RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 CENPQQ7L2Z9 268 aaPredicted RBP13.5□□□□□ -0.25
CD44-201ENST00000263398 USP35Q9P2H5 1018 aa13.5□□□□□ -0.25
CD44-201ENST00000263398 USP47Q96K76 1375 aa13.49□□□□□ -0.25
CD44-201ENST00000263398 CUX1P39880 1505 aa13.49□□□□□ -0.25
CD44-201ENST00000263398 CC2D2AQ9P2K1 1620 aa13.49□□□□□ -0.25
CD44-201ENST00000263398 ARAP1Q96P48 1450 aa13.48□□□□□ -0.25
CD44-201ENST00000263398 PDE4AP27815 886 aa13.48□□□□□ -0.25
CD44-201ENST00000263398 LMOD3Q0VAK6 560 aa13.48□□□□□ -0.25
CD44-201ENST00000263398 UNC13AQ9UPW8 1703 aa13.48□□□□□ -0.25
CD44-201ENST00000263398 RRP1P56182 461 aaKnown RBP13.48□□□□□ -0.25
CD44-201ENST00000263398 GOLGA6L3A6NEY3 463 aa13.48□□□□□ -0.25
CD44-201ENST00000263398 SYAP1Q96A49 352 aaPredicted RBP13.47□□□□□ -0.25
CD44-201ENST00000263398 GAPVD1Q14C86 1478 aa13.47□□□□□ -0.25
CD44-201ENST00000263398 DRC7Q8IY82 874 aa13.47□□□□□ -0.25
CD44-201ENST00000263398 HDAC5Q9UQL6 1122 aa13.47□□□□□ -0.25
CD44-201ENST00000263398 WASHC2CQ9Y4E1 1318 aa13.46□□□□□ -0.25
CD44-201ENST00000263398 NPHP1O15259 732 aa13.46□□□□□ -0.25
CD44-201ENST00000263398 KIAA2012Q0VF49 1180 aa13.46□□□□□ -0.25
CD44-201ENST00000263398 FAM161AQ3B820 660 aa13.46□□□□□ -0.25
CD44-201ENST00000263398 EXOC6Q8TAG9 804 aa13.46□□□□□ -0.26
CD44-201ENST00000263398 TRAK1Q9UPV9 953 aa13.46□□□□□ -0.26
CD44-201ENST00000263398 E9PSI1 815 aa13.45□□□□□ -0.26
CD44-201ENST00000263398 CGNL1Q0VF96 1302 aa13.45□□□□□ -0.26
CD44-201ENST00000263398 FANCIQ9NVI1 1328 aa13.44□□□□□ -0.26
CD44-201ENST00000263398 HTATSF1O43719 755 aaKnown RBP13.44□□□□□ -0.26
CD44-201ENST00000263398 PAK3O75914 559 aaPredicted RBP13.44□□□□□ -0.26
CD44-201ENST00000263398 NGEFQ8N5V2 710 aa13.44□□□□□ -0.26
CD44-201ENST00000263398 PLIN1O60240 522 aa13.43□□□□□ -0.26
CD44-201ENST00000263398 RRP7AQ9Y3A4 280 aaKnown RBP13.42□□□□□ -0.26
CD44-201ENST00000263398 UACAQ9BZF9 1416 aa13.42□□□□□ -0.26
CD44-201ENST00000263398 TRIM6-TRIM34B2RNG4 842 aa13.42□□□□□ -0.26
CD44-201ENST00000263398 TOP2BQ02880 1626 aa13.42□□□□□ -0.26
CD44-201ENST00000263398 CRBNQ96SW2 442 aa13.41□□□□□ -0.26
CD44-201ENST00000263398 SLC4A10Q6U841 1118 aa13.41□□□□□ -0.26
CD44-201ENST00000263398 ZNF644Q9H582 1327 aaPredicted RBP13.41□□□□□ -0.26
CD44-201ENST00000263398 ZKSCAN2Q63HK3 967 aa13.4□□□□□ -0.26
CD44-201ENST00000263398 FGD6Q6ZV73 1430 aa13.4□□□□□ -0.26
CD44-201ENST00000263398 GNL2Q13823 731 aaKnown RBP13.4□□□□□ -0.26
CD44-201ENST00000263398 MYOM3Q5VTT5 1437 aa13.4□□□□□ -0.26
CD44-201ENST00000263398 APAF1O14727 1248 aa13.4□□□□□ -0.26
CD44-201ENST00000263398 ST18O60284 1047 aa13.4□□□□□ -0.26
CD44-201ENST00000263398 NUTM2DQ5VT03 806 aaPredicted RBP13.4□□□□□ -0.26
CD44-201ENST00000263398 GPATCH3Q96I76 525 aa13.4□□□□□ -0.26
CD44-201ENST00000263398 PRXQ9BXM0 1461 aa13.39□□□□□ -0.27
CD44-201ENST00000263398 CCDC7Q96M83 1385 aa13.39□□□□□ -0.27
CD44-201ENST00000263398 BCL2L13Q9BXK5 485 aa13.39□□□□□ -0.27
CD44-201ENST00000263398 HMGXB3Q12766 1538 aa13.39□□□□□ -0.27
CD44-201ENST00000263398 VGFO15240 615 aaPredicted RBP13.39□□□□□ -0.27
CD44-201ENST00000263398 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.38□□□□□ -0.27
CD44-201ENST00000263398 COG6Q9Y2V7 657 aa13.38□□□□□ -0.27
CD44-201ENST00000263398 DDX11L8A8MPP1 907 aa13.38□□□□□ -0.27
CD44-201ENST00000263398 NGDNQ8NEJ9 315 aaKnown RBP13.37□□□□□ -0.27
CD44-201ENST00000263398 PTPRGP23470 1445 aa13.37□□□□□ -0.27
CD44-201ENST00000263398 KIF7Q2M1P5 1343 aa13.37□□□□□ -0.27
CD44-201ENST00000263398 EVC2Q86UK5 1308 aa13.37□□□□□ -0.27
CD44-201ENST00000263398 CSB-PGBD3P0DP91 1061 aa13.37□□□□□ -0.27
CD44-201ENST00000263398 TULP1O00294 542 aaPredicted RBP13.37□□□□□ -0.27
CD44-201ENST00000263398 AMPHP49418 695 aa13.37□□□□□ -0.27
CD44-201ENST00000263398 CSPP1Q1MSJ5 1256 aa13.37□□□□□ -0.27
CD44-201ENST00000263398 POLA1P09884 1462 aaPredicted RBP13.36□□□□□ -0.27
CD44-201ENST00000263398 FOXD4L1Q9NU39 408 aa13.36□□□□□ -0.27
CD44-201ENST00000263398 EID1Q9Y6B2 187 aa13.35□□□□□ -0.27
CD44-201ENST00000263398 SLC4A3P48751 1232 aa13.35□□□□□ -0.27
CD44-201ENST00000263398 GSE1Q14687 1217 aa13.35□□□□□ -0.27
CD44-201ENST00000263398 STAC3Q96MF2 364 aa13.35□□□□□ -0.27
CD44-201ENST00000263398 TRHP20396 242 aaPredicted RBP13.35□□□□□ -0.27
CD44-201ENST00000263398 TOPBP1Q92547 1522 aa13.35□□□□□ -0.27
CD44-201ENST00000263398 ELL2O00472 640 aaPredicted RBP13.34□□□□□ -0.27
CD44-201ENST00000263398 ANKRD45Q5TZF3 282 aa13.34□□□□□ -0.27
CD44-201ENST00000263398 LRRC9Q6ZRR7 1453 aa13.34□□□□□ -0.27
CD44-201ENST00000263398 GORABQ5T7V8 394 aa13.34□□□□□ -0.27
CD44-201ENST00000263398 CNTLNQ9NXG0 1405 aa13.33□□□□□ -0.28
CD44-201ENST00000263398 DDX19BQ9UMR2 479 aa13.33□□□□□ -0.28
CD44-201ENST00000263398 PHF14O94880 888 aa13.33□□□□□ -0.28
CD44-201ENST00000263398 ZNF330Q9Y3S2 320 aaPredicted RBP13.32□□□□□ -0.28
CD44-201ENST00000263398 NOL8Q76FK4 1167 aaKnown RBP13.32□□□□□ -0.28
CD44-201ENST00000263398 ERICH3Q5RHP9 1530 aa13.31□□□□□ -0.28
CD44-201ENST00000263398 SKOR2Q2VWA4 1001 aaPredicted RBP13.31□□□□□ -0.28
CD44-201ENST00000263398 CCDC34Q96HJ3 373 aa13.31□□□□□ -0.28
CD44-201ENST00000263398 COG3Q96JB2 828 aa13.31□□□□□ -0.28
CD44-201ENST00000263398 DDX49Q9Y6V7 483 aaKnown RBP13.31□□□□□ -0.28
CD44-201ENST00000263398 KIF16BQ96L93 1317 aa13.31□□□□□ -0.28
CD44-201ENST00000263398 KIF3AQ9Y496 699 aa13.3□□□□□ -0.28
CD44-201ENST00000263398 TPM4P67936 248 aa13.3□□□□□ -0.28
CD44-201ENST00000263398 CHMP3Q9Y3E7 222 aa13.3□□□□□ -0.28
CD44-201ENST00000263398 DZIP1LQ8IYY4 767 aaKnown RBP13.3□□□□□ -0.28
CD44-201ENST00000263398 WASHC2AQ641Q2 1341 aa13.3□□□□□ -0.28
CD44-201ENST00000263398 MIA2Q96PC5 1412 aa13.3□□□□□ -0.28
CD44-201ENST00000263398 NUTM2FA1L443 756 aa13.29□□□□□ -0.28
CD44-201ENST00000263398 HSP90B1P14625 803 aaKnown RBP13.29□□□□□ -0.28
CD44-201ENST00000263398 LTV1Q96GA3 475 aaPredicted RBP13.29□□□□□ -0.28
CD44-201ENST00000263398 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.29□□□□□ -0.28
CD44-201ENST00000263398 TAF7LQ5H9L4 462 aa13.29□□□□□ -0.28
CD44-201ENST00000263398 DIAPH1O60610 1272 aaKnown RBP13.28□□□□□ -0.28
CD44-201ENST00000263398 RUNDC1Q96C34 613 aa13.28□□□□□ -0.28
CD44-201ENST00000263398 BRD4O60885 1362 aaPredicted RBP13.28□□□□□ -0.28
CD44-201ENST00000263398 AAMPQ13685 434 aa13.28□□□□□ -0.28
CD44-201ENST00000263398 CASKIN1Q8WXD9 1431 aa13.28□□□□□ -0.28
CD44-201ENST00000263398 API5Q9BZZ5 524 aaKnown RBP13.27□□□□□ -0.28
CD44-201ENST00000263398 ATP6V1DQ9Y5K8 247 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms