RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Arhgap5P97393 1501 aa22.3■■□□□ 1.16
Shh-201ENSMUST00000002708 Plekhg5Q66T02 1073 aa22.3■■□□□ 1.16
Shh-201ENSMUST00000002708 Naip6Q9JIB6 1403 aa22.3■■□□□ 1.16
Shh-201ENSMUST00000002708 Fgd6Q69ZL1 1399 aa22.28■■□□□ 1.16
Shh-201ENSMUST00000002708 Ssh2Q5SW75 1423 aa22.27■■□□□ 1.16
Shh-201ENSMUST00000002708 Rtl5Q5DTT4 599 aa22.27■■□□□ 1.16
Shh-201ENSMUST00000002708 Trappc8E9PWG2 1437 aa22.27■■□□□ 1.16
Shh-201ENSMUST00000002708 Lrrc9Q8CDN9 1456 aa22.26■■□□□ 1.15
Shh-201ENSMUST00000002708 DroshaQ5HZJ0 1373 aaKnown RBP22.26■■□□□ 1.15
Shh-201ENSMUST00000002708 Asxl1P59598 1514 aa22.26■■□□□ 1.15
Shh-201ENSMUST00000002708 Dot1lQ6XZL8 1540 aa22.26■■□□□ 1.15
Shh-201ENSMUST00000002708 Myom3A2ABU4 1439 aa22.25■■□□□ 1.15
Shh-201ENSMUST00000002708 Adgrl2Q8JZZ7 1487 aa22.25■■□□□ 1.15
Shh-201ENSMUST00000002708 Ofd1Q80Z25 1017 aa22.25■■□□□ 1.15
Shh-201ENSMUST00000002708 Gm32742A0A1B0GT42 1604 aa22.24■■□□□ 1.15
Shh-201ENSMUST00000002708 Egfem1Q8C088 590 aa22.23■■□□□ 1.15
Shh-201ENSMUST00000002708 Sart1Q9Z315 806 aaKnown RBP22.23■■□□□ 1.15
Shh-201ENSMUST00000002708 RalgapbQ8BQZ4 1484 aa22.22■■□□□ 1.15
Shh-201ENSMUST00000002708 PtprgQ05909 1442 aa22.22■■□□□ 1.15
Shh-201ENSMUST00000002708 L3mbtl2P59178 703 aa22.21■■□□□ 1.15
Shh-201ENSMUST00000002708 Rnf17Q99MV7 1640 aa22.21■■□□□ 1.15
Shh-201ENSMUST00000002708 Pelp1Q9DBD5 1123 aaKnown RBP22.21■■□□□ 1.15
Shh-201ENSMUST00000002708 Gm14025A2AP89 1413 aa22.2■■□□□ 1.14
Shh-201ENSMUST00000002708 Iqgap1Q9JKF1 1657 aaKnown RBP22.2■■□□□ 1.14
Shh-201ENSMUST00000002708 Zbtb4Q5F293 982 aa22.18■■□□□ 1.14
Shh-201ENSMUST00000002708 Clstn2Q9ER65 966 aa22.18■■□□□ 1.14
Shh-201ENSMUST00000002708 Cpsf1Q9EPU4 1441 aaKnown RBP22.18■■□□□ 1.14
Shh-201ENSMUST00000002708 Pdcd11Q6NS46 1862 aaKnown RBP22.18■■□□□ 1.14
Shh-201ENSMUST00000002708 Cd109Q8R422 1442 aa22.16■■□□□ 1.14
Shh-201ENSMUST00000002708 Polr3aB2RXC6 1390 aa22.16■■□□□ 1.14
Shh-201ENSMUST00000002708 Mast1Q9R1L5 1570 aa22.14■■□□□ 1.13
Shh-201ENSMUST00000002708 Atp7aQ64430 1491 aa22.14■■□□□ 1.13
Shh-201ENSMUST00000002708 Rock1P70335 1354 aa22.13■■□□□ 1.13
Shh-201ENSMUST00000002708 Chd1P40201 1711 aa22.11■■□□□ 1.13
Shh-201ENSMUST00000002708 Cdc42bpbQ7TT50 1713 aa22.11■■□□□ 1.13
Shh-201ENSMUST00000002708 Ttbk1Q6PCN3 1308 aa22.11■■□□□ 1.13
Shh-201ENSMUST00000002708 NhsB1AV60 1647 aa22.09■■□□□ 1.13
Shh-201ENSMUST00000002708 Rock2P70336 1388 aa22.09■■□□□ 1.13
Shh-201ENSMUST00000002708 Cfap74Q3UY96 1578 aa22.09■■□□□ 1.13
Shh-201ENSMUST00000002708 Tarbp1E9Q368 1579 aa22.08■■□□□ 1.13
Shh-201ENSMUST00000002708 PrkcshO08795 521 aa22.07■■□□□ 1.12
Shh-201ENSMUST00000002708 Abcc1O35379 1528 aa22.06■■□□□ 1.12
Shh-201ENSMUST00000002708 Spag9Q58A65 1321 aaKnown RBP22.05■■□□□ 1.12
Shh-201ENSMUST00000002708 Hecw1Q8K4P8 1604 aa22.05■■□□□ 1.12
Shh-201ENSMUST00000002708 Ifit1bl1D3Z6F0 470 aa22.04■■□□□ 1.12
Shh-201ENSMUST00000002708 Map3k5O35099 1380 aa22.03■■□□□ 1.12
Shh-201ENSMUST00000002708 Neurl4Q5NCX5 1563 aa22.03■■□□□ 1.12
Shh-201ENSMUST00000002708 Erbb3Q61526 1339 aa22.02■■□□□ 1.12
Shh-201ENSMUST00000002708 AI481877A2ALV5 1481 aa22.02■■□□□ 1.12
Shh-201ENSMUST00000002708 Kiaa1210E9Q0C6 1637 aa22.02■■□□□ 1.11
Shh-201ENSMUST00000002708 Abcc3B2RX12 1523 aa22.01■■□□□ 1.11
Shh-201ENSMUST00000002708 Atp10dQ8K2X1 1416 aa22.01■■□□□ 1.11
Shh-201ENSMUST00000002708 Abca8bQ8K440 1620 aa22■■□□□ 1.11
Shh-201ENSMUST00000002708 Pde4cQ3UEI1 686 aa22■■□□□ 1.11
Shh-201ENSMUST00000002708 Rpgrip1lQ8CG73 1264 aa22■■□□□ 1.11
Shh-201ENSMUST00000002708 Kdm5cP41230 1554 aa21.99■■□□□ 1.11
Shh-201ENSMUST00000002708 Setd1aE9PYH6 1716 aa21.99■■□□□ 1.11
Shh-201ENSMUST00000002708 Tubgcp6G5E8P0 1769 aa21.98■■□□□ 1.11
Shh-201ENSMUST00000002708 Znf608Q56A10 1511 aa21.97■■□□□ 1.11
Shh-201ENSMUST00000002708 Prdm16A2A935 1275 aa21.96■■□□□ 1.11
Shh-201ENSMUST00000002708 Kif1bQ60575 1816 aaKnown RBP21.96■■□□□ 1.11
Shh-201ENSMUST00000002708 Rad21Q61550 635 aaKnown RBP21.95■■□□□ 1.1
Shh-201ENSMUST00000002708 Mroh3A0A1D5RM54 893 aa21.95■■□□□ 1.1
Shh-201ENSMUST00000002708 Erich6D3Z6S9 713 aa21.94■■□□□ 1.1
Shh-201ENSMUST00000002708 Q7TT23 1179 aa21.94■■□□□ 1.1
Shh-201ENSMUST00000002708 Tcerg1Q8CGF7 1100 aaKnown RBP21.94■■□□□ 1.1
Shh-201ENSMUST00000002708 Kidins220E9Q9B7 1793 aa21.94■■□□□ 1.1
Shh-201ENSMUST00000002708 Adamts13Q769J6 1426 aa21.94■■□□□ 1.1
Shh-201ENSMUST00000002708 Cep170Q6A065 1588 aa21.94■■□□□ 1.1
Shh-201ENSMUST00000002708 Ppip5k1A2ARP1 1436 aa21.94■■□□□ 1.1
Shh-201ENSMUST00000002708 Gapvd1Q6PAR5 1458 aa21.93■■□□□ 1.1
Shh-201ENSMUST00000002708 Usp54Q8BL06 1588 aaKnown RBP21.93■■□□□ 1.1
Shh-201ENSMUST00000002708 ShprhQ7TPQ3 1674 aa21.92■■□□□ 1.1
Shh-201ENSMUST00000002708 Edc4Q3UJB9 1406 aaKnown RBP21.92■■□□□ 1.1
Shh-201ENSMUST00000002708 Robo2Q7TPD3 1470 aa21.91■■□□□ 1.1
Shh-201ENSMUST00000002708 Zfp444Q3TDV8 331 aaKnown RBP21.9■■□□□ 1.1
Shh-201ENSMUST00000002708 Pank3Q8R2W9 370 aa21.9■■□□□ 1.1
Shh-201ENSMUST00000002708 Anp32bQ9EST5 272 aaKnown RBP21.89■■□□□ 1.09
Shh-201ENSMUST00000002708 Ipo9Q91YE6 1041 aa21.88■■□□□ 1.09
Shh-201ENSMUST00000002708 Abca17E9PX95 1733 aa21.88■■□□□ 1.09
Shh-201ENSMUST00000002708 PrxO55103 1391 aa21.87■■□□□ 1.09
Shh-201ENSMUST00000002708 Inpp5dQ9ES52 1191 aa21.87■■□□□ 1.09
Shh-201ENSMUST00000002708 Xrn1P97789 1719 aaKnown RBP21.86■■□□□ 1.09
Shh-201ENSMUST00000002708 Zscan21Q07231 555 aa21.86■■□□□ 1.09
Shh-201ENSMUST00000002708 Tulp4Q9JIL5 1547 aa21.86■■□□□ 1.09
Shh-201ENSMUST00000002708 Kdm2aP59997 1161 aa21.85■■□□□ 1.09
Shh-201ENSMUST00000002708 Ccdc27Q3V036 639 aa21.84■■□□□ 1.09
Shh-201ENSMUST00000002708 Sall3Q62255 1320 aa21.84■■□□□ 1.09
Shh-201ENSMUST00000002708 Nsd2Q8BVE8 1365 aa21.83■■□□□ 1.09
Shh-201ENSMUST00000002708 ChgaP26339 463 aaKnown RBP21.83■■□□□ 1.08
Shh-201ENSMUST00000002708 Kank1E9Q238 1360 aa21.83■■□□□ 1.08
Shh-201ENSMUST00000002708 Myo5cE9Q1F5 1742 aa21.81■■□□□ 1.08
Shh-201ENSMUST00000002708 Kif3bQ61771 747 aa21.8■■□□□ 1.08
Shh-201ENSMUST00000002708 Mak16Q8BGS0 296 aaKnown RBP21.78■■□□□ 1.08
Shh-201ENSMUST00000002708 Igf1rQ60751 1373 aa21.78■■□□□ 1.08
Shh-201ENSMUST00000002708 Upf2A2AT37 1269 aaKnown RBP21.78■■□□□ 1.08
Shh-201ENSMUST00000002708 Zscan10Q3URR7 782 aa21.78■■□□□ 1.08
Shh-201ENSMUST00000002708 Ythdc2B2RR83 1445 aaKnown RBP21.77■■□□□ 1.08
Shh-201ENSMUST00000002708 Abcc6Q9R1S7 1498 aa21.77■■□□□ 1.08
Shh-201ENSMUST00000002708 Arid3cA6PWV5 409 aa21.77■■□□□ 1.08
Retrieved 100 of 22,080 RNA–protein pairs in 24 ms