RNA–Protein interactions for RNA: ENST00000257290.9

PDGFRA-201, Transcript of platelet derived growth factor receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRA, Length 6,576 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-201ENST00000257290 FMN1Q68DA7 1419 aa8.45□□□□□ -1.06
PDGFRA-201ENST00000257290 DDX10Q13206 875 aaKnown RBP8.45□□□□□ -1.06
PDGFRA-201ENST00000257290 FAM9BQ8IZU0 186 aa8.45□□□□□ -1.06
PDGFRA-201ENST00000257290 UNC13AQ9UPW8 1703 aa8.44□□□□□ -1.06
PDGFRA-201ENST00000257290 NFKBIBQ15653 356 aa8.44□□□□□ -1.06
PDGFRA-201ENST00000257290 FGD5Q6ZNL6 1462 aa8.44□□□□□ -1.06
PDGFRA-201ENST00000257290 TSPY4P0CV99 314 aa8.44□□□□□ -1.06
PDGFRA-201ENST00000257290 TSPY10P0CW01 314 aa8.44□□□□□ -1.06
PDGFRA-201ENST00000257290 KCNA4P22459 653 aa8.44□□□□□ -1.06
PDGFRA-201ENST00000257290 CARMIL2Q6F5E8 1435 aa8.43□□□□□ -1.06
PDGFRA-201ENST00000257290 TIGD1Q96MW7 591 aa8.43□□□□□ -1.06
PDGFRA-201ENST00000257290 CHIC2Q9UKJ5 165 aa8.43□□□□□ -1.06
PDGFRA-201ENST00000257290 TMX4Q9H1E5 349 aaPredicted RBP8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 MPHOSPH10O00566 681 aaKnown RBP8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 PAK3O75914 559 aaPredicted RBP8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 ANAPC15P60006 121 aa8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 MEX3CQ5U5Q3 659 aaKnown RBP8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 CTR9Q6PD62 1173 aa8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 MRE11P49959 708 aa8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 TNNT1P13805 278 aa8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 MNS1Q8NEH6 495 aa8.42□□□□□ -1.06
PDGFRA-201ENST00000257290 HSP90AB3PQ58FF7 597 aa8.41□□□□□ -1.06
PDGFRA-201ENST00000257290 HTATSF1O43719 755 aaKnown RBP8.41□□□□□ -1.06
PDGFRA-201ENST00000257290 RUSC2Q8N2Y8 1516 aa8.41□□□□□ -1.06
PDGFRA-201ENST00000257290 ARHGAP35Q9NRY4 1499 aa8.41□□□□□ -1.06
PDGFRA-201ENST00000257290 ESPNB1AK53 854 aa8.4□□□□□ -1.06
PDGFRA-201ENST00000257290 CCNB3Q8WWL7 1395 aa8.4□□□□□ -1.06
PDGFRA-201ENST00000257290 TOP2BQ02880 1626 aa8.4□□□□□ -1.06
PDGFRA-201ENST00000257290 CLCN1P35523 988 aa8.4□□□□□ -1.06
PDGFRA-201ENST00000257290 KIF21BO75037 1637 aa8.4□□□□□ -1.07
PDGFRA-201ENST00000257290 HMGN5P82970 282 aaKnown RBP8.4□□□□□ -1.07
PDGFRA-201ENST00000257290 SUDS3Q9H7L9 328 aaPredicted RBP8.39□□□□□ -1.07
PDGFRA-201ENST00000257290 ZBTB12Q9Y330 459 aaPredicted RBP8.39□□□□□ -1.07
PDGFRA-201ENST00000257290 SYNJ1O43426 1573 aa8.39□□□□□ -1.07
PDGFRA-201ENST00000257290 USP8P40818 1118 aa8.39□□□□□ -1.07
PDGFRA-201ENST00000257290 UQCRHLA0A096LP55 91 aa8.39□□□□□ -1.07
PDGFRA-201ENST00000257290 UQCRHP07919 91 aa8.39□□□□□ -1.07
PDGFRA-201ENST00000257290 GBP4Q96PP9 640 aa8.39□□□□□ -1.07
PDGFRA-201ENST00000257290 SETSIPP0DME0 302 aa8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 TMEM132AQ24JP5 1023 aa8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 STAC3Q96MF2 364 aa8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 CFDP1Q9UEE9 299 aaPredicted RBP8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 RDXP35241 583 aaKnown RBP8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 H0YHG0 523 aa8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 SARNPP82979 210 aaKnown RBP8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 ERICH3Q5RHP9 1530 aa8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.38□□□□□ -1.07
PDGFRA-201ENST00000257290 TMCO5BA8MYB1 307 aa8.37□□□□□ -1.07
PDGFRA-201ENST00000257290 SLC4A1APQ9BWU0 796 aaKnown RBP8.37□□□□□ -1.07
PDGFRA-201ENST00000257290 GAPVD1Q14C86 1478 aa8.37□□□□□ -1.07
PDGFRA-201ENST00000257290 SOX12O15370 315 aa8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 DDX11L8A8MPP1 907 aa8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 MYCBPQ99417 103 aaPredicted RBP8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 IGF1RP08069 1367 aa8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 LIG1P18858 919 aa8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 GIMAP7Q8NHV1 300 aa8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 RRP7BPQ9NSQ0 103 aa8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 MRC2Q9UBG0 1479 aa8.36□□□□□ -1.07
PDGFRA-201ENST00000257290 RAD54L2Q9Y4B4 1467 aa8.35□□□□□ -1.07
PDGFRA-201ENST00000257290 TRIM6-TRIM34B2RNG4 842 aa8.35□□□□□ -1.07
PDGFRA-201ENST00000257290 TRIM34Q9BYJ4 488 aa8.35□□□□□ -1.07
PDGFRA-201ENST00000257290 CENPJQ9HC77 1338 aaPredicted RBP8.35□□□□□ -1.07
PDGFRA-201ENST00000257290 CBX1P83916 185 aa8.35□□□□□ -1.07
PDGFRA-201ENST00000257290 ISY1Q9ULR0 285 aaKnown RBP8.35□□□□□ -1.07
PDGFRA-201ENST00000257290 CCER2I3L3R5 266 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 NRDCO43847 1150 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 UTP14CQ5TAP6 766 aaKnown RBP8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 KCNH8Q96L42 1107 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 FHOD3Q2V2M9 1422 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 CCP110O43303 1012 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 ESF1Q9H501 851 aaKnown RBP8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 DIAPH3Q9NSV4 1193 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 DNMBPQ6XZF7 1577 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 CUX1P39880 1505 aa8.34□□□□□ -1.07
PDGFRA-201ENST00000257290 LAMC3Q9Y6N6 1575 aa8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 NBPF1Q3BBV0 1214 aa8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 SKOR2Q2VWA4 1001 aaPredicted RBP8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 SLKQ9H2G2 1235 aaPredicted RBP8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 GTF2E1P29083 439 aaPredicted RBP8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 RBM25P49756 843 aaKnown RBP8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 WASHC2CQ9Y4E1 1318 aa8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 DYNC1I1O14576 645 aa8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 PLCB2Q00722 1185 aa8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 PDCL2Q8N4E4 241 aa8.33□□□□□ -1.08
PDGFRA-201ENST00000257290 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.32□□□□□ -1.08
PDGFRA-201ENST00000257290 CCDC94Q9BW85 323 aaPredicted RBP8.32□□□□□ -1.08
PDGFRA-201ENST00000257290 TOPBP1Q92547 1522 aa8.32□□□□□ -1.08
PDGFRA-201ENST00000257290 KANK4Q5T7N3 995 aaPredicted RBP8.32□□□□□ -1.08
PDGFRA-201ENST00000257290 SETD5Q9C0A6 1442 aa8.32□□□□□ -1.08
PDGFRA-201ENST00000257290 IFT140Q96RY7 1462 aa8.32□□□□□ -1.08
PDGFRA-201ENST00000257290 NAP1L1P55209 391 aaKnown RBP8.32□□□□□ -1.08
PDGFRA-201ENST00000257290 CCDC91Q7Z6B0 441 aa8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 TERF2IPQ9NYB0 399 aa8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 KNSTRNQ9Y448 316 aa8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 CCDC173Q0VFZ6 552 aa8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 HSCBQ8IWL3 235 aa8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 NESP48681 1621 aa8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 CCDC18Q5T9S5 1454 aa8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 ZRSR1Q15695 479 aaKnown RBP8.31□□□□□ -1.08
PDGFRA-201ENST00000257290 CEP120Q8N960 986 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms