RNA–Protein interactions for RNA: ENST00000364351.1

RNU4-40P-201, Transcript of RNA, U4 small nuclear 40, pseudogene, humanhuman

BASIC

Gene RNU4-40P, Length 143 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-40P-201ENST00000364351 COL9A1P20849 921 aa13.84□□□□□ -0.19
RNU4-40P-201ENST00000364351 WNT2BQ93097 391 aa13.84□□□□□ -0.19
RNU4-40P-201ENST00000364351 NBPF3Q9H094 633 aa13.84□□□□□ -0.19
RNU4-40P-201ENST00000364351 PROX2Q3B8N5 592 aa13.83□□□□□ -0.2
RNU4-40P-201ENST00000364351 CFAP44Q96MT7 982 aa13.83□□□□□ -0.2
RNU4-40P-201ENST00000364351 PAXIP1Q6ZW49 1069 aaPredicted RBP13.82□□□□□ -0.2
RNU4-40P-201ENST00000364351 THSD4Q6ZMP0 1018 aa13.81□□□□□ -0.2
RNU4-40P-201ENST00000364351 EPAS1Q99814 870 aa13.81□□□□□ -0.2
RNU4-40P-201ENST00000364351 DDX12PQ92771 950 aa13.8□□□□□ -0.2
RNU4-40P-201ENST00000364351 RABGEF1Q9UJ41 708 aa13.79□□□□□ -0.2
RNU4-40P-201ENST00000364351 C6orf132Q5T0Z8 1188 aa13.78□□□□□ -0.2
RNU4-40P-201ENST00000364351 RBM33Q96EV2 1170 aaKnown RBP13.78□□□□□ -0.2
RNU4-40P-201ENST00000364351 KIAA1468Q9P260 1216 aa13.74□□□□□ -0.21
RNU4-40P-201ENST00000364351 WDR70Q9NW82 654 aa13.72□□□□□ -0.21
RNU4-40P-201ENST00000364351 NBR1Q14596 966 aa13.71□□□□□ -0.21
RNU4-40P-201ENST00000364351 PDIA6Q15084 440 aa13.71□□□□□ -0.21
RNU4-40P-201ENST00000364351 E2F4Q16254 413 aa13.71□□□□□ -0.21
RNU4-40P-201ENST00000364351 ANKK1Q8NFD2 765 aa13.7□□□□□ -0.22
RNU4-40P-201ENST00000364351 SPDYE16A6NNV3 312 aaPredicted RBP13.68□□□□□ -0.22
RNU4-40P-201ENST00000364351 MAP3K7O43318 606 aa13.67□□□□□ -0.22
RNU4-40P-201ENST00000364351 ONECUT3O60422 494 aaPredicted RBP13.67□□□□□ -0.22
RNU4-40P-201ENST00000364351 LAPTM4BQ86VI4 370 aa13.67□□□□□ -0.22
RNU4-40P-201ENST00000364351 TRIM6-TRIM34B2RNG4 842 aa13.66□□□□□ -0.22
RNU4-40P-201ENST00000364351 SEPT9Q9UHD8 586 aaPredicted RBP13.66□□□□□ -0.22
RNU4-40P-201ENST00000364351 BCAMP50895 628 aa13.65□□□□□ -0.22
RNU4-40P-201ENST00000364351 EN1Q05925 392 aaPredicted RBP13.65□□□□□ -0.22
RNU4-40P-201ENST00000364351 TSR1Q2NL82 804 aaKnown RBP13.65□□□□□ -0.22
RNU4-40P-201ENST00000364351 ZFRQ96KR1 1074 aaKnown RBP13.64□□□□□ -0.23
RNU4-40P-201ENST00000364351 SOWAHBA6NEL2 793 aa13.61□□□□□ -0.23
RNU4-40P-201ENST00000364351 GRXCR2A6NFK2 248 aa13.61□□□□□ -0.23
RNU4-40P-201ENST00000364351 FAM98CQ17RN3 349 aaKnown RBP13.58□□□□□ -0.24
RNU4-40P-201ENST00000364351 IFFO2Q5TF58 517 aa13.58□□□□□ -0.24
RNU4-40P-201ENST00000364351 ARIH1Q9Y4X5 557 aaPredicted RBP13.58□□□□□ -0.24
RNU4-40P-201ENST00000364351 PACS2Q86VP3 889 aa13.57□□□□□ -0.24
RNU4-40P-201ENST00000364351 TSKSQ9UJT2 592 aa13.57□□□□□ -0.24
RNU4-40P-201ENST00000364351 PRIM1P49642 420 aaKnown RBP13.55□□□□□ -0.24
RNU4-40P-201ENST00000364351 WBP1LQ9NX94 342 aa13.54□□□□□ -0.24
RNU4-40P-201ENST00000364351 CDCA7LQ96GN5 454 aa13.53□□□□□ -0.24
RNU4-40P-201ENST00000364351 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.53□□□□□ -0.24
RNU4-40P-201ENST00000364351 A0A0G2JS52 829 aa13.51□□□□□ -0.25
RNU4-40P-201ENST00000364351 PRSS12P56730 875 aa13.51□□□□□ -0.25
RNU4-40P-201ENST00000364351 LRCH3Q96II8 777 aa13.51□□□□□ -0.25
RNU4-40P-201ENST00000364351 NYAP1Q6ZVC0 841 aa13.5□□□□□ -0.25
RNU4-40P-201ENST00000364351 SMAPO00193 183 aa13.49□□□□□ -0.25
RNU4-40P-201ENST00000364351 OSBPP22059 807 aa13.49□□□□□ -0.25
RNU4-40P-201ENST00000364351 CERKQ8TCT0 537 aa13.49□□□□□ -0.25
RNU4-40P-201ENST00000364351 HPS5Q9UPZ3 1129 aa13.49□□□□□ -0.25
RNU4-40P-201ENST00000364351 TSHZ2Q9NRE2 1034 aa13.48□□□□□ -0.25
RNU4-40P-201ENST00000364351 FAM198AQ9UFP1 575 aa13.48□□□□□ -0.25
RNU4-40P-201ENST00000364351 TSR3Q9UJK0 312 aaKnown RBP13.48□□□□□ -0.25
RNU4-40P-201ENST00000364351 CDHR5Q9HBB8 845 aa13.47□□□□□ -0.25
RNU4-40P-201ENST00000364351 ITGBL1O95965 494 aaPredicted RBP13.46□□□□□ -0.25
RNU4-40P-201ENST00000364351 RGS20O76081 388 aa13.45□□□□□ -0.26
RNU4-40P-201ENST00000364351 TATDN2Q93075 761 aa13.43□□□□□ -0.26
RNU4-40P-201ENST00000364351 PNMA3Q9UL41 463 aa13.43□□□□□ -0.26
RNU4-40P-201ENST00000364351 C3orf80F5H4A9 247 aa13.42□□□□□ -0.26
RNU4-40P-201ENST00000364351 PPP4CP60510 307 aa13.42□□□□□ -0.26
RNU4-40P-201ENST00000364351 SAMD7Q7Z3H4 446 aa13.42□□□□□ -0.26
RNU4-40P-201ENST00000364351 NBPF26B4DH59 902 aa13.41□□□□□ -0.26
RNU4-40P-201ENST00000364351 KCNC4Q03721 635 aa13.41□□□□□ -0.26
RNU4-40P-201ENST00000364351 NUDT18Q6ZVK8 323 aa13.38□□□□□ -0.27
RNU4-40P-201ENST00000364351 ARHGEF1Q92888 912 aaKnown RBP13.35□□□□□ -0.27
RNU4-40P-201ENST00000364351 HDGFP51858 240 aaKnown RBP13.34□□□□□ -0.27
RNU4-40P-201ENST00000364351 KCNV2Q8TDN2 545 aa13.34□□□□□ -0.27
RNU4-40P-201ENST00000364351 NPDC1Q9NQX5 325 aaPredicted RBP13.34□□□□□ -0.27
RNU4-40P-201ENST00000364351 RBM27Q9P2N5 1060 aaKnown RBP13.34□□□□□ -0.27
RNU4-40P-201ENST00000364351 MLLT3P42568 568 aaPredicted RBP13.33□□□□□ -0.28
RNU4-40P-201ENST00000364351 PADI6Q6TGC4 694 aa13.33□□□□□ -0.28
RNU4-40P-201ENST00000364351 IRX2Q9BZI1 471 aaPredicted RBP13.33□□□□□ -0.28
RNU4-40P-201ENST00000364351 RNF40O75150 1001 aa13.32□□□□□ -0.28
RNU4-40P-201ENST00000364351 TTC13Q8NBP0 860 aa13.29□□□□□ -0.28
RNU4-40P-201ENST00000364351 TJAP1Q5JTD0 557 aa13.26□□□□□ -0.29
RNU4-40P-201ENST00000364351 SWT1Q5T5J6 900 aaKnown RBP13.25□□□□□ -0.29
RNU4-40P-201ENST00000364351 MTRQ99707 1265 aa13.24□□□□□ -0.29
RNU4-40P-201ENST00000364351 APLP1P51693 650 aa13.21□□□□□ -0.29
RNU4-40P-201ENST00000364351 IL21Q9HBE4 155 aa13.21□□□□□ -0.29
RNU4-40P-201ENST00000364351 SLF2Q8IX21 1173 aa13.2□□□□□ -0.3
RNU4-40P-201ENST00000364351 EYA1Q99502 592 aa13.2□□□□□ -0.3
RNU4-40P-201ENST00000364351 PTGDRQ13258 359 aa13.19□□□□□ -0.3
RNU4-40P-201ENST00000364351 NUTM2FA1L443 756 aa13.18□□□□□ -0.3
RNU4-40P-201ENST00000364351 P3H3Q8IVL6 736 aa13.18□□□□□ -0.3
RNU4-40P-201ENST00000364351 ZNF516Q92618 1163 aa13.18□□□□□ -0.3
RNU4-40P-201ENST00000364351 NECTIN2Q92692 538 aa13.17□□□□□ -0.3
RNU4-40P-201ENST00000364351 SLC4A3P48751 1232 aa13.16□□□□□ -0.3
RNU4-40P-201ENST00000364351 SEMA3EO15041 775 aa13.14□□□□□ -0.31
RNU4-40P-201ENST00000364351 COPS2P61201 443 aa13.13□□□□□ -0.31
RNU4-40P-201ENST00000364351 PPP1R18Q6NYC8 613 aa13.13□□□□□ -0.31
RNU4-40P-201ENST00000364351 RBM46Q8TBY0 533 aaKnown RBP13.11□□□□□ -0.31
RNU4-40P-201ENST00000364351 DNAJB2P25686 324 aa13.1□□□□□ -0.31
RNU4-40P-201ENST00000364351 FAM161AQ3B820 660 aa13.1□□□□□ -0.31
RNU4-40P-201ENST00000364351 NKX2-3Q8TAU0 364 aa13.1□□□□□ -0.31
RNU4-40P-201ENST00000364351 ADGRG1Q9Y653 693 aa13.1□□□□□ -0.31
RNU4-40P-201ENST00000364351 PLCB2Q00722 1185 aa13.08□□□□□ -0.32
RNU4-40P-201ENST00000364351 Q6ZNB5 142 aa13.08□□□□□ -0.32
RNU4-40P-201ENST00000364351 PRKD2Q9BZL6 878 aa13.08□□□□□ -0.32
RNU4-40P-201ENST00000364351 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.08□□□□□ -0.32
RNU4-40P-201ENST00000364351 FCHSD2O94868 740 aa13.07□□□□□ -0.32
RNU4-40P-201ENST00000364351 RCCD1A6NED2 376 aa13.05□□□□□ -0.32
RNU4-40P-201ENST00000364351 PRR14Q9BWN1 585 aa13.05□□□□□ -0.32
RNU4-40P-201ENST00000364351 TMEM134Q9H6X4 195 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms