-205ENST00000412272 TRIM6-TRIM34B2RNG4 842 aa6.6□□□□□ -1.35
HERC4-205ENST00000412272 GOLIM4O00461 696 aa6.6□□□□□ -1.35
HERC4-205ENST00000412272 DNAJC14Q6Y2X3 702 aaPredicted RBP6.6□□□□□ -1.35
HERC4-205ENST00000412272 TMTC2Q8N394 836 aa6.6□□□□□ -1.35
HERC4-205ENST00000412272 TRIM34Q9BYJ4 488 aa6.6□□□□□ -1.35
HERC4-205ENST00000412272 CEP83Q9Y592 693 aa6.6□□□□□ -1.35
HERC4-205ENST00000412272 DYNC1I1O14576 645 aa6.6□□□□□ -1.35
HERC4-205ENST00000412272 CCDC27Q2M243 656 aa6.6□□□□□ -1.35
HERC4-205ENST00000412272 SGSM3Q96HU1 749 aa6.6□□□□□ -1.35
HERC4-205ENST00000412272 NUDCQ9Y266 331 aa6.6□□□□□ -1.35
HERC4-205ENST00000412272 BRPF1P55201 1214 aaPredicted RBP6.59□□□□□ -1.35
HERC4-205ENST00000412272 FAM9BQ8IZU0 186 aa6.59□□□□□ -1.35
HERC4-205ENST00000412272 EFCC1Q9HA90 598 aa6.59□□□□□ -1.35
HERC4-205ENST00000412272 SCAPERQ9BY12 1400 aa6.59□□□□□ -1.35
HERC4-205ENST00000412272 RAPGEF2Q9Y4G8 1499 aa6.59□□□□□ -1.36
HERC4-205ENST00000412272 NCOA1Q15788 1441 aa6.59□□□□□ -1.36
HERC4-205ENST00000412272 MYOM3Q5VTT5 1437 aa6.59□□□□□ -1.36
HERC4-205ENST00000412272 BIVM-ERCC5R4GMW8 1640 aa6.58□□□□□ -1.36
HERC4-205ENST00000412272 CCDC96Q2M329 555 aa6.58□□□□□ -1.36
HERC4-205ENST00000412272 FAM50AQ14320 339 aaKnown RBP6.58□□□□□ -1.36
HERC4-205ENST00000412272 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.58□□□□□ -1.36
HERC4-205ENST00000412272 ISY1Q9ULR0 285 aaKnown RBP6.58□□□□□ -1.36
HERC4-205ENST00000412272 PRXQ9BXM0 1461 aa6.58□□□□□ -1.36
HERC4-205ENST00000412272 CTTNBP2Q8WZ74 1663 aa6.58□□□□□ -1.36
HERC4-205ENST00000412272 AKNAQ7Z591 1439 aa6.57□□□□□ -1.36
HERC4-205ENST00000412272 INSRP06213 1382 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms