RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 MRPL50Q8N5N7 158 aaKnown RBP11.72□□□□□ -0.53
CLK1-203ENST00000409769 WDR70Q9NW82 654 aa11.72□□□□□ -0.53
CLK1-203ENST00000409769 GOLGA8CPA6NN73 597 aa11.71□□□□□ -0.53
CLK1-203ENST00000409769 SPDYE16A6NNV3 312 aaPredicted RBP11.71□□□□□ -0.53
CLK1-203ENST00000409769 PDIA6Q15084 440 aa11.7□□□□□ -0.54
CLK1-203ENST00000409769 E2F4Q16254 413 aa11.7□□□□□ -0.54
CLK1-203ENST00000409769 RABGEF1Q9UJ41 708 aa11.69□□□□□ -0.54
CLK1-203ENST00000409769 ARIH1Q9Y4X5 557 aaPredicted RBP11.69□□□□□ -0.54
CLK1-203ENST00000409769 ONECUT3O60422 494 aaPredicted RBP11.68□□□□□ -0.54
CLK1-203ENST00000409769 PLA2G2EQ9NZK7 142 aa11.67□□□□□ -0.54
CLK1-203ENST00000409769 C6orf132Q5T0Z8 1188 aa11.65□□□□□ -0.54
CLK1-203ENST00000409769 WNT2BQ93097 391 aa11.64□□□□□ -0.55
CLK1-203ENST00000409769 COL9A1P20849 921 aa11.63□□□□□ -0.55
CLK1-203ENST00000409769 THSD4Q6ZMP0 1018 aa11.63□□□□□ -0.55
CLK1-203ENST00000409769 LAPTM4BQ86VI4 370 aa11.63□□□□□ -0.55
CLK1-203ENST00000409769 DDX12PQ92771 950 aa11.62□□□□□ -0.55
CLK1-203ENST00000409769 PTPN5P54829 565 aa11.6□□□□□ -0.55
CLK1-203ENST00000409769 EN1Q05925 392 aaPredicted RBP11.6□□□□□ -0.55
CLK1-203ENST00000409769 NBR1Q14596 966 aa11.6□□□□□ -0.55
CLK1-203ENST00000409769 PROX2Q3B8N5 592 aa11.6□□□□□ -0.55
CLK1-203ENST00000409769 ANKK1Q8NFD2 765 aa11.58□□□□□ -0.56
CLK1-203ENST00000409769 TRIM6-TRIM34B2RNG4 842 aa11.57□□□□□ -0.56
CLK1-203ENST00000409769 MAP3K7O43318 606 aa11.57□□□□□ -0.56
CLK1-203ENST00000409769 RBM33Q96EV2 1170 aaKnown RBP11.57□□□□□ -0.56
CLK1-203ENST00000409769 CERKQ8TCT0 537 aa11.56□□□□□ -0.56
CLK1-203ENST00000409769 KIAA1468Q9P260 1216 aa11.56□□□□□ -0.56
CLK1-203ENST00000409769 IFFO2Q5TF58 517 aa11.54□□□□□ -0.56
CLK1-203ENST00000409769 NYAP1Q6ZVC0 841 aa11.52□□□□□ -0.57
CLK1-203ENST00000409769 PACS2Q86VP3 889 aa11.51□□□□□ -0.57
CLK1-203ENST00000409769 ZFRQ96KR1 1074 aaKnown RBP11.51□□□□□ -0.57
CLK1-203ENST00000409769 SOWAHBA6NEL2 793 aa11.5□□□□□ -0.57
CLK1-203ENST00000409769 FAM98CQ17RN3 349 aaKnown RBP11.5□□□□□ -0.57
CLK1-203ENST00000409769 GRXCR2A6NFK2 248 aa11.49□□□□□ -0.57
CLK1-203ENST00000409769 TSR1Q2NL82 804 aaKnown RBP11.49□□□□□ -0.57
CLK1-203ENST00000409769 ARHGEF1Q92888 912 aaKnown RBP11.47□□□□□ -0.57
CLK1-203ENST00000409769 SEPT9Q9UHD8 586 aaPredicted RBP11.46□□□□□ -0.57
CLK1-203ENST00000409769 PRSS12P56730 875 aa11.45□□□□□ -0.58
CLK1-203ENST00000409769 CDCA7LQ96GN5 454 aa11.45□□□□□ -0.58
CLK1-203ENST00000409769 RBM27Q9P2N5 1060 aaKnown RBP11.45□□□□□ -0.58
CLK1-203ENST00000409769 RGS20O76081 388 aa11.44□□□□□ -0.58
CLK1-203ENST00000409769 OSBPP22059 807 aa11.44□□□□□ -0.58
CLK1-203ENST00000409769 TSHZ2Q9NRE2 1034 aa11.44□□□□□ -0.58
CLK1-203ENST00000409769 TSKSQ9UJT2 592 aa11.44□□□□□ -0.58
CLK1-203ENST00000409769 BCAMP50895 628 aa11.43□□□□□ -0.58
CLK1-203ENST00000409769 LRCH3Q96II8 777 aa11.43□□□□□ -0.58
CLK1-203ENST00000409769 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.42□□□□□ -0.58
CLK1-203ENST00000409769 NBPF26B4DH59 902 aa11.41□□□□□ -0.58
CLK1-203ENST00000409769 ITGBL1O95965 494 aaPredicted RBP11.4□□□□□ -0.58
CLK1-203ENST00000409769 P3H3Q8IVL6 736 aa11.4□□□□□ -0.58
CLK1-203ENST00000409769 TSR3Q9UJK0 312 aaKnown RBP11.4□□□□□ -0.58
CLK1-203ENST00000409769 PRIM1P49642 420 aaKnown RBP11.39□□□□□ -0.59
CLK1-203ENST00000409769 WBP1LQ9NX94 342 aa11.37□□□□□ -0.59
CLK1-203ENST00000409769 A0A0G2JS52 829 aa11.36□□□□□ -0.59
CLK1-203ENST00000409769 KCNV2Q8TDN2 545 aa11.36□□□□□ -0.59
CLK1-203ENST00000409769 TATDN2Q93075 761 aa11.36□□□□□ -0.59
CLK1-203ENST00000409769 CDHR5Q9HBB8 845 aa11.35□□□□□ -0.59
CLK1-203ENST00000409769 HPS5Q9UPZ3 1129 aa11.35□□□□□ -0.59
CLK1-203ENST00000409769 HDGFP51858 240 aaKnown RBP11.34□□□□□ -0.59
CLK1-203ENST00000409769 PNMA3Q9UL41 463 aa11.34□□□□□ -0.59
CLK1-203ENST00000409769 NECTIN2Q92692 538 aa11.33□□□□□ -0.6
CLK1-203ENST00000409769 FAM198AQ9UFP1 575 aa11.33□□□□□ -0.6
CLK1-203ENST00000409769 PPP4CP60510 307 aa11.32□□□□□ -0.6
CLK1-203ENST00000409769 TTC13Q8NBP0 860 aa11.31□□□□□ -0.6
CLK1-203ENST00000409769 SMAPO00193 183 aa11.3□□□□□ -0.6
CLK1-203ENST00000409769 KCNC4Q03721 635 aa11.3□□□□□ -0.6
CLK1-203ENST00000409769 SAMD7Q7Z3H4 446 aa11.3□□□□□ -0.6
CLK1-203ENST00000409769 NPDC1Q9NQX5 325 aaPredicted RBP11.3□□□□□ -0.6
CLK1-203ENST00000409769 NUDT18Q6ZVK8 323 aa11.29□□□□□ -0.6
CLK1-203ENST00000409769 PLCB2Q00722 1185 aa11.28□□□□□ -0.6
CLK1-203ENST00000409769 MLLT3P42568 568 aaPredicted RBP11.27□□□□□ -0.61
CLK1-203ENST00000409769 PADI6Q6TGC4 694 aa11.27□□□□□ -0.61
CLK1-203ENST00000409769 SLC4A3P48751 1232 aa11.26□□□□□ -0.61
CLK1-203ENST00000409769 SLF2Q8IX21 1173 aa11.23□□□□□ -0.61
CLK1-203ENST00000409769 C3orf80F5H4A9 247 aa11.22□□□□□ -0.61
CLK1-203ENST00000409769 PTGDRQ13258 359 aa11.22□□□□□ -0.61
CLK1-203ENST00000409769 RNF40O75150 1001 aa11.19□□□□□ -0.62
CLK1-203ENST00000409769 EYA1Q99502 592 aa11.18□□□□□ -0.62
CLK1-203ENST00000409769 IL21Q9HBE4 155 aa11.18□□□□□ -0.62
CLK1-203ENST00000409769 SWT1Q5T5J6 900 aaKnown RBP11.17□□□□□ -0.62
CLK1-203ENST00000409769 SMYD5Q6GMV2 418 aa11.17□□□□□ -0.62
CLK1-203ENST00000409769 RBM46Q8TBY0 533 aaKnown RBP11.17□□□□□ -0.62
CLK1-203ENST00000409769 PRR14Q9BWN1 585 aa11.17□□□□□ -0.62
CLK1-203ENST00000409769 NUTM2FA1L443 756 aa11.16□□□□□ -0.62
CLK1-203ENST00000409769 TJAP1Q5JTD0 557 aa11.16□□□□□ -0.62
CLK1-203ENST00000409769 IRX2Q9BZI1 471 aaPredicted RBP11.16□□□□□ -0.62
CLK1-203ENST00000409769 SEMA3EO15041 775 aa11.15□□□□□ -0.62
CLK1-203ENST00000409769 FCHSD2O94868 740 aa11.15□□□□□ -0.62
CLK1-203ENST00000409769 DNAJB2P25686 324 aa11.15□□□□□ -0.62
CLK1-203ENST00000409769 MTRQ99707 1265 aa11.15□□□□□ -0.62
CLK1-203ENST00000409769 APLP1P51693 650 aa11.11□□□□□ -0.63
CLK1-203ENST00000409769 ADGRG1Q9Y653 693 aa11.11□□□□□ -0.63
CLK1-203ENST00000409769 TESPA1A2RU30 521 aaPredicted RBP11.1□□□□□ -0.63
CLK1-203ENST00000409769 HIC1Q14526 733 aa11.09□□□□□ -0.63
CLK1-203ENST00000409769 TMEM134Q9H6X4 195 aa11.09□□□□□ -0.63
CLK1-203ENST00000409769 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.07□□□□□ -0.64
CLK1-203ENST00000409769 OATP04181 439 aa11.07□□□□□ -0.64
CLK1-203ENST00000409769 HAP1P54257 671 aaPredicted RBP11.07□□□□□ -0.64
CLK1-203ENST00000409769 RCCD1A6NED2 376 aa11.05□□□□□ -0.64
CLK1-203ENST00000409769 GGCXP38435 758 aa11.05□□□□□ -0.64
CLK1-203ENST00000409769 KMT5BQ4FZB7 885 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms