RNA–Protein interactions for RNA: ENST00000390467.3

TRAV40-201, Transcript of T cell receptor alpha variable 40, humanhuman

APPRIS P1 BASIC

Gene TRAV40, Length 317 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40-201ENST00000390467 ZBED2Q9BTP6 218 aa9.47□□□□□ -0.89
TRAV40-201ENST00000390467 VPS9D1Q9Y2B5 631 aa9.46□□□□□ -0.9
TRAV40-201ENST00000390467 PRIM1P49642 420 aaKnown RBP9.45□□□□□ -0.9
TRAV40-201ENST00000390467 NBR1Q14596 966 aa9.45□□□□□ -0.9
TRAV40-201ENST00000390467 RBM33Q96EV2 1170 aaKnown RBP9.45□□□□□ -0.9
TRAV40-201ENST00000390467 EPAS1Q99814 870 aa9.45□□□□□ -0.9
TRAV40-201ENST00000390467 PPP1R3GB7ZBB8 358 aa9.43□□□□□ -0.9
TRAV40-201ENST00000390467 HAP1P54257 671 aaPredicted RBP9.43□□□□□ -0.9
TRAV40-201ENST00000390467 SLC4A5Q9BY07 1137 aa9.43□□□□□ -0.9
TRAV40-201ENST00000390467 EN1Q05925 392 aaPredicted RBP9.42□□□□□ -0.9
TRAV40-201ENST00000390467 GRXCR2A6NFK2 248 aa9.41□□□□□ -0.9
TRAV40-201ENST00000390467 TSR1Q2NL82 804 aaKnown RBP9.41□□□□□ -0.9
TRAV40-201ENST00000390467 PROX2Q3B8N5 592 aa9.41□□□□□ -0.9
TRAV40-201ENST00000390467 C6orf132Q5T0Z8 1188 aa9.41□□□□□ -0.9
TRAV40-201ENST00000390467 ARHGEF1Q92888 912 aaKnown RBP9.4□□□□□ -0.9
TRAV40-201ENST00000390467 BHMG1C9JSJ3 638 aaPredicted RBP9.39□□□□□ -0.91
TRAV40-201ENST00000390467 MAP3K7O43318 606 aa9.39□□□□□ -0.91
TRAV40-201ENST00000390467 OSBPP22059 807 aa9.38□□□□□ -0.91
TRAV40-201ENST00000390467 MLLT3P42568 568 aaPredicted RBP9.37□□□□□ -0.91
TRAV40-201ENST00000390467 KDM2AQ9Y2K7 1162 aa9.37□□□□□ -0.91
TRAV40-201ENST00000390467 CDHR5Q9HBB8 845 aa9.36□□□□□ -0.91
TRAV40-201ENST00000390467 P3H3Q8IVL6 736 aa9.35□□□□□ -0.91
TRAV40-201ENST00000390467 KCTD12Q96CX2 325 aaKnown RBP9.34□□□□□ -0.91
TRAV40-201ENST00000390467 RABGEF1Q9UJ41 708 aa9.33□□□□□ -0.92
TRAV40-201ENST00000390467 MRPL50Q8N5N7 158 aaKnown RBP9.32□□□□□ -0.92
TRAV40-201ENST00000390467 STAC3Q96MF2 364 aa9.32□□□□□ -0.92
TRAV40-201ENST00000390467 TRIM6-TRIM34B2RNG4 842 aa9.31□□□□□ -0.92
TRAV40-201ENST00000390467 NBPF3Q9H094 633 aa9.31□□□□□ -0.92
TRAV40-201ENST00000390467 KIAA1468Q9P260 1216 aa9.31□□□□□ -0.92
TRAV40-201ENST00000390467 SEMA3EO15041 775 aa9.3□□□□□ -0.92
TRAV40-201ENST00000390467 TSKSQ9UJT2 592 aa9.3□□□□□ -0.92
TRAV40-201ENST00000390467 FAM198AQ9UFP1 575 aa9.29□□□□□ -0.92
TRAV40-201ENST00000390467 SEPT9Q9UHD8 586 aaPredicted RBP9.29□□□□□ -0.92
TRAV40-201ENST00000390467 C3orf80F5H4A9 247 aa9.27□□□□□ -0.93
TRAV40-201ENST00000390467 CDCA7LQ96GN5 454 aa9.27□□□□□ -0.93
TRAV40-201ENST00000390467 HCSTQ9UBK5 93 aa9.27□□□□□ -0.93
TRAV40-201ENST00000390467 ONECUT3O60422 494 aaPredicted RBP9.26□□□□□ -0.93
TRAV40-201ENST00000390467 PRSS12P56730 875 aa9.26□□□□□ -0.93
TRAV40-201ENST00000390467 THSD4Q6ZMP0 1018 aa9.26□□□□□ -0.93
TRAV40-201ENST00000390467 WNT2BQ93097 391 aa9.26□□□□□ -0.93
TRAV40-201ENST00000390467 NPDC1Q9NQX5 325 aaPredicted RBP9.26□□□□□ -0.93
TRAV40-201ENST00000390467 GOLGA8CPA6NN73 597 aa9.25□□□□□ -0.93
TRAV40-201ENST00000390467 PTPN5P54829 565 aa9.24□□□□□ -0.93
TRAV40-201ENST00000390467 LAPTM4BQ86VI4 370 aa9.23□□□□□ -0.93
TRAV40-201ENST00000390467 CERKQ8TCT0 537 aa9.23□□□□□ -0.93
TRAV40-201ENST00000390467 TESPA1A2RU30 521 aaPredicted RBP9.22□□□□□ -0.93
TRAV40-201ENST00000390467 SMAPO00193 183 aa9.22□□□□□ -0.93
TRAV40-201ENST00000390467 BCAMP50895 628 aa9.22□□□□□ -0.93
TRAV40-201ENST00000390467 VSIG10Q8N0Z9 540 aa9.22□□□□□ -0.93
TRAV40-201ENST00000390467 ZFRQ96KR1 1074 aaKnown RBP9.22□□□□□ -0.93
TRAV40-201ENST00000390467 FAM98CQ17RN3 349 aaKnown RBP9.21□□□□□ -0.94
TRAV40-201ENST00000390467 PADI6Q6TGC4 694 aa9.21□□□□□ -0.94
TRAV40-201ENST00000390467 ANKK1Q8NFD2 765 aa9.21□□□□□ -0.94
TRAV40-201ENST00000390467 PACS2Q86VP3 889 aa9.2□□□□□ -0.94
TRAV40-201ENST00000390467 TTC13Q8NBP0 860 aa9.2□□□□□ -0.94
TRAV40-201ENST00000390467 RBM27Q9P2N5 1060 aaKnown RBP9.2□□□□□ -0.94
TRAV40-201ENST00000390467 PTGDRQ13258 359 aa9.19□□□□□ -0.94
TRAV40-201ENST00000390467 NUTM2FA1L443 756 aa9.17□□□□□ -0.94
TRAV40-201ENST00000390467 SOWAHBA6NEL2 793 aa9.17□□□□□ -0.94
TRAV40-201ENST00000390467 NBPF26B4DH59 902 aa9.17□□□□□ -0.94
TRAV40-201ENST00000390467 TATDN2Q93075 761 aa9.17□□□□□ -0.94
TRAV40-201ENST00000390467 PNMA3Q9UL41 463 aa9.17□□□□□ -0.94
TRAV40-201ENST00000390467 RBM26Q5T8P6 1007 aaKnown RBP9.16□□□□□ -0.94
TRAV40-201ENST00000390467 NUDT18Q6ZVK8 323 aa9.16□□□□□ -0.94
TRAV40-201ENST00000390467 PLA2G2EQ9NZK7 142 aa9.15□□□□□ -0.94
TRAV40-201ENST00000390467 SAMD7Q7Z3H4 446 aa9.13□□□□□ -0.95
TRAV40-201ENST00000390467 LRCH3Q96II8 777 aa9.13□□□□□ -0.95
TRAV40-201ENST00000390467 WBP1LQ9NX94 342 aa9.13□□□□□ -0.95
TRAV40-201ENST00000390467 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.13□□□□□ -0.95
TRAV40-201ENST00000390467 GPR37O15354 613 aa9.12□□□□□ -0.95
TRAV40-201ENST00000390467 FAM161AQ3B820 660 aa9.11□□□□□ -0.95
TRAV40-201ENST00000390467 HPS5Q9UPZ3 1129 aa9.11□□□□□ -0.95
TRAV40-201ENST00000390467 FCHSD2O94868 740 aa9.1□□□□□ -0.95
TRAV40-201ENST00000390467 EYA1Q99502 592 aa9.1□□□□□ -0.95
TRAV40-201ENST00000390467 SMYD5Q6GMV2 418 aa9.08□□□□□ -0.96
TRAV40-201ENST00000390467 TSR3Q9UJK0 312 aaKnown RBP9.08□□□□□ -0.96
TRAV40-201ENST00000390467 ADGRG1Q9Y653 693 aa9.08□□□□□ -0.96
TRAV40-201ENST00000390467 FECHP22830 423 aa9.07□□□□□ -0.96
TRAV40-201ENST00000390467 SWT1Q5T5J6 900 aaKnown RBP9.06□□□□□ -0.96
TRAV40-201ENST00000390467 RNF40O75150 1001 aa9.05□□□□□ -0.96
TRAV40-201ENST00000390467 HIC1Q14526 733 aa9.04□□□□□ -0.96
TRAV40-201ENST00000390467 ITGBL1O95965 494 aaPredicted RBP9.03□□□□□ -0.96
TRAV40-201ENST00000390467 NYAP1Q6ZVC0 841 aa9.03□□□□□ -0.96
TRAV40-201ENST00000390467 PPP4CP60510 307 aa9.02□□□□□ -0.97
TRAV40-201ENST00000390467 GPIHBP1Q8IV16 184 aa9.02□□□□□ -0.97
TRAV40-201ENST00000390467 GNPATO15228 680 aa9.01□□□□□ -0.97
TRAV40-201ENST00000390467 RBM46Q8TBY0 533 aaKnown RBP9.01□□□□□ -0.97
TRAV40-201ENST00000390467 RCCD1A6NED2 376 aa9□□□□□ -0.97
TRAV40-201ENST00000390467 DNAJB2P25686 324 aa9□□□□□ -0.97
TRAV40-201ENST00000390467 APLP1P51693 650 aa9□□□□□ -0.97
TRAV40-201ENST00000390467 IFFO2Q5TF58 517 aa9□□□□□ -0.97
TRAV40-201ENST00000390467 PXYLP1Q8TE99 480 aa9□□□□□ -0.97
TRAV40-201ENST00000390467 TMEM134Q9H6X4 195 aa9□□□□□ -0.97
TRAV40-201ENST00000390467 METTL3Q86U44 580 aaKnown RBP8.98□□□□□ -0.97
TRAV40-201ENST00000390467 SLF2Q8IX21 1173 aa8.98□□□□□ -0.97
TRAV40-201ENST00000390467 HDGFP51858 240 aaKnown RBP8.97□□□□□ -0.97
TRAV40-201ENST00000390467 A0A0G2JS52 829 aa8.96□□□□□ -0.98
TRAV40-201ENST00000390467 NLRP7Q8WX94 980 aa8.96□□□□□ -0.98
TRAV40-201ENST00000390467 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.95□□□□□ -0.98
TRAV40-201ENST00000390467 TJAP1Q5JTD0 557 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms