RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 FAM161AQ3B820 660 aa17.25■□□□□ 0.35
RTN4-202ENST00000337526 RRP7AQ9Y3A4 280 aaKnown RBP17.25■□□□□ 0.35
RTN4-202ENST00000337526 DRC7Q8IY82 874 aa17.25■□□□□ 0.35
RTN4-202ENST00000337526 SLC4A3P48751 1232 aa17.25■□□□□ 0.35
RTN4-202ENST00000337526 CCDC144AA2RUR9 1427 aa17.24■□□□□ 0.35
RTN4-202ENST00000337526 TRAK1Q9UPV9 953 aa17.24■□□□□ 0.35
RTN4-202ENST00000337526 CRBNQ96SW2 442 aa17.23■□□□□ 0.35
RTN4-202ENST00000337526 STK31Q9BXU1 1019 aa17.23■□□□□ 0.35
RTN4-202ENST00000337526 BCL2L13Q9BXK5 485 aa17.23■□□□□ 0.35
RTN4-202ENST00000337526 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.23■□□□□ 0.35
RTN4-202ENST00000337526 KIAA2012Q0VF49 1180 aa17.22■□□□□ 0.35
RTN4-202ENST00000337526 HMMRO75330 724 aa17.21■□□□□ 0.35
RTN4-202ENST00000337526 NUTM2DQ5VT03 806 aaPredicted RBP17.21■□□□□ 0.35
RTN4-202ENST00000337526 E9PSI1 815 aa17.2■□□□□ 0.34
RTN4-202ENST00000337526 FOXD4L1Q9NU39 408 aa17.2■□□□□ 0.34
RTN4-202ENST00000337526 APAF1O14727 1248 aa17.2■□□□□ 0.34
RTN4-202ENST00000337526 SYAP1Q96A49 352 aaPredicted RBP17.2■□□□□ 0.34
RTN4-202ENST00000337526 CGNL1Q0VF96 1302 aa17.19■□□□□ 0.34
RTN4-202ENST00000337526 SLC4A10Q6U841 1118 aa17.19■□□□□ 0.34
RTN4-202ENST00000337526 COG6Q9Y2V7 657 aa17.19■□□□□ 0.34
RTN4-202ENST00000337526 WASHC2CQ9Y4E1 1318 aa17.18■□□□□ 0.34
RTN4-202ENST00000337526 IGF1RP08069 1367 aa17.18■□□□□ 0.34
RTN4-202ENST00000337526 TRIM6-TRIM34B2RNG4 842 aa17.18■□□□□ 0.34
RTN4-202ENST00000337526 PAK3O75914 559 aaPredicted RBP17.18■□□□□ 0.34
RTN4-202ENST00000337526 HMGXB3Q12766 1538 aa17.18■□□□□ 0.34
RTN4-202ENST00000337526 CHMP4AQ9BY43 222 aa17.17■□□□□ 0.34
RTN4-202ENST00000337526 GSE1Q14687 1217 aa17.17■□□□□ 0.34
RTN4-202ENST00000337526 LMOD3Q0VAK6 560 aa17.16■□□□□ 0.34
RTN4-202ENST00000337526 KIF7Q2M1P5 1343 aa17.16■□□□□ 0.34
RTN4-202ENST00000337526 CCDC7Q96M83 1385 aa17.16■□□□□ 0.34
RTN4-202ENST00000337526 NPHP1O15259 732 aa17.15■□□□□ 0.34
RTN4-202ENST00000337526 ELL2O00472 640 aaPredicted RBP17.15■□□□□ 0.34
RTN4-202ENST00000337526 NESP48681 1621 aa17.15■□□□□ 0.34
RTN4-202ENST00000337526 ZKSCAN2Q63HK3 967 aa17.15■□□□□ 0.34
RTN4-202ENST00000337526 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.15■□□□□ 0.341e-7■■■□□ 14.8
RTN4-202ENST00000337526 TULP1O00294 542 aaPredicted RBP17.14■□□□□ 0.33
RTN4-202ENST00000337526 ST18O60284 1047 aa17.13■□□□□ 0.33
RTN4-202ENST00000337526 CYB5RLQ6IPT4 315 aa17.13■□□□□ 0.33
RTN4-202ENST00000337526 FGD6Q6ZV73 1430 aa17.13■□□□□ 0.33
RTN4-202ENST00000337526 NOL8Q76FK4 1167 aaKnown RBP17.12■□□□□ 0.33
RTN4-202ENST00000337526 UACAQ9BZF9 1416 aa17.12■□□□□ 0.33
RTN4-202ENST00000337526 GNL2Q13823 731 aaKnown RBP17.12■□□□□ 0.33
RTN4-202ENST00000337526 ANKRD45Q5TZF3 282 aa17.11■□□□□ 0.33
RTN4-202ENST00000337526 HTATSF1O43719 755 aaKnown RBP17.11■□□□□ 0.33
RTN4-202ENST00000337526 DDX11L8A8MPP1 907 aa17.11■□□□□ 0.33
RTN4-202ENST00000337526 HDAC5Q9UQL6 1122 aa17.11■□□□□ 0.33
RTN4-202ENST00000337526 WASHC2AQ641Q2 1341 aa17.1■□□□□ 0.33
RTN4-202ENST00000337526 ARID3AQ99856 593 aa17.1■□□□□ 0.33
RTN4-202ENST00000337526 KIF21BO75037 1637 aa17.1■□□□□ 0.33
RTN4-202ENST00000337526 ZNF644Q9H582 1327 aaPredicted RBP17.09■□□□□ 0.33
RTN4-202ENST00000337526 NGEFQ8N5V2 710 aa17.09■□□□□ 0.33
RTN4-202ENST00000337526 CFTRP13569 1480 aa17.08■□□□□ 0.33
RTN4-202ENST00000337526 DDX49Q9Y6V7 483 aaKnown RBP17.08■□□□□ 0.32
RTN4-202ENST00000337526 MYOM3Q5VTT5 1437 aa17.07■□□□□ 0.32
RTN4-202ENST00000337526 NGDNQ8NEJ9 315 aaKnown RBP17.07■□□□□ 0.32
RTN4-202ENST00000337526 MRC2Q9UBG0 1479 aa17.07■□□□□ 0.32
RTN4-202ENST00000337526 GPATCH3Q96I76 525 aa17.07■□□□□ 0.32
RTN4-202ENST00000337526 AMPHP49418 695 aa17.07■□□□□ 0.32
RTN4-202ENST00000337526 CNTLNQ9NXG0 1405 aa17.06■□□□□ 0.32
RTN4-202ENST00000337526 NUTM2FA1L443 756 aa17.06■□□□□ 0.32
RTN4-202ENST00000337526 VGFO15240 615 aaPredicted RBP17.06■□□□□ 0.32
RTN4-202ENST00000337526 FOXD4L5Q5VV16 416 aaPredicted RBP17.06■□□□□ 0.32
RTN4-202ENST00000337526 FOXD4L4Q8WXT5 416 aaPredicted RBP17.06■□□□□ 0.32
RTN4-202ENST00000337526 CSB-PGBD3P0DP91 1061 aa17.05■□□□□ 0.32
RTN4-202ENST00000337526 ZNF330Q9Y3S2 320 aaPredicted RBP17.05■□□□□ 0.32
RTN4-202ENST00000337526 EVC2Q86UK5 1308 aa17.05■□□□□ 0.32
RTN4-202ENST00000337526 LRRC9Q6ZRR7 1453 aa17.05■□□□□ 0.32
RTN4-202ENST00000337526 DDX19BQ9UMR2 479 aa17.04■□□□□ 0.32
RTN4-202ENST00000337526 FGD5Q6ZNL6 1462 aa17.03■□□□□ 0.32
RTN4-202ENST00000337526 CSPP1Q1MSJ5 1256 aa17.03■□□□□ 0.32
RTN4-202ENST00000337526 PTPRGP23470 1445 aa17.03■□□□□ 0.32
RTN4-202ENST00000337526 DZIP1LQ8IYY4 767 aaKnown RBP17.03■□□□□ 0.32
RTN4-202ENST00000337526 GORABQ5T7V8 394 aa17.02■□□□□ 0.32
RTN4-202ENST00000337526 LTV1Q96GA3 475 aaPredicted RBP17.02■□□□□ 0.32
RTN4-202ENST00000337526 SKOR2Q2VWA4 1001 aaPredicted RBP17.02■□□□□ 0.31
RTN4-202ENST00000337526 CHMP3Q9Y3E7 222 aa17.01■□□□□ 0.31
RTN4-202ENST00000337526 GAPVD1Q14C86 1478 aa17.01■□□□□ 0.31
RTN4-202ENST00000337526 PHF14O94880 888 aa17.01■□□□□ 0.31
RTN4-202ENST00000337526 RILPL2Q969X0 211 aa17.01■□□□□ 0.31
RTN4-202ENST00000337526 KIF16BQ96L93 1317 aa17■□□□□ 0.31
RTN4-202ENST00000337526 HSP90B1P14625 803 aaKnown RBP17■□□□□ 0.31
RTN4-202ENST00000337526 RAD54L2Q9Y4B4 1467 aa16.99■□□□□ 0.31
RTN4-202ENST00000337526 COG3Q96JB2 828 aa16.99■□□□□ 0.31
RTN4-202ENST00000337526 RSPH6AQ9H0K4 717 aa16.98■□□□□ 0.31
RTN4-202ENST00000337526 MINK1Q8N4C8 1332 aaPredicted RBP16.98■□□□□ 0.31
RTN4-202ENST00000337526 CHMP5Q9NZZ3 219 aa16.98■□□□□ 0.31
RTN4-202ENST00000337526 RIPK4P57078 832 aa16.98■□□□□ 0.31
RTN4-202ENST00000337526 RUNDC1Q96C34 613 aa16.98■□□□□ 0.31
RTN4-202ENST00000337526 AQRO60306 1485 aaKnown RBP eCLIP16.98■□□□□ 0.317e-8■■■■■ 28.3
RTN4-202ENST00000337526 DIAPH1O60610 1272 aaKnown RBP16.98■□□□□ 0.31
RTN4-202ENST00000337526 ADAMTS8Q9UP79 889 aa16.98■□□□□ 0.31
RTN4-202ENST00000337526 EID1Q9Y6B2 187 aa16.98■□□□□ 0.31
RTN4-202ENST00000337526 BRD4O60885 1362 aaPredicted RBP16.97■□□□□ 0.31
RTN4-202ENST00000337526 CDCA7LQ96GN5 454 aa16.97■□□□□ 0.31
RTN4-202ENST00000337526 RRBP1Q9P2E9 1410 aaKnown RBP16.97■□□□□ 0.31
RTN4-202ENST00000337526 FOXD4L6Q3SYB3 417 aaPredicted RBP16.97■□□□□ 0.31
RTN4-202ENST00000337526 FOXD4L3Q6VB84 417 aaPredicted RBP16.97■□□□□ 0.31
RTN4-202ENST00000337526 ARAP1Q96P48 1450 aa16.96■□□□□ 0.31
RTN4-202ENST00000337526 TPM4P67936 248 aa16.96■□□□□ 0.31
RTN4-202ENST00000337526 HSP90AA2PQ14568 343 aaPredicted RBP16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms