RNA–Protein interactions for RNA: ENST00000243326.9

RIF1-201, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 15,003 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-201ENST00000243326 FANCIQ9NVI1 1328 aa9.41□□□□□ -0.9
RIF1-201ENST00000243326 ANKRD45Q5TZF3 282 aa9.41□□□□□ -0.9
RIF1-201ENST00000243326 RILPL2Q969X0 211 aa9.41□□□□□ -0.9
RIF1-201ENST00000243326 PRDM10Q9NQV6 1147 aa9.41□□□□□ -0.9
RIF1-201ENST00000243326 RUSC2Q8N2Y8 1516 aa9.4□□□□□ -0.9
RIF1-201ENST00000243326 GOLGA2Q08379 1002 aa9.4□□□□□ -0.9
RIF1-201ENST00000243326 FAM161AQ3B820 660 aa9.4□□□□□ -0.9
RIF1-201ENST00000243326 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.4□□□□□ -0.9
RIF1-201ENST00000243326 NOC3LQ8WTT2 800 aaKnown RBP9.4□□□□□ -0.9
RIF1-201ENST00000243326 ARHGAP35Q9NRY4 1499 aa9.4□□□□□ -0.9
RIF1-201ENST00000243326 MCTP1Q6DN14 999 aa9.4□□□□□ -0.91
RIF1-201ENST00000243326 CENPJQ9HC77 1338 aaPredicted RBP9.4□□□□□ -0.91
RIF1-201ENST00000243326 LTV1Q96GA3 475 aaPredicted RBP9.39□□□□□ -0.91
RIF1-201ENST00000243326 PANK1Q8TE04 598 aa9.39□□□□□ -0.91
RIF1-201ENST00000243326 RNF214Q8ND24 703 aa9.39□□□□□ -0.91
RIF1-201ENST00000243326 KIAA1211Q6ZU35 1233 aa9.38□□□□□ -0.91
RIF1-201ENST00000243326 AKNAQ7Z591 1439 aa9.38□□□□□ -0.91
RIF1-201ENST00000243326 VPS8Q8N3P4 1428 aa9.38□□□□□ -0.91
RIF1-201ENST00000243326 PMFBP1Q8TBY8 1022 aa9.37□□□□□ -0.91
RIF1-201ENST00000243326 CDCA8Q53HL2 280 aa9.37□□□□□ -0.91
RIF1-201ENST00000243326 SKIDA1Q1XH10 827 aa9.36□□□□□ -0.91
RIF1-201ENST00000243326 CDCA7LQ96GN5 454 aa9.36□□□□□ -0.91
RIF1-201ENST00000243326 NPHP1O15259 732 aa9.36□□□□□ -0.91
RIF1-201ENST00000243326 PES1O00541 588 aaKnown RBP9.35□□□□□ -0.91
RIF1-201ENST00000243326 APAF1O14727 1248 aa9.35□□□□□ -0.91
RIF1-201ENST00000243326 KIF27Q86VH2 1401 aa9.35□□□□□ -0.91
RIF1-201ENST00000243326 CCDC184Q52MB2 194 aa9.35□□□□□ -0.91
RIF1-201ENST00000243326 PANK3Q9H999 370 aa9.35□□□□□ -0.91
RIF1-201ENST00000243326 CUX2O14529 1486 aa9.35□□□□□ -0.91
RIF1-201ENST00000243326 NRDCO43847 1150 aa9.35□□□□□ -0.91
RIF1-201ENST00000243326 MS4A1P11836 297 aa9.34□□□□□ -0.91
RIF1-201ENST00000243326 WWC1Q8IX03 1113 aa9.34□□□□□ -0.91
RIF1-201ENST00000243326 PRKRIP1Q9H875 184 aaPredicted RBP9.34□□□□□ -0.91
RIF1-201ENST00000243326 WIZO95785 1651 aa9.34□□□□□ -0.91
RIF1-201ENST00000243326 NUP155O75694 1391 aa9.34□□□□□ -0.91
RIF1-201ENST00000243326 LNPKQ9C0E8 428 aa9.34□□□□□ -0.91
RIF1-201ENST00000243326 RTF1Q92541 710 aaKnown RBP9.34□□□□□ -0.91
RIF1-201ENST00000243326 ST20-MTHFSA0A0A6YYL1 179 aa9.33□□□□□ -0.92
RIF1-201ENST00000243326 CCDC27Q2M243 656 aa9.33□□□□□ -0.92
RIF1-201ENST00000243326 HNRNPMP52272 730 aaKnown RBP eCLIP9.33□□□□□ -0.927e-8■■■□□ 15.7
RIF1-201ENST00000243326 GORABQ5T7V8 394 aa9.33□□□□□ -0.92
RIF1-201ENST00000243326 CENPQQ7L2Z9 268 aaPredicted RBP9.33□□□□□ -0.92
RIF1-201ENST00000243326 GGT6Q6P531 493 aa9.33□□□□□ -0.92
RIF1-201ENST00000243326 NGEFQ8N5V2 710 aa9.33□□□□□ -0.92
RIF1-201ENST00000243326 SYAP1Q96A49 352 aaPredicted RBP9.33□□□□□ -0.92
RIF1-201ENST00000243326 DDX11L8A8MPP1 907 aa9.33□□□□□ -0.92
RIF1-201ENST00000243326 FHOD3Q2V2M9 1422 aa9.33□□□□□ -0.92
RIF1-201ENST00000243326 TAF7LQ5H9L4 462 aa9.32□□□□□ -0.92
RIF1-201ENST00000243326 SPC24Q8NBT2 197 aa9.31□□□□□ -0.92
RIF1-201ENST00000243326 C1orf115Q9H7X2 142 aa9.31□□□□□ -0.92
RIF1-201ENST00000243326 TTLL5Q6EMB2 1281 aa9.31□□□□□ -0.92
RIF1-201ENST00000243326 TRAK1Q9UPV9 953 aa9.31□□□□□ -0.92
RIF1-201ENST00000243326 PODXL2Q9NZ53 605 aa9.31□□□□□ -0.92
RIF1-201ENST00000243326 RALBP1Q15311 655 aa9.31□□□□□ -0.92
RIF1-201ENST00000243326 IPO8O15397 1037 aaKnown RBP9.31□□□□□ -0.92
RIF1-201ENST00000243326 TOMM22Q9NS69 142 aa9.3□□□□□ -0.92
RIF1-201ENST00000243326 STK11IPQ8N1F8 1099 aa9.3□□□□□ -0.92
RIF1-201ENST00000243326 GOLGA6L1Q8N7Z2 621 aa9.3□□□□□ -0.92
RIF1-201ENST00000243326 MYBBP1AQ9BQG0 1328 aaKnown RBP9.3□□□□□ -0.92
RIF1-201ENST00000243326 FAM43AQ8N2R8 423 aa9.3□□□□□ -0.92
RIF1-201ENST00000243326 ZBTB9Q96C00 473 aa9.29□□□□□ -0.92
RIF1-201ENST00000243326 CARMIL1Q5VZK9 1371 aa9.29□□□□□ -0.92
RIF1-201ENST00000243326 RASSF8Q8NHQ8 419 aa9.29□□□□□ -0.92
RIF1-201ENST00000243326 CAVIN1Q6NZI2 390 aaKnown RBP9.28□□□□□ -0.92
RIF1-201ENST00000243326 VPS37CA5D8V6 355 aaPredicted RBP9.28□□□□□ -0.92
RIF1-201ENST00000243326 ZBED9Q6R2W3 1325 aa9.28□□□□□ -0.92
RIF1-201ENST00000243326 RAPGEF2Q9Y4G8 1499 aa9.28□□□□□ -0.92
RIF1-201ENST00000243326 TRAK2O60296 914 aa9.28□□□□□ -0.92
RIF1-201ENST00000243326 SF3A1Q15459 793 aaKnown RBP9.28□□□□□ -0.92
RIF1-201ENST00000243326 H3BQV1 296 aa9.27□□□□□ -0.93
RIF1-201ENST00000243326 IFFO2Q5TF58 517 aa9.27□□□□□ -0.93
RIF1-201ENST00000243326 KIF15Q9NS87 1388 aa9.27□□□□□ -0.93
RIF1-201ENST00000243326 IFT57Q9NWB7 429 aa9.27□□□□□ -0.93
RIF1-201ENST00000243326 MROH2BQ7Z745 1585 aa9.27□□□□□ -0.93
RIF1-201ENST00000243326 TRERF1Q96PN7 1200 aa9.27□□□□□ -0.93
RIF1-201ENST00000243326 ANO2Q9NQ90 1003 aa9.26□□□□□ -0.93
RIF1-201ENST00000243326 NASPP49321 788 aaPredicted RBP9.26□□□□□ -0.93
RIF1-201ENST00000243326 MAP4K4O95819 1239 aaPredicted RBP9.26□□□□□ -0.93
RIF1-201ENST00000243326 C22orf23Q9BZE7 217 aa9.26□□□□□ -0.93
RIF1-201ENST00000243326 KIF16BQ96L93 1317 aa9.26□□□□□ -0.93
RIF1-201ENST00000243326 ST18O60284 1047 aa9.25□□□□□ -0.93
RIF1-201ENST00000243326 NLRP13Q86W25 1043 aa9.25□□□□□ -0.93
RIF1-201ENST00000243326 EIF2S2P20042 333 aaKnown RBP9.25□□□□□ -0.93
RIF1-201ENST00000243326 HDGFL2Q7Z4V5 671 aaPredicted RBP9.25□□□□□ -0.93
RIF1-201ENST00000243326 ERICH4A6NGS2 130 aa9.25□□□□□ -0.93
RIF1-201ENST00000243326 IBSPP21815 317 aaPredicted RBP9.25□□□□□ -0.93
RIF1-201ENST00000243326 ZHX1Q9UKY1 873 aaPredicted RBP9.25□□□□□ -0.93
RIF1-201ENST00000243326 USP47Q96K76 1375 aa9.24□□□□□ -0.93
RIF1-201ENST00000243326 TPD52L1Q16890 204 aaPredicted RBP9.24□□□□□ -0.93
RIF1-201ENST00000243326 CHMP4BQ9H444 224 aaKnown RBP9.24□□□□□ -0.93
RIF1-201ENST00000243326 HOMER1Q86YM7 354 aa9.24□□□□□ -0.93
RIF1-201ENST00000243326 PRPF40AO75400 957 aaKnown RBP9.24□□□□□ -0.93
RIF1-201ENST00000243326 BCAR3O75815 825 aa9.24□□□□□ -0.93
RIF1-201ENST00000243326 GOLGA6L19H0YKK7 550 aa9.24□□□□□ -0.93
RIF1-201ENST00000243326 HMOX1P09601 288 aa9.24□□□□□ -0.93
RIF1-201ENST00000243326 CSB-PGBD3P0DP91 1061 aa9.24□□□□□ -0.93
RIF1-201ENST00000243326 TPM4P67936 248 aa9.24□□□□□ -0.93
RIF1-201ENST00000243326 WASHC2AQ641Q2 1341 aa9.24□□□□□ -0.93
RIF1-201ENST00000243326 PDILTQ8N807 584 aa9.24□□□□□ -0.93
RIF1-201ENST00000243326 CHMP5Q9NZZ3 219 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms