RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 MYT1LQ9UL68 1186 aa14.24□□□□□ -0.13
LIMA1-201ENST00000341247 MAST1Q9Y2H9 1570 aa14.24□□□□□ -0.13
LIMA1-201ENST00000341247 ST20-MTHFSA0A0A6YYL1 179 aa14.24□□□□□ -0.13
LIMA1-201ENST00000341247 ABCC1P33527 1531 aa14.23□□□□□ -0.13
LIMA1-201ENST00000341247 UNC13BO14795 1591 aa14.21□□□□□ -0.13
LIMA1-201ENST00000341247 KDM5CP41229 1560 aa14.21□□□□□ -0.13
LIMA1-201ENST00000341247 RSPH4AQ5TD94 716 aa14.21□□□□□ -0.13
LIMA1-201ENST00000341247 PLXNC1O60486 1568 aa14.2□□□□□ -0.14
LIMA1-201ENST00000341247 NBPF1Q3BBV0 1214 aa14.19□□□□□ -0.14
LIMA1-201ENST00000341247 EFCAB2Q5VUJ9 269 aa14.19□□□□□ -0.14
LIMA1-201ENST00000341247 TSHZ2Q9NRE2 1034 aa14.18□□□□□ -0.14
LIMA1-201ENST00000341247 ROCK2O75116 1388 aaKnown RBP14.18□□□□□ -0.14
LIMA1-201ENST00000341247 WDR7Q9Y4E6 1490 aa14.18□□□□□ -0.14
LIMA1-201ENST00000341247 CCDC144AA2RUR9 1427 aa14.17□□□□□ -0.14
LIMA1-201ENST00000341247 UHRF1BP1Q6BDS2 1440 aa14.17□□□□□ -0.14
LIMA1-201ENST00000341247 POLR1AO95602 1720 aaPredicted RBP14.17□□□□□ -0.14
LIMA1-201ENST00000341247 IQGAP3Q86VI3 1631 aa14.16□□□□□ -0.14
LIMA1-201ENST00000341247 ZFYVE16Q7Z3T8 1539 aa14.16□□□□□ -0.14
LIMA1-201ENST00000341247 ASXL2Q76L83 1435 aa14.16□□□□□ -0.14
LIMA1-201ENST00000341247 MAGI2Q86UL8 1455 aa14.15□□□□□ -0.14
LIMA1-201ENST00000341247 A2MP01023 1474 aa14.15□□□□□ -0.14
LIMA1-201ENST00000341247 RALGAPBQ86X10 1494 aa14.15□□□□□ -0.14
LIMA1-201ENST00000341247 DHX29Q7Z478 1369 aaKnown RBP14.14□□□□□ -0.15
LIMA1-201ENST00000341247 ABCA9Q8IUA7 1624 aa14.14□□□□□ -0.15
LIMA1-201ENST00000341247 DUOX2Q9NRD8 1548 aa14.14□□□□□ -0.15
LIMA1-201ENST00000341247 FANCAO15360 1455 aa14.13□□□□□ -0.15
LIMA1-201ENST00000341247 SPAG9O60271 1321 aaKnown RBP14.12□□□□□ -0.15
LIMA1-201ENST00000341247 E9PCH4 1651 aa14.11□□□□□ -0.15
LIMA1-201ENST00000341247 PRAG1Q86YV5 1406 aa14.11□□□□□ -0.15
LIMA1-201ENST00000341247 TMC1Q8TDI8 760 aa14.11□□□□□ -0.15
LIMA1-201ENST00000341247 ERBINQ96RT1 1412 aa14.1□□□□□ -0.15
LIMA1-201ENST00000341247 TRPM1Q7Z4N2 1603 aa14.1□□□□□ -0.15
LIMA1-201ENST00000341247 OSCARQ8IYS5 282 aa14.1□□□□□ -0.15
LIMA1-201ENST00000341247 SCAPERQ9BY12 1400 aa14.1□□□□□ -0.15
LIMA1-201ENST00000341247 SALL2Q9Y467 1007 aaPredicted RBP14.09□□□□□ -0.15
LIMA1-201ENST00000341247 INO80Q9ULG1 1556 aaPredicted RBP14.08□□□□□ -0.16
LIMA1-201ENST00000341247 ADGRL1O94910 1474 aa14.07□□□□□ -0.16
LIMA1-201ENST00000341247 UGGT1Q9NYU2 1555 aa14.07□□□□□ -0.16
LIMA1-201ENST00000341247 MROH1Q8NDA8 1641 aa14.07□□□□□ -0.16
LIMA1-201ENST00000341247 ATP7AQ04656 1500 aa14.07□□□□□ -0.16
LIMA1-201ENST00000341247 ATP10AO60312 1499 aa14.06□□□□□ -0.16
LIMA1-201ENST00000341247 KIF3BO15066 747 aa14.06□□□□□ -0.16
LIMA1-201ENST00000341247 ARAP3Q8WWN8 1544 aa14.06□□□□□ -0.16
LIMA1-201ENST00000341247 ZBED9Q6R2W3 1325 aa14.06□□□□□ -0.16
LIMA1-201ENST00000341247 KIDINS220Q9ULH0 1771 aa14.05□□□□□ -0.16
LIMA1-201ENST00000341247 CC2D1BQ5T0F9 858 aaKnown RBP14.05□□□□□ -0.16
LIMA1-201ENST00000341247 DEPDC5O75140 1603 aa14.05□□□□□ -0.16
LIMA1-201ENST00000341247 CLTCL1P53675 1640 aa14.03□□□□□ -0.16
LIMA1-201ENST00000341247 RTEL1-TNFRSF6BF6WH68 1400 aa14.03□□□□□ -0.16
LIMA1-201ENST00000341247 ARID4BQ4LE39 1312 aaPredicted RBP14.03□□□□□ -0.16
LIMA1-201ENST00000341247 DISP3Q9P2K9 1392 aa14.02□□□□□ -0.17
LIMA1-201ENST00000341247 PNISRQ8TF01 805 aaKnown RBP14.01□□□□□ -0.17
LIMA1-201ENST00000341247 TESK2Q96S53 571 aa14.01□□□□□ -0.17
LIMA1-201ENST00000341247 B4GALNT3Q6L9W6 998 aa14.01□□□□□ -0.17
LIMA1-201ENST00000341247 VWDEQ8N2E2 1590 aa14.01□□□□□ -0.17
LIMA1-201ENST00000341247 PANK3Q9H999 370 aa13.99□□□□□ -0.17
LIMA1-201ENST00000341247 SPHKAPQ2M3C7 1700 aa13.99□□□□□ -0.17
LIMA1-201ENST00000341247 FRMPD1Q5SYB0 1578 aa13.99□□□□□ -0.17
LIMA1-201ENST00000341247 NPM1P06748 294 aaKnown RBP eCLIP13.99□□□□□ -0.17
LIMA1-201ENST00000341247 PRDM15P57071 1507 aaPredicted RBP13.98□□□□□ -0.17
LIMA1-201ENST00000341247 RAPGEF3O95398 923 aa13.98□□□□□ -0.17
LIMA1-201ENST00000341247 CHGAP10645 457 aaKnown RBP13.98□□□□□ -0.17
LIMA1-201ENST00000341247 GPRASP1Q5JY77 1395 aa13.98□□□□□ -0.17
LIMA1-201ENST00000341247 CFAP65Q6ZU64 1925 aaKnown RBP13.98□□□□□ -0.17
LIMA1-201ENST00000341247 PTPRTO14522 1441 aa13.98□□□□□ -0.17
LIMA1-201ENST00000341247 MYBBP1AQ9BQG0 1328 aaKnown RBP13.98□□□□□ -0.17
LIMA1-201ENST00000341247 TRPM2O94759 1503 aa13.97□□□□□ -0.17
LIMA1-201ENST00000341247 CD109Q6YHK3 1445 aa13.97□□□□□ -0.17
LIMA1-201ENST00000341247 MADDQ8WXG6 1647 aa13.97□□□□□ -0.17
LIMA1-201ENST00000341247 SENP3Q9H4L4 574 aaPredicted RBP13.97□□□□□ -0.17
LIMA1-201ENST00000341247 TMF1P82094 1093 aa13.96□□□□□ -0.17
LIMA1-201ENST00000341247 RALBP1Q15311 655 aa13.96□□□□□ -0.17
LIMA1-201ENST00000341247 RBM19Q9Y4C8 960 aaKnown RBP13.96□□□□□ -0.17
LIMA1-201ENST00000341247 PPRC1Q5VV67 1664 aaKnown RBP13.96□□□□□ -0.18
LIMA1-201ENST00000341247 CEP152O94986 1710 aa13.96□□□□□ -0.18
LIMA1-201ENST00000341247 TET3O43151 1660 aa13.95□□□□□ -0.18
LIMA1-201ENST00000341247 KTN1Q86UP2 1357 aaKnown RBP13.95□□□□□ -0.18
LIMA1-201ENST00000341247 RNF17Q9BXT8 1623 aaKnown RBP13.95□□□□□ -0.18
LIMA1-201ENST00000341247 GGT6Q6P531 493 aa13.94□□□□□ -0.18
LIMA1-201ENST00000341247 MROH2AA6NES4 1674 aa13.94□□□□□ -0.18
LIMA1-201ENST00000341247 PER1O15534 1290 aaPredicted RBP13.94□□□□□ -0.18
LIMA1-201ENST00000341247 PPP4R2Q9NY27 417 aa13.94□□□□□ -0.18
LIMA1-201ENST00000341247 NUDCQ9Y266 331 aa13.94□□□□□ -0.18
LIMA1-201ENST00000341247 KANK1Q14678 1352 aa13.93□□□□□ -0.18
LIMA1-201ENST00000341247 CYB5RLQ6IPT4 315 aa13.93□□□□□ -0.18
LIMA1-201ENST00000341247 ABCA6Q8N139 1617 aa13.92□□□□□ -0.18
LIMA1-201ENST00000341247 POGZQ7Z3K3 1410 aa13.92□□□□□ -0.18
LIMA1-201ENST00000341247 COL17A1Q9UMD9 1497 aaPredicted RBP13.92□□□□□ -0.18
LIMA1-201ENST00000341247 NLRP13Q86W25 1043 aa13.92□□□□□ -0.18
LIMA1-201ENST00000341247 ZNF518AQ6AHZ1 1483 aa13.91□□□□□ -0.18
LIMA1-201ENST00000341247 ADGRF5Q8IZF2 1346 aa13.91□□□□□ -0.18
LIMA1-201ENST00000341247 CFAP70Q5T0N1 1121 aa13.91□□□□□ -0.18
LIMA1-201ENST00000341247 BRD4O60885 1362 aaPredicted RBP13.9□□□□□ -0.18
LIMA1-201ENST00000341247 LAMC1P11047 1609 aa13.9□□□□□ -0.18
LIMA1-201ENST00000341247 EFCAB6Q5THR3 1501 aa13.9□□□□□ -0.18
LIMA1-201ENST00000341247 EIF2AK4Q9P2K8 1649 aaKnown RBP13.89□□□□□ -0.19
LIMA1-201ENST00000341247 SIGLEC1Q9BZZ2 1709 aa13.89□□□□□ -0.19
LIMA1-201ENST00000341247 IQGAP1P46940 1657 aa13.89□□□□□ -0.19
LIMA1-201ENST00000341247 NUTM2DQ5VT03 806 aaPredicted RBP13.88□□□□□ -0.19
LIMA1-201ENST00000341247 NPATQ14207 1427 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms