RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 PHF14O94880 888 aa11.62□□□□□ -0.55
RNU4-28P-201ENST00000364739 ZDHHC16Q969W1 377 aa11.62□□□□□ -0.55
RNU4-28P-201ENST00000364739 RBM33Q96EV2 1170 aaKnown RBP11.62□□□□□ -0.55
RNU4-28P-201ENST00000364739 PRIM1P49642 420 aaKnown RBP11.61□□□□□ -0.55
RNU4-28P-201ENST00000364739 PSEN2P49810 448 aa11.61□□□□□ -0.55
RNU4-28P-201ENST00000364739 NBR1Q14596 966 aa11.61□□□□□ -0.55
RNU4-28P-201ENST00000364739 DMRTA1Q5VZB9 504 aa11.61□□□□□ -0.55
RNU4-28P-201ENST00000364739 TYW1BQ6NUM6 668 aa11.59□□□□□ -0.55
RNU4-28P-201ENST00000364739 KCNK17Q96T54 332 aa11.58□□□□□ -0.56
RNU4-28P-201ENST00000364739 OSBPP22059 807 aa11.57□□□□□ -0.56
RNU4-28P-201ENST00000364739 KCNH8Q96L42 1107 aa11.57□□□□□ -0.56
RNU4-28P-201ENST00000364739 EPAS1Q99814 870 aa11.56□□□□□ -0.56
RNU4-28P-201ENST00000364739 BCL2L12Q9HB09 334 aa11.56□□□□□ -0.56
RNU4-28P-201ENST00000364739 TSR1Q2NL82 804 aaKnown RBP11.54□□□□□ -0.56
RNU4-28P-201ENST00000364739 FBXW7Q969H0 707 aa11.54□□□□□ -0.56
RNU4-28P-201ENST00000364739 MAP3K7O43318 606 aa11.53□□□□□ -0.56
RNU4-28P-201ENST00000364739 C6orf132Q5T0Z8 1188 aa11.53□□□□□ -0.56
RNU4-28P-201ENST00000364739 STAC3Q96MF2 364 aa11.53□□□□□ -0.56
RNU4-28P-201ENST00000364739 TESPA1A2RU30 521 aaPredicted RBP11.52□□□□□ -0.57
RNU4-28P-201ENST00000364739 COL9A1P20849 921 aa11.52□□□□□ -0.57
RNU4-28P-201ENST00000364739 PTPREP23469 700 aa11.52□□□□□ -0.57
RNU4-28P-201ENST00000364739 EN1Q05925 392 aaPredicted RBP11.52□□□□□ -0.57
RNU4-28P-201ENST00000364739 KCTD12Q96CX2 325 aaKnown RBP11.5□□□□□ -0.57
RNU4-28P-201ENST00000364739 CDHR5Q9HBB8 845 aa11.49□□□□□ -0.57
RNU4-28P-201ENST00000364739 VPS9D1Q9Y2B5 631 aa11.49□□□□□ -0.57
RNU4-28P-201ENST00000364739 RBM26Q5T8P6 1007 aaKnown RBP11.48□□□□□ -0.57
RNU4-28P-201ENST00000364739 SLC4A5Q9BY07 1137 aa11.48□□□□□ -0.57
RNU4-28P-201ENST00000364739 PROX2Q3B8N5 592 aa11.44□□□□□ -0.58
RNU4-28P-201ENST00000364739 ZBED2Q9BTP6 218 aa11.43□□□□□ -0.58
RNU4-28P-201ENST00000364739 NUTM2FA1L443 756 aa11.42□□□□□ -0.58
RNU4-28P-201ENST00000364739 PPP1R3GB7ZBB8 358 aa11.42□□□□□ -0.58
RNU4-28P-201ENST00000364739 SMYD5Q6GMV2 418 aa11.41□□□□□ -0.58
RNU4-28P-201ENST00000364739 NPDC1Q9NQX5 325 aaPredicted RBP11.41□□□□□ -0.58
RNU4-28P-201ENST00000364739 BHMG1C9JSJ3 638 aaPredicted RBP11.39□□□□□ -0.59
RNU4-28P-201ENST00000364739 IFFO2Q5TF58 517 aa11.37□□□□□ -0.59
RNU4-28P-201ENST00000364739 PTPN5P54829 565 aa11.36□□□□□ -0.59
RNU4-28P-201ENST00000364739 THSD4Q6ZMP0 1018 aa11.35□□□□□ -0.59
RNU4-28P-201ENST00000364739 CDCA7LQ96GN5 454 aa11.35□□□□□ -0.59
RNU4-28P-201ENST00000364739 KIAA1468Q9P260 1216 aa11.35□□□□□ -0.59
RNU4-28P-201ENST00000364739 FAM198AQ9UFP1 575 aa11.35□□□□□ -0.59
RNU4-28P-201ENST00000364739 TSKSQ9UJT2 592 aa11.35□□□□□ -0.59
RNU4-28P-201ENST00000364739 PRSS12P56730 875 aa11.34□□□□□ -0.59
RNU4-28P-201ENST00000364739 PTGDRQ13258 359 aa11.34□□□□□ -0.59
RNU4-28P-201ENST00000364739 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.34□□□□□ -0.59
RNU4-28P-201ENST00000364739 GOLGA8CPA6NN73 597 aa11.33□□□□□ -0.6
RNU4-28P-201ENST00000364739 TRIM6-TRIM34B2RNG4 842 aa11.33□□□□□ -0.6
RNU4-28P-201ENST00000364739 RGS20O76081 388 aa11.33□□□□□ -0.6
RNU4-28P-201ENST00000364739 C3orf80F5H4A9 247 aa11.32□□□□□ -0.6
RNU4-28P-201ENST00000364739 MRPL50Q8N5N7 158 aaKnown RBP11.32□□□□□ -0.6
RNU4-28P-201ENST00000364739 NBPF3Q9H094 633 aa11.32□□□□□ -0.6
RNU4-28P-201ENST00000364739 PADI6Q6TGC4 694 aa11.31□□□□□ -0.6
RNU4-28P-201ENST00000364739 CERKQ8TCT0 537 aa11.31□□□□□ -0.6
RNU4-28P-201ENST00000364739 WNT2BQ93097 391 aa11.31□□□□□ -0.6
RNU4-28P-201ENST00000364739 TULP1O00294 542 aaPredicted RBP11.3□□□□□ -0.6
RNU4-28P-201ENST00000364739 RABGEF1Q9UJ41 708 aa11.3□□□□□ -0.6
RNU4-28P-201ENST00000364739 SMAPO00193 183 aa11.29□□□□□ -0.6
RNU4-28P-201ENST00000364739 FECHP22830 423 aa11.29□□□□□ -0.6
RNU4-28P-201ENST00000364739 LMOD2Q6P5Q4 547 aa11.29□□□□□ -0.6
RNU4-28P-201ENST00000364739 GPIHBP1Q8IV16 184 aa11.29□□□□□ -0.6
RNU4-28P-201ENST00000364739 SEPT9Q9UHD8 586 aaPredicted RBP11.29□□□□□ -0.6
RNU4-28P-201ENST00000364739 FCHSD2O94868 740 aa11.28□□□□□ -0.6
RNU4-28P-201ENST00000364739 FAM161AQ3B820 660 aa11.28□□□□□ -0.6
RNU4-28P-201ENST00000364739 GPR37O15354 613 aa11.27□□□□□ -0.61
RNU4-28P-201ENST00000364739 PACS2Q86VP3 889 aa11.26□□□□□ -0.61
RNU4-28P-201ENST00000364739 BCANQ96GW7 911 aa11.26□□□□□ -0.61
RNU4-28P-201ENST00000364739 ONECUT3O60422 494 aaPredicted RBP11.25□□□□□ -0.61
RNU4-28P-201ENST00000364739 NUDT18Q6ZVK8 323 aa11.24□□□□□ -0.61
RNU4-28P-201ENST00000364739 TTC13Q8NBP0 860 aa11.24□□□□□ -0.61
RNU4-28P-201ENST00000364739 TATDN2Q93075 761 aa11.24□□□□□ -0.61
RNU4-28P-201ENST00000364739 A0A0G2JS52 829 aa11.23□□□□□ -0.61
RNU4-28P-201ENST00000364739 PNMA3Q9UL41 463 aa11.23□□□□□ -0.61
RNU4-28P-201ENST00000364739 HIC1Q14526 733 aa11.22□□□□□ -0.61
RNU4-28P-201ENST00000364739 GNPATO15228 680 aa11.21□□□□□ -0.61
RNU4-28P-201ENST00000364739 RBM27Q9P2N5 1060 aaKnown RBP11.2□□□□□ -0.62
RNU4-28P-201ENST00000364739 ANKK1Q8NFD2 765 aa11.19□□□□□ -0.62
RNU4-28P-201ENST00000364739 LAPTM4BQ86VI4 370 aa11.18□□□□□ -0.62
RNU4-28P-201ENST00000364739 ZFRQ96KR1 1074 aaKnown RBP11.18□□□□□ -0.62
RNU4-28P-201ENST00000364739 NBPF26B4DH59 902 aa11.17□□□□□ -0.62
RNU4-28P-201ENST00000364739 ZC3H15Q8WU90 426 aaKnown RBP11.17□□□□□ -0.62
RNU4-28P-201ENST00000364739 ADGRG1Q9Y653 693 aa11.17□□□□□ -0.62
RNU4-28P-201ENST00000364739 FAM98CQ17RN3 349 aaKnown RBP11.16□□□□□ -0.62
RNU4-28P-201ENST00000364739 EYA1Q99502 592 aa11.16□□□□□ -0.62
RNU4-28P-201ENST00000364739 ITGBL1O95965 494 aaPredicted RBP11.15□□□□□ -0.62
RNU4-28P-201ENST00000364739 BCAMP50895 628 aa11.14□□□□□ -0.63
RNU4-28P-201ENST00000364739 IRX2Q9BZI1 471 aaPredicted RBP11.14□□□□□ -0.63
RNU4-28P-201ENST00000364739 NYAP1Q6ZVC0 841 aa11.13□□□□□ -0.63
RNU4-28P-201ENST00000364739 SOWAHBA6NEL2 793 aa11.12□□□□□ -0.63
RNU4-28P-201ENST00000364739 SAMD7Q7Z3H4 446 aa11.12□□□□□ -0.63
RNU4-28P-201ENST00000364739 NLRP7Q8WX94 980 aa11.12□□□□□ -0.63
RNU4-28P-201ENST00000364739 RBM46Q8TBY0 533 aaKnown RBP11.1□□□□□ -0.63
RNU4-28P-201ENST00000364739 ZMYND10O75800 440 aa11.09□□□□□ -0.63
RNU4-28P-201ENST00000364739 PXYLP1Q8TE99 480 aa11.09□□□□□ -0.63
RNU4-28P-201ENST00000364739 PHOX2BQ99453 314 aa11.09□□□□□ -0.63
RNU4-28P-201ENST00000364739 RCCD1A6NED2 376 aa11.08□□□□□ -0.64
RNU4-28P-201ENST00000364739 SWT1Q5T5J6 900 aaKnown RBP11.08□□□□□ -0.64
RNU4-28P-201ENST00000364739 METTL3Q86U44 580 aaKnown RBP11.08□□□□□ -0.64
RNU4-28P-201ENST00000364739 KRI1Q8N9T8 703 aaKnown RBP11.08□□□□□ -0.64
RNU4-28P-201ENST00000364739 IRF6O14896 467 aa11.07□□□□□ -0.64
RNU4-28P-201ENST00000364739 OATP04181 439 aa11.07□□□□□ -0.64
RNU4-28P-201ENST00000364739 MAP2K5Q13163 448 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms