RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SYNJ2O15056 1496 aa14.45□□□□□ -0.1
USP28-201ENST00000003302 C20orf194Q5TEA3 1177 aa14.45□□□□□ -0.1
USP28-201ENST00000003302 TSPY4P0CV99 314 aa14.44□□□□□ -0.1
USP28-201ENST00000003302 TSPY10P0CW01 314 aa14.44□□□□□ -0.1
USP28-201ENST00000003302 NPM2Q86SE8 214 aaKnown RBP14.44□□□□□ -0.1
USP28-201ENST00000003302 LRPPRCP42704 1394 aaKnown RBP14.44□□□□□ -0.1
USP28-201ENST00000003302 ITSN2Q9NZM3 1697 aa14.44□□□□□ -0.1
USP28-201ENST00000003302 UHRF1BP1Q6BDS2 1440 aa14.43□□□□□ -0.1
USP28-201ENST00000003302 ERICH6Q7L0X2 663 aa14.43□□□□□ -0.1
USP28-201ENST00000003302 TESK2Q96S53 571 aa14.43□□□□□ -0.1
USP28-201ENST00000003302 ADCY10Q96PN6 1610 aa14.42□□□□□ -0.1
USP28-201ENST00000003302 ERCC6L2Q5T890 1561 aa14.42□□□□□ -0.1
USP28-201ENST00000003302 SAMD9LQ8IVG5 1584 aa14.42□□□□□ -0.1
USP28-201ENST00000003302 KDM5DQ9BY66 1539 aa14.42□□□□□ -0.1
USP28-201ENST00000003302 NUP160Q12769 1436 aa14.42□□□□□ -0.1
USP28-201ENST00000003302 CDC42BPBQ9Y5S2 1711 aa14.41□□□□□ -0.1
USP28-201ENST00000003302 FAM135AQ9P2D6 1515 aa14.4□□□□□ -0.1
USP28-201ENST00000003302 PANK3Q9H999 370 aa14.4□□□□□ -0.1
USP28-201ENST00000003302 MYBBP1AQ9BQG0 1328 aaKnown RBP14.39□□□□□ -0.11
USP28-201ENST00000003302 RRP1P56182 461 aaKnown RBP14.39□□□□□ -0.11
USP28-201ENST00000003302 ERICH6BQ5W0A0 696 aa14.39□□□□□ -0.11
USP28-201ENST00000003302 PLEKHH2Q8IVE3 1493 aa14.39□□□□□ -0.11
USP28-201ENST00000003302 A2MP01023 1474 aa14.39□□□□□ -0.11
USP28-201ENST00000003302 NOP58Q9Y2X3 529 aaKnown RBP14.39□□□□□ -0.11
USP28-201ENST00000003302 SYCP2Q9BX26 1530 aa14.39□□□□□ -0.11
USP28-201ENST00000003302 PRAG1Q86YV5 1406 aa14.38□□□□□ -0.11
USP28-201ENST00000003302 PTPRGP23470 1445 aa14.38□□□□□ -0.11
USP28-201ENST00000003302 DEKP35659 375 aaKnown RBP14.38□□□□□ -0.11
USP28-201ENST00000003302 E9PCH4 1651 aa14.38□□□□□ -0.11
USP28-201ENST00000003302 ARHGEF12Q9NZN5 1544 aa14.37□□□□□ -0.11
USP28-201ENST00000003302 TTC37Q6PGP7 1564 aa14.37□□□□□ -0.11
USP28-201ENST00000003302 RCAN3Q9UKA8 241 aa14.36□□□□□ -0.11
USP28-201ENST00000003302 CARMIL2Q6F5E8 1435 aa14.36□□□□□ -0.11
USP28-201ENST00000003302 PARD3Q8TEW0 1356 aa14.35□□□□□ -0.11
USP28-201ENST00000003302 TRPM1Q7Z4N2 1603 aa14.35□□□□□ -0.11
USP28-201ENST00000003302 ADAMTS8Q9UP79 889 aa14.34□□□□□ -0.11
USP28-201ENST00000003302 CCDC144AA2RUR9 1427 aa14.34□□□□□ -0.11
USP28-201ENST00000003302 SPINK5Q9NQ38 1064 aaPredicted RBP14.33□□□□□ -0.12
USP28-201ENST00000003302 LAS1LQ9Y4W2 734 aaKnown RBP14.33□□□□□ -0.12
USP28-201ENST00000003302 BRD4O60885 1362 aaPredicted RBP14.32□□□□□ -0.12
USP28-201ENST00000003302 CRBNQ96SW2 442 aa14.32□□□□□ -0.12
USP28-201ENST00000003302 SLC4A3P48751 1232 aa14.32□□□□□ -0.12
USP28-201ENST00000003302 NLRP13Q86W25 1043 aa14.32□□□□□ -0.12
USP28-201ENST00000003302 SENP3Q9H4L4 574 aaPredicted RBP14.32□□□□□ -0.12
USP28-201ENST00000003302 CHD1O14646 1710 aa14.31□□□□□ -0.12
USP28-201ENST00000003302 DMRT2Q9Y5R5 561 aa14.31□□□□□ -0.12
USP28-201ENST00000003302 MAGI2Q86UL8 1455 aa14.31□□□□□ -0.12
USP28-201ENST00000003302 AFAP1Q8N556 730 aa14.31□□□□□ -0.12
USP28-201ENST00000003302 PLEKHH1Q9ULM0 1364 aa14.3□□□□□ -0.12
USP28-201ENST00000003302 CCDC141Q6ZP82 1450 aa14.3□□□□□ -0.12
USP28-201ENST00000003302 SHANK2Q9UPX8 1470 aa14.3□□□□□ -0.12
USP28-201ENST00000003302 CCDC146Q8IYE0 955 aa14.3□□□□□ -0.12
USP28-201ENST00000003302 IPO9Q96P70 1041 aaKnown RBP14.29□□□□□ -0.12
USP28-201ENST00000003302 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.29□□□□□ -0.12
USP28-201ENST00000003302 KTN1Q86UP2 1357 aaKnown RBP14.29□□□□□ -0.12
USP28-201ENST00000003302 MYO5CQ9NQX4 1742 aa14.28□□□□□ -0.12
USP28-201ENST00000003302 RALBP1Q15311 655 aa14.28□□□□□ -0.12
USP28-201ENST00000003302 ARHGAP5Q13017 1502 aa14.28□□□□□ -0.12
USP28-201ENST00000003302 ARID4BQ4LE39 1312 aaPredicted RBP14.27□□□□□ -0.12
USP28-201ENST00000003302 PDE4AP27815 886 aa14.27□□□□□ -0.12
USP28-201ENST00000003302 COL17A1Q9UMD9 1497 aaPredicted RBP14.27□□□□□ -0.13
USP28-201ENST00000003302 PREX2Q70Z35 1606 aa14.25□□□□□ -0.13
USP28-201ENST00000003302 TRAPPC8Q9Y2L5 1435 aa14.25□□□□□ -0.13
USP28-201ENST00000003302 ERBINQ96RT1 1412 aa14.25□□□□□ -0.13
USP28-201ENST00000003302 ARHGEF5Q12774 1597 aa14.23□□□□□ -0.13
USP28-201ENST00000003302 WDR7Q9Y4E6 1490 aa14.23□□□□□ -0.13
USP28-201ENST00000003302 BACH2Q9BYV9 841 aa14.23□□□□□ -0.13
USP28-201ENST00000003302 PRDM15P57071 1507 aaPredicted RBP14.22□□□□□ -0.13
USP28-201ENST00000003302 GPRASP1Q5JY77 1395 aa14.22□□□□□ -0.13
USP28-201ENST00000003302 UGGT1Q9NYU2 1555 aa14.22□□□□□ -0.13
USP28-201ENST00000003302 AMER1Q5JTC6 1135 aaPredicted RBP14.22□□□□□ -0.13
USP28-201ENST00000003302 ANP32AP39687 249 aaKnown RBP14.21□□□□□ -0.13
USP28-201ENST00000003302 ZBTB47Q9UFB7 747 aaPredicted RBP14.21□□□□□ -0.13
USP28-201ENST00000003302 PPP2R1AP30153 589 aa14.21□□□□□ -0.13
USP28-201ENST00000003302 DUSP27Q5VZP5 1158 aa14.2□□□□□ -0.14
USP28-201ENST00000003302 IL27Q8NEV9 243 aa14.2□□□□□ -0.14
USP28-201ENST00000003302 BCAR3O75815 825 aa14.2□□□□□ -0.14
USP28-201ENST00000003302 SHROOM2Q13796 1616 aa14.19□□□□□ -0.14
USP28-201ENST00000003302 RTN4Q9NQC3 1192 aaKnown RBP14.19□□□□□ -0.14
USP28-201ENST00000003302 BLMP54132 1417 aaPredicted RBP14.18□□□□□ -0.14
USP28-201ENST00000003302 CFAP70Q5T0N1 1121 aa14.18□□□□□ -0.14
USP28-201ENST00000003302 TNNT2P45379 298 aaPredicted RBP14.18□□□□□ -0.14
USP28-201ENST00000003302 UNC13BO14795 1591 aa14.17□□□□□ -0.14
USP28-201ENST00000003302 CARD14Q9BXL6 1004 aa14.17□□□□□ -0.14
USP28-201ENST00000003302 TNNQ9UQP3 1299 aa14.17□□□□□ -0.14
USP28-201ENST00000003302 TMF1P82094 1093 aa14.17□□□□□ -0.14
USP28-201ENST00000003302 APAF1O14727 1248 aa14.16□□□□□ -0.14
USP28-201ENST00000003302 CFAP65Q6ZU64 1925 aaKnown RBP14.15□□□□□ -0.14
USP28-201ENST00000003302 ADGRF5Q8IZF2 1346 aa14.15□□□□□ -0.14
USP28-201ENST00000003302 RGS3P49796 1198 aa14.15□□□□□ -0.14
USP28-201ENST00000003302 IQGAP3Q86VI3 1631 aa14.14□□□□□ -0.15
USP28-201ENST00000003302 NUTM2DQ5VT03 806 aaPredicted RBP14.14□□□□□ -0.15
USP28-201ENST00000003302 ZNF521Q96K83 1311 aa14.13□□□□□ -0.15
USP28-201ENST00000003302 RRP7AQ9Y3A4 280 aaKnown RBP14.13□□□□□ -0.15
USP28-201ENST00000003302 ATP10AO60312 1499 aa14.13□□□□□ -0.15
USP28-201ENST00000003302 NEUROD2Q15784 382 aa14.12□□□□□ -0.15
USP28-201ENST00000003302 KDM2BQ8NHM5 1336 aa14.12□□□□□ -0.15
USP28-201ENST00000003302 KNSTRNQ9Y448 316 aa14.12□□□□□ -0.15
USP28-201ENST00000003302 NEFMP07197 916 aa14.11□□□□□ -0.15
USP28-201ENST00000003302 ZMYM4Q5VZL5 1548 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms